Wall clock time and date at job start Wed Apr 1 2020 04:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39553 * 120.01986 * 358.15109 * 3 2 1 5 5 N 1.32009 * 119.96568 * 180.02562 * 4 3 2 6 6 C 1.32790 * 120.00325 * 0.02562 * 5 4 3 7 7 N 1.38566 * 119.97587 * 179.97438 * 6 5 4 8 8 C 1.47851 * 111.00164 * 51.95388 * 7 6 5 9 9 C 1.54901 * 104.79570 * 213.63488 * 8 7 6 10 10 C 1.55137 * 101.65471 * 37.07032 * 9 8 7 11 11 C 1.47441 * 111.00321 * 291.11241 * 7 6 5 12 12 H 1.08998 * 109.88582 * 242.82810 * 11 7 6 13 13 C 1.52998 * 109.88461 * 3.85269 * 11 7 6 14 14 N 1.46506 * 109.47032 * 185.16399 * 13 11 7 15 15 C 1.34776 * 119.99815 * 181.88091 * 14 13 11 16 16 O 1.21272 * 120.00146 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99532 * 179.97438 * 15 14 13 18 18 S 1.81000 * 109.46878 * 179.97438 * 17 15 14 19 19 C 1.76200 * 99.99909 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00485 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00060 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99528 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00002 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47023 * 60.00201 * 23 21 19 25 25 H 1.48494 * 109.47117 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47052 * 300.00668 * 23 21 19 27 27 C 1.39707 * 120.04011 * 359.97438 * 6 5 4 28 28 N 1.31570 * 120.03943 * 0.02562 * 27 6 5 29 29 H 1.08007 * 120.01797 * 0.04482 * 4 3 2 30 30 H 1.08999 * 110.37405 * 332.46579 * 8 7 6 31 31 H 1.09000 * 110.36836 * 94.80237 * 8 7 6 32 32 H 1.09004 * 110.99129 * 278.97522 * 9 8 7 33 33 H 1.08998 * 111.02211 * 155.18321 * 9 8 7 34 34 H 1.08998 * 110.70828 * 205.96379 * 10 9 8 35 35 H 1.08997 * 110.70685 * 82.72481 * 10 9 8 36 36 H 1.09007 * 109.47196 * 305.15817 * 13 11 7 37 37 H 1.08994 * 109.47425 * 65.16336 * 13 11 7 38 38 H 0.97001 * 119.99835 * 1.87863 * 14 13 11 39 39 H 1.08999 * 109.47398 * 299.99830 * 17 15 14 40 40 H 1.09001 * 109.47142 * 60.00213 * 17 15 14 41 41 H 0.97001 * 119.99884 * 179.97438 * 22 21 19 42 42 H 1.08004 * 119.98052 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2668 -1.2067 0.0390 5 7 4.5869 -1.2049 0.0395 6 6 5.2493 -0.0546 0.0034 7 7 6.6350 -0.0533 0.0044 8 6 7.1665 -0.9376 -1.0546 9 6 8.4725 -1.5233 -0.4623 10 6 8.0827 -1.7152 1.0270 11 6 7.1629 -0.5075 1.3040 12 1 7.7316 0.2948 1.7740 13 6 6.0089 -0.9302 2.2154 14 7 6.5317 -1.2622 3.5431 15 6 5.6965 -1.6998 4.5061 16 8 4.5122 -1.8183 4.2737 17 6 6.2344 -2.0419 5.8716 18 16 4.8769 -2.5942 6.9338 19 6 5.7644 -2.9174 8.4213 20 1 6.8316 -2.7565 8.4593 21 6 5.0916 -3.3778 9.5448 22 7 3.7908 -3.5734 9.4987 23 14 6.0326 -3.7211 11.1215 24 1 6.6935 -2.4746 11.5849 25 1 5.0913 -4.2003 12.1653 26 1 7.0611 -4.7617 10.8676 27 6 4.5500 1.1543 -0.0357 28 7 3.2343 1.1543 -0.0362 29 1 2.7278 -2.1422 0.0684 30 1 6.4575 -1.7361 -1.2734 31 1 7.3825 -0.3633 -1.9555 32 1 9.2974 -0.8178 -0.5623 33 1 8.7192 -2.4776 -0.9275 34 1 8.9663 -1.6807 1.6642 35 1 7.5420 -2.6513 1.1664 36 1 5.2945 -0.1114 2.3006 37 1 5.5124 -1.8031 1.7917 38 1 7.4790 -1.1672 3.7290 39 1 6.9733 -2.8382 5.7821 40 1 6.7020 -1.1599 6.3094 41 1 3.3207 -3.8955 10.2836 42 1 5.0897 2.0893 -0.0654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100788497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:39 Heat of formation + Delta-G solvation = 47.419325 kcal Electronic energy + Delta-G solvation = -27079.002473 eV Core-core repulsion = 23185.591382 eV Total energy + Delta-G solvation = -3893.411091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.90798 -40.85804 -39.98443 -37.86778 -35.87606 -35.53315 -34.58750 -33.90514 -32.01514 -30.95665 -29.95840 -27.68587 -26.48874 -25.75604 -25.64520 -22.45994 -21.77175 -21.71875 -20.77755 -19.87981 -19.19934 -18.41671 -17.87181 -17.31601 -16.88110 -16.77575 -16.45599 -16.29756 -16.04354 -15.79486 -15.67357 -15.19511 -14.86326 -14.69167 -14.43020 -14.32305 -14.27523 -14.00660 -13.84577 -13.64368 -13.41144 -13.17385 -12.96125 -12.86854 -12.81559 -12.63513 -12.32699 -12.07307 -12.00736 -11.75398 -11.57353 -11.13013 -11.05023 -10.67840 -10.37437 -10.28161 -10.15799 -9.83233 -8.67595 -8.34845 -6.13223 -0.96808 -0.15626 1.21997 1.25538 1.43985 1.46032 1.51923 1.55772 1.58206 2.02297 2.19599 2.27524 2.48632 2.55048 2.98541 2.99506 3.27797 3.32743 3.40197 3.47477 3.63798 3.79627 3.95964 3.98610 4.20821 4.29112 4.31787 4.36473 4.40929 4.50459 4.61802 4.65883 4.83105 4.95511 5.01544 5.06887 5.16047 5.28501 5.39698 5.41454 5.56607 5.78398 5.85970 6.14040 6.19283 6.39866 6.45148 7.06429 7.20283 8.74088 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.002611 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.137508 B =10722.819459 C =12690.523197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.288 3.712 3 C 0.121 3.879 4 C 0.127 3.873 5 N -0.468 5.468 6 C 0.271 3.729 7 N -0.459 5.459 8 C 0.038 3.962 9 C -0.116 4.116 10 C -0.137 4.137 11 C 0.076 3.924 12 H 0.127 0.873 13 C 0.106 3.894 14 N -0.706 5.706 15 C 0.534 3.466 16 O -0.566 6.566 17 C -0.127 4.127 18 S -0.155 6.155 19 C -0.546 4.546 20 H 0.085 0.915 21 C 0.013 3.987 22 N -0.913 5.913 23 Si 0.998 3.002 24 H -0.261 1.261 25 H -0.281 1.281 26 H -0.261 1.261 27 C 0.097 3.903 28 N -0.414 5.414 29 H 0.196 0.804 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.419 0.581 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.271 0.729 42 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.459 7.719 -24.985 30.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.030 4.030 3 C -0.018 4.018 4 C -0.036 4.036 5 N -0.186 5.186 6 C 0.038 3.962 7 N -0.183 5.183 8 C -0.088 4.088 9 C -0.154 4.154 10 C -0.175 4.175 11 C -0.031 4.031 12 H 0.144 0.856 13 C -0.019 4.019 14 N -0.361 5.361 15 C 0.319 3.681 16 O -0.444 6.444 17 C -0.279 4.279 18 S 0.072 5.928 19 C -0.694 4.694 20 H 0.103 0.897 21 C -0.192 4.192 22 N -0.549 5.549 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.206 1.206 26 H -0.185 1.185 27 C -0.069 4.069 28 N -0.129 5.129 29 H 0.213 0.787 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.257 0.743 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 11.738 7.986 -25.421 29.117 hybrid contribution 1.447 -0.887 1.620 2.346 sum 13.185 7.099 -23.801 28.120 Atomic orbital electron populations 1.81293 1.12335 1.07331 1.08316 1.24796 0.91449 0.93310 0.93452 1.17260 0.86716 0.92172 1.05611 1.23856 0.89829 0.98633 0.91259 1.68815 1.08685 1.30556 1.10546 1.21520 0.92817 0.90011 0.91835 1.62070 0.99768 1.51279 1.05159 1.23340 0.96622 0.94754 0.94100 1.22686 0.96733 1.02325 0.93690 1.22920 0.99716 0.96311 0.98551 1.22800 0.93795 0.99240 0.87256 0.85573 1.22252 0.96959 0.99948 0.82776 1.45553 1.11992 1.67718 1.10813 1.20111 0.86017 0.75960 0.85974 1.90695 1.18108 1.53485 1.82125 1.23353 1.03565 1.05889 0.95064 1.85634 1.12858 1.85885 1.08415 1.23178 0.96824 1.51723 0.97635 0.89703 1.26144 0.95981 0.94257 1.02824 1.70181 1.09351 1.43891 1.31476 0.85003 0.77830 0.79222 0.75953 1.18575 1.20596 1.18509 1.24068 0.87844 1.00152 0.94816 1.68358 1.09960 1.27439 1.07187 0.78674 0.92520 0.87724 0.88588 0.89344 0.87880 0.92070 0.94410 0.90896 0.74317 0.86899 0.87037 0.92044 0.76676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -11.68 18.54 19.01 0.35 -11.33 16 2 C 0.29 6.87 15.56 88.33 1.37 8.25 16 3 C 0.12 2.46 6.59 40.49 0.27 2.73 16 4 C 0.13 2.30 10.92 84.98 0.93 3.23 16 5 N -0.47 -8.47 6.86 -191.64 -1.31 -9.79 16 6 C 0.27 4.12 3.61 133.23 0.48 4.60 16 7 N -0.46 -5.11 5.15 -667.61 -3.44 -8.55 16 8 C 0.04 0.33 6.61 86.77 0.57 0.90 16 9 C -0.12 -0.68 7.08 31.98 0.23 -0.45 16 10 C -0.14 -1.21 6.19 31.77 0.20 -1.02 16 11 C 0.08 0.88 3.45 45.26 0.16 1.04 16 12 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 13 C 0.11 2.20 3.60 86.38 0.31 2.51 16 14 N -0.71 -16.03 5.39 -463.05 -2.49 -18.52 16 15 C 0.53 18.89 7.85 87.66 0.69 19.58 16 16 O -0.57 -25.86 15.86 -3.01 -0.05 -25.91 16 17 C -0.13 -4.84 6.16 71.24 0.44 -4.40 16 18 S -0.16 -8.52 20.57 -56.49 -1.16 -9.69 16 19 C -0.55 -30.77 9.50 67.96 0.65 -30.13 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.11 13.22 21.65 0.29 -55.83 16 23 Si 1.00 43.13 29.55 68.60 2.03 45.16 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 27 C 0.10 1.42 11.08 85.09 0.94 2.36 16 28 N -0.41 -8.13 10.41 -187.84 -1.96 -10.08 16 29 H 0.20 2.76 8.06 -2.91 -0.02 2.73 16 30 H 0.06 0.68 7.03 -2.39 -0.02 0.66 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 33 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.81 7.76 -2.39 -0.02 0.80 16 36 H 0.04 0.95 7.03 -2.38 -0.02 0.94 16 37 H 0.07 1.85 6.11 -2.39 -0.01 1.84 16 38 H 0.42 6.15 8.37 -92.71 -0.78 5.37 16 39 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 40 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 42 H 0.22 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -81.95 376.06 0.25 -81.70 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.30 Total: 12.46 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 7.69 Total: 10.38 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -8.56 Total: -114.10 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.05 Total: -25.91 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.69 kcal Total: -81.95 0.25 -81.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100788497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.115 kcal (2) G-P(sol) polarization free energy of solvation -81.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds