Wall clock time and date at job start Wed Apr 1 2020 04:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39553 * 120.01986 * 358.15109 * 3 2 1 5 5 N 1.32009 * 119.96568 * 180.02562 * 4 3 2 6 6 C 1.32790 * 120.00325 * 0.02562 * 5 4 3 7 7 N 1.38566 * 119.97587 * 179.97438 * 6 5 4 8 8 C 1.47851 * 111.00164 * 51.95388 * 7 6 5 9 9 C 1.54901 * 104.79570 * 213.63488 * 8 7 6 10 10 C 1.55137 * 101.65471 * 37.07032 * 9 8 7 11 11 C 1.47441 * 111.00321 * 291.11241 * 7 6 5 12 12 H 1.08998 * 109.88582 * 242.82810 * 11 7 6 13 13 C 1.52998 * 109.88461 * 3.85269 * 11 7 6 14 14 N 1.46506 * 109.47032 * 185.16399 * 13 11 7 15 15 C 1.34776 * 119.99815 * 181.88091 * 14 13 11 16 16 O 1.21272 * 120.00146 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99532 * 179.97438 * 15 14 13 18 18 S 1.81000 * 109.46878 * 179.97438 * 17 15 14 19 19 C 1.76200 * 99.99909 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00485 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00060 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99528 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00002 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47023 * 60.00201 * 23 21 19 25 25 H 1.48494 * 109.47117 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47052 * 300.00668 * 23 21 19 27 27 C 1.39707 * 120.04011 * 359.97438 * 6 5 4 28 28 N 1.31570 * 120.03943 * 0.02562 * 27 6 5 29 29 H 1.08007 * 120.01797 * 0.04482 * 4 3 2 30 30 H 1.08999 * 110.37405 * 332.46579 * 8 7 6 31 31 H 1.09000 * 110.36836 * 94.80237 * 8 7 6 32 32 H 1.09004 * 110.99129 * 278.97522 * 9 8 7 33 33 H 1.08998 * 111.02211 * 155.18321 * 9 8 7 34 34 H 1.08998 * 110.70828 * 205.96379 * 10 9 8 35 35 H 1.08997 * 110.70685 * 82.72481 * 10 9 8 36 36 H 1.09007 * 109.47196 * 305.15817 * 13 11 7 37 37 H 1.08994 * 109.47425 * 65.16336 * 13 11 7 38 38 H 0.97001 * 119.99835 * 1.87863 * 14 13 11 39 39 H 1.08999 * 109.47398 * 299.99830 * 17 15 14 40 40 H 1.09001 * 109.47142 * 60.00213 * 17 15 14 41 41 H 0.97001 * 119.99884 * 179.97438 * 22 21 19 42 42 H 1.08004 * 119.98052 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2668 -1.2067 0.0390 5 7 4.5869 -1.2049 0.0395 6 6 5.2493 -0.0546 0.0034 7 7 6.6350 -0.0533 0.0044 8 6 7.1665 -0.9376 -1.0546 9 6 8.4725 -1.5233 -0.4623 10 6 8.0827 -1.7152 1.0270 11 6 7.1629 -0.5075 1.3040 12 1 7.7316 0.2948 1.7740 13 6 6.0089 -0.9302 2.2154 14 7 6.5317 -1.2622 3.5431 15 6 5.6965 -1.6998 4.5061 16 8 4.5122 -1.8183 4.2737 17 6 6.2344 -2.0419 5.8716 18 16 4.8769 -2.5942 6.9338 19 6 5.7644 -2.9174 8.4213 20 1 6.8316 -2.7565 8.4593 21 6 5.0916 -3.3778 9.5448 22 7 3.7908 -3.5734 9.4987 23 14 6.0326 -3.7211 11.1215 24 1 6.6935 -2.4746 11.5849 25 1 5.0913 -4.2003 12.1653 26 1 7.0611 -4.7617 10.8676 27 6 4.5500 1.1543 -0.0357 28 7 3.2343 1.1543 -0.0362 29 1 2.7278 -2.1422 0.0684 30 1 6.4575 -1.7361 -1.2734 31 1 7.3825 -0.3633 -1.9555 32 1 9.2974 -0.8178 -0.5623 33 1 8.7192 -2.4776 -0.9275 34 1 8.9663 -1.6807 1.6642 35 1 7.5420 -2.6513 1.1664 36 1 5.2945 -0.1114 2.3006 37 1 5.5124 -1.8031 1.7917 38 1 7.4790 -1.1672 3.7290 39 1 6.9733 -2.8382 5.7821 40 1 6.7020 -1.1599 6.3094 41 1 3.3207 -3.8955 10.2836 42 1 5.0897 2.0893 -0.0654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100788497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:40 Heat of formation + Delta-G solvation = 74.412803 kcal Electronic energy + Delta-G solvation = -27077.831948 eV Core-core repulsion = 23185.591382 eV Total energy + Delta-G solvation = -3892.240566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.22348 -39.92166 -38.87142 -36.93107 -34.90149 -34.62692 -33.29208 -32.45142 -30.88064 -30.31052 -28.79662 -25.81944 -25.51236 -25.05557 -24.79579 -21.89074 -21.08756 -20.49816 -19.98385 -18.48388 -18.09749 -17.41601 -16.84217 -16.18405 -15.81222 -15.41884 -15.37939 -15.27589 -15.05833 -14.82341 -14.32077 -14.09952 -13.78449 -13.60750 -13.39549 -13.23824 -13.19733 -13.03622 -12.99408 -12.57810 -12.40311 -12.19050 -11.93214 -11.69926 -11.52679 -11.33498 -11.13543 -11.07001 -11.05559 -10.79317 -9.98526 -9.85264 -9.66587 -9.53130 -9.20166 -9.08890 -8.97879 -8.27251 -6.53060 -6.23655 -3.94788 -0.23316 0.53018 2.11544 2.34888 2.71494 2.97891 3.02351 3.11876 3.21835 3.26311 3.29422 3.32580 3.57217 3.72794 3.98230 4.06988 4.11111 4.18293 4.21855 4.33274 4.64336 4.71959 4.90764 4.95402 5.01184 5.09437 5.11478 5.18296 5.36278 5.37775 5.45402 5.47209 5.54874 5.59862 5.69670 5.83673 5.87748 6.06593 6.09085 6.39591 6.50369 6.56936 7.01361 7.09418 7.56731 7.59792 8.32687 8.52687 9.21434 10.83722 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.002611 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.137508 B =10722.819459 C =12690.523197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C 0.267 3.733 3 C 0.136 3.864 4 C 0.127 3.873 5 N -0.456 5.456 6 C 0.269 3.731 7 N -0.467 5.467 8 C 0.041 3.959 9 C -0.126 4.126 10 C -0.137 4.137 11 C 0.069 3.931 12 H 0.105 0.895 13 C 0.102 3.898 14 N -0.735 5.735 15 C 0.533 3.467 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.093 3.907 28 N -0.397 5.397 29 H 0.182 0.818 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.338 7.018 -24.572 27.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.051 5.051 2 C -0.051 4.051 3 C -0.003 4.003 4 C -0.036 4.036 5 N -0.174 5.174 6 C 0.037 3.963 7 N -0.191 5.191 8 C -0.085 4.085 9 C -0.164 4.164 10 C -0.175 4.175 11 C -0.038 4.038 12 H 0.123 0.877 13 C -0.023 4.023 14 N -0.390 5.390 15 C 0.319 3.681 16 O -0.390 6.390 17 C -0.303 4.303 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.073 4.073 28 N -0.112 5.112 29 H 0.199 0.801 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 7.569 7.276 -24.968 27.086 hybrid contribution 2.601 -0.716 1.631 3.153 sum 10.171 6.560 -23.337 26.289 Atomic orbital electron populations 1.81293 1.11211 1.05975 1.06574 1.24581 0.91202 0.94551 0.94746 1.17302 0.87484 0.91542 1.04011 1.23641 0.89710 0.98372 0.91888 1.68764 1.08674 1.29880 1.10068 1.21242 0.92059 0.90114 0.92926 1.61907 1.00848 1.51216 1.05114 1.23225 0.96406 0.94996 0.93859 1.22691 0.97035 1.01568 0.95069 1.22904 0.99629 0.98009 0.96966 1.22733 0.95243 0.97945 0.87867 0.87683 1.22196 0.95598 1.01278 0.83274 1.45886 1.11585 1.70160 1.11407 1.20338 0.86337 0.75842 0.85622 1.90702 1.15908 1.50954 1.81402 1.23522 1.06497 1.04588 0.95717 1.85422 1.07174 1.84905 1.05798 1.22821 0.96321 1.51935 0.97438 0.90955 1.24995 0.95049 0.94763 0.98745 1.70004 1.07263 1.42659 1.30328 0.86221 0.79288 0.78790 0.81188 1.19917 1.20796 1.19925 1.23609 0.88505 0.99117 0.96039 1.68380 1.08898 1.27360 1.06599 0.80063 0.91152 0.89304 0.90214 0.90082 0.89845 0.90173 0.92605 0.89179 0.76757 0.89159 0.89181 0.92093 0.79448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -4.98 18.54 41.84 0.78 -4.20 16 2 C 0.27 3.04 15.56 -22.47 -0.35 2.69 16 3 C 0.14 1.35 6.59 -84.83 -0.56 0.79 16 4 C 0.13 1.13 10.92 -16.99 -0.19 0.94 16 5 N -0.46 -4.22 6.86 -11.93 -0.08 -4.30 16 6 C 0.27 2.23 3.61 -154.89 -0.56 1.67 16 7 N -0.47 -3.23 5.15 -162.37 -0.84 -4.06 16 8 C 0.04 0.24 6.61 -2.30 -0.02 0.22 16 9 C -0.13 -0.59 7.08 -24.60 -0.17 -0.77 16 10 C -0.14 -0.83 6.19 -24.91 -0.15 -0.99 16 11 C 0.07 0.51 3.45 -66.73 -0.23 0.27 16 12 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 13 C 0.10 1.13 3.60 -4.04 -0.01 1.12 16 14 N -0.73 -9.12 5.39 -60.29 -0.32 -9.45 16 15 C 0.53 9.63 7.85 -10.98 -0.09 9.54 16 16 O -0.52 -11.52 15.86 5.56 0.09 -11.43 16 17 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 23 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C 0.09 0.74 11.08 -17.12 -0.19 0.55 16 28 N -0.40 -3.94 10.41 -10.72 -0.11 -4.06 16 29 H 0.18 1.21 8.06 -52.48 -0.42 0.79 16 30 H 0.07 0.48 7.03 -51.93 -0.36 0.11 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.62 7.76 -51.93 -0.40 0.22 16 36 H 0.06 0.73 7.03 -51.93 -0.36 0.36 16 37 H 0.09 1.17 6.11 -51.93 -0.32 0.85 16 38 H 0.40 3.64 8.37 -40.82 -0.34 3.30 16 39 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 40 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.19 1.00 8.06 -52.48 -0.42 0.57 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -36.04 376.06 -8.56 -44.60 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.14 Total: -0.22 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -2.10 Total: 0.42 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.16 Total: -51.44 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.04 -8.56 -44.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100788497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.009 kcal (2) G-P(sol) polarization free energy of solvation -36.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds