Wall clock time and date at job start Wed Apr 1 2020 04:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 N 1.32588 * 119.17318 * 357.32760 * 3 2 1 5 5 C 1.32327 * 120.93922 * 179.97438 * 4 3 2 6 6 C 1.38299 * 119.28521 * 359.74762 * 5 4 3 7 7 C 1.39778 * 118.48338 * 0.51664 * 6 5 4 8 8 N 1.38560 * 120.48831 * 179.76195 * 7 6 5 9 9 C 1.48529 * 111.00325 * 62.32663 * 8 7 6 10 10 C 1.54943 * 103.23110 * 159.72035 * 9 8 7 11 11 C 1.54593 * 102.91873 * 322.58517 * 10 9 8 12 12 C 1.47906 * 110.99896 * 179.71964 * 8 7 6 13 13 H 1.09004 * 109.91554 * 333.50926 * 12 8 7 14 14 C 1.53003 * 109.91763 * 94.80012 * 12 8 7 15 15 N 1.46496 * 109.47252 * 304.04564 * 14 12 8 16 16 C 1.34774 * 120.00256 * 179.97438 * 15 14 12 17 17 O 1.21281 * 120.00152 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00023 * 179.97438 * 16 15 14 19 19 S 1.81001 * 109.46873 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99802 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99888 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00031 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99659 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99945 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47282 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47121 * 120.00068 * 24 22 20 27 27 H 1.48499 * 109.47315 * 240.00075 * 24 22 20 28 28 N 1.32579 * 119.16953 * 177.35394 * 3 2 1 29 29 H 1.07993 * 120.35347 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.75722 * 180.25708 * 6 5 4 31 31 H 1.08995 * 110.67216 * 41.28522 * 9 8 7 32 32 H 1.09004 * 110.80922 * 278.21699 * 9 8 7 33 33 H 1.08999 * 110.72722 * 204.22642 * 10 9 8 34 34 H 1.09004 * 110.87493 * 81.01227 * 10 9 8 35 35 H 1.09005 * 110.30819 * 263.04149 * 11 10 9 36 36 H 1.08998 * 110.39751 * 140.91741 * 11 10 9 37 37 H 1.09000 * 109.46761 * 64.04447 * 14 12 8 38 38 H 1.08995 * 109.47283 * 184.04365 * 14 12 8 39 39 H 0.97006 * 119.99741 * 359.97438 * 15 14 12 40 40 H 1.08996 * 109.47576 * 300.00554 * 18 16 15 41 41 H 1.09005 * 109.46926 * 60.00247 * 18 16 15 42 42 H 0.97001 * 119.99392 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2148 -1.1555 0.0540 5 6 4.5375 -1.1957 0.0554 6 6 5.2503 -0.0121 -0.0057 7 6 4.5411 1.1913 -0.0560 8 7 5.2133 2.4016 -0.1130 9 6 6.0290 2.4997 -1.3504 10 6 6.2547 4.0247 -1.5064 11 6 4.9060 4.6227 -1.0445 12 6 4.2630 3.5338 -0.1658 13 1 3.3214 3.2079 -0.6078 14 6 4.0209 4.0772 1.2438 15 7 3.5539 2.9932 2.1116 16 6 3.2752 3.2394 3.4070 17 8 3.4106 4.3586 3.8543 18 6 2.7942 2.1244 4.2994 19 16 2.5079 2.7672 5.9670 20 6 1.9698 1.2961 6.7738 21 1 1.9044 0.3703 6.2214 22 6 1.6301 1.3270 8.1193 23 7 1.7094 2.4554 8.7923 24 14 1.0590 -0.2325 8.9744 25 1 1.0569 -1.3566 8.0041 26 1 1.9806 -0.5484 10.0951 27 1 -0.3139 -0.0324 9.5038 28 7 3.2137 1.1574 -0.0534 29 1 5.0546 -2.1427 0.0992 30 1 6.3303 -0.0174 -0.0102 31 1 5.4811 2.1026 -2.2049 32 1 6.9798 1.9806 -1.2297 33 1 6.4540 4.2807 -2.5470 34 1 7.0674 4.3647 -0.8645 35 1 4.2726 4.8370 -1.9054 36 1 5.0719 5.5293 -0.4627 37 1 4.9506 4.4852 1.6405 38 1 3.2663 4.8628 1.2058 39 1 3.4452 2.0981 1.7537 40 1 1.8643 1.7169 3.9028 41 1 3.5483 1.3382 4.3372 42 1 1.4716 2.4770 9.7325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100787421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:21 Heat of formation + Delta-G solvation = 49.356972 kcal Electronic energy + Delta-G solvation = -27595.464789 eV Core-core repulsion = 23702.137721 eV Total energy + Delta-G solvation = -3893.327068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.77732 -40.83764 -40.00387 -37.90702 -35.79299 -35.29440 -34.63283 -33.97043 -32.03639 -31.19595 -30.13356 -27.74241 -26.99695 -26.03057 -25.02703 -22.72003 -21.86758 -21.38949 -20.82993 -19.90536 -18.76658 -18.06429 -17.91772 -17.55069 -16.92951 -16.75022 -16.61853 -16.57815 -16.05878 -15.63314 -15.60342 -15.40844 -14.73834 -14.62670 -14.55365 -14.48848 -14.30992 -14.10775 -13.95330 -13.57794 -13.29683 -13.21906 -12.96059 -12.94029 -12.67482 -12.41274 -12.27744 -12.12807 -11.94643 -11.76438 -11.50429 -11.19902 -11.10704 -11.00225 -10.61691 -10.36894 -10.15547 -9.71224 -8.72960 -8.39267 -6.18291 -0.80458 -0.13697 1.09792 1.20522 1.38076 1.41389 1.47745 1.51179 1.54479 1.77370 2.19679 2.22418 2.34939 2.65573 2.94560 3.11873 3.24765 3.39291 3.54031 3.66361 3.82234 3.89925 3.95222 4.09916 4.12552 4.18796 4.29342 4.32000 4.35156 4.48596 4.59809 4.69711 4.78215 4.87879 4.95094 5.11442 5.14646 5.18981 5.36553 5.37271 5.41536 5.74353 5.78405 6.03065 6.15122 6.36591 6.66505 7.01639 7.12415 8.70345 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011021 B = 0.003195 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.071628 B = 8762.806995 C =10200.497182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C 0.293 3.707 3 C 0.408 3.592 4 N -0.512 5.512 5 C 0.173 3.827 6 C -0.186 4.186 7 C 0.334 3.666 8 N -0.458 5.458 9 C 0.044 3.956 10 C -0.116 4.116 11 C -0.124 4.124 12 C 0.057 3.943 13 H 0.089 0.911 14 C 0.135 3.865 15 N -0.711 5.711 16 C 0.530 3.470 17 O -0.559 6.559 18 C -0.130 4.130 19 S -0.135 6.135 20 C -0.551 4.551 21 H 0.077 0.923 22 C 0.016 3.984 23 N -0.908 5.908 24 Si 0.999 3.001 25 H -0.260 1.260 26 H -0.268 1.268 27 H -0.273 1.273 28 N -0.546 5.546 29 H 0.227 0.773 30 H 0.198 0.802 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.401 0.599 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.198 -5.440 -29.366 33.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.071 5.071 2 C -0.027 4.027 3 C 0.138 3.862 4 N -0.231 5.231 5 C 0.011 3.989 6 C -0.211 4.211 7 C 0.095 3.905 8 N -0.176 5.176 9 C -0.080 4.080 10 C -0.154 4.154 11 C -0.163 4.163 12 C -0.051 4.051 13 H 0.107 0.893 14 C 0.011 3.989 15 N -0.366 5.366 16 C 0.315 3.685 17 O -0.438 6.438 18 C -0.281 4.281 19 S 0.092 5.908 20 C -0.699 4.699 21 H 0.095 0.905 22 C -0.189 4.189 23 N -0.544 5.544 24 Si 0.820 3.180 25 H -0.184 1.184 26 H -0.193 1.193 27 H -0.198 1.198 28 N -0.270 5.270 29 H 0.244 0.756 30 H 0.215 0.785 31 H 0.087 0.913 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.240 0.760 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.116 -3.408 -28.060 31.162 hybrid contribution -0.236 -2.129 -0.098 2.144 sum 12.881 -5.536 -28.158 31.455 Atomic orbital electron populations 1.81285 1.12057 1.07126 1.06648 1.24364 0.90961 0.93123 0.94243 1.16804 0.86980 0.85456 0.97002 1.68315 1.12810 1.27338 1.14609 1.23973 0.86853 1.00949 0.87108 1.23102 1.05261 0.90866 1.01912 1.20607 0.86761 0.93237 0.89908 1.61826 1.19469 0.98806 1.37487 1.23598 0.98238 0.99322 0.86797 1.22553 0.96782 0.92463 1.03615 1.22469 0.97471 0.97192 0.99121 1.22759 0.96552 0.91115 0.94692 0.89282 1.21537 0.99410 0.89149 0.88789 1.46004 1.67834 1.14257 1.08538 1.20002 0.76771 0.88763 0.82922 1.90669 1.53288 1.24688 1.75114 1.23340 1.04341 1.00793 0.99665 1.85455 1.87013 1.17443 1.00841 1.23208 1.52326 0.95847 0.98499 0.90469 1.26122 0.94678 1.01181 0.96928 1.70178 1.46282 1.27994 1.09967 0.84907 0.78059 0.76970 0.78022 1.18413 1.19299 1.19789 1.67982 1.10863 1.29533 1.18665 0.75635 0.78489 0.91347 0.85948 0.87760 0.89813 0.89160 0.89853 0.91365 0.91632 0.76050 0.89015 0.88050 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -11.88 18.54 19.00 0.35 -11.53 16 2 C 0.29 7.68 15.74 88.33 1.39 9.07 16 3 C 0.41 8.70 7.40 136.11 1.01 9.71 16 4 N -0.51 -8.96 10.32 -194.07 -2.00 -10.97 16 5 C 0.17 1.50 11.29 84.63 0.96 2.45 16 6 C -0.19 -1.44 9.57 22.66 0.22 -1.22 16 7 C 0.33 4.79 5.00 133.25 0.67 5.46 16 8 N -0.46 -5.89 4.83 -665.19 -3.21 -9.10 16 9 C 0.04 0.22 6.08 86.65 0.53 0.75 16 10 C -0.12 -0.54 7.06 31.80 0.22 -0.32 16 11 C -0.12 -1.16 6.57 31.47 0.21 -0.95 16 12 C 0.06 0.90 2.60 45.06 0.12 1.02 16 13 H 0.09 1.64 6.53 -2.38 -0.02 1.62 16 14 C 0.13 3.33 5.15 86.38 0.45 3.78 16 15 N -0.71 -22.06 5.40 -463.07 -2.50 -24.56 16 16 C 0.53 22.11 7.85 87.66 0.69 22.80 16 17 O -0.56 -27.61 15.86 -3.03 -0.05 -27.66 16 18 C -0.13 -5.85 6.16 71.24 0.44 -5.41 16 19 S -0.13 -7.88 20.57 -56.49 -1.16 -9.04 16 20 C -0.55 -32.99 9.50 67.95 0.65 -32.35 16 21 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 22 C 0.02 0.94 5.49 84.86 0.47 1.41 16 23 N -0.91 -56.90 13.22 21.65 0.29 -56.61 16 24 Si 1.00 45.08 29.55 68.60 2.03 47.11 16 25 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 28 N -0.55 -10.77 6.29 -191.38 -1.20 -11.97 16 29 H 0.23 -0.06 8.06 -2.91 -0.02 -0.09 16 30 H 0.20 0.06 8.06 -2.91 -0.02 0.03 16 31 H 0.07 0.29 7.99 -2.39 -0.02 0.27 16 32 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.08 0.85 7.69 -2.39 -0.02 0.83 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.40 11.27 4.80 -92.70 -0.44 10.83 16 40 H 0.09 3.97 8.14 -2.40 -0.02 3.95 16 41 H 0.10 4.18 8.14 -2.39 -0.02 4.16 16 42 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -86.21 375.73 1.16 -85.05 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.63 Total: 13.09 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 7.99 Total: 16.19 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -8.28 Total: -124.74 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.05 Total: -27.66 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.16 Total: -9.04 kcal Total: -86.21 1.16 -85.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100787421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.410 kcal (2) G-P(sol) polarization free energy of solvation -86.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds