Wall clock time and date at job start Wed Apr 1 2020 04:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39407 * 120.06331 * 80.55535 * 3 2 1 5 5 N 1.32135 * 120.04597 * 180.02562 * 4 3 2 6 6 C 1.31970 * 120.18450 * 359.97008 * 5 4 3 7 7 C 1.39569 * 120.12409 * 0.02562 * 6 5 4 8 8 N 1.38986 * 120.02127 * 180.02562 * 7 6 5 9 9 C 1.47440 * 110.99711 * 59.87143 * 8 7 6 10 10 C 1.54324 * 107.23249 * 123.26011 * 9 8 7 11 11 C 1.55134 * 103.01856 * 22.27889 * 10 9 8 12 12 H 1.08998 * 110.99001 * 82.44258 * 11 10 9 13 13 C 1.52998 * 110.98990 * 206.21902 * 11 10 9 14 14 N 1.46501 * 109.47382 * 293.54850 * 13 11 10 15 15 C 1.34780 * 120.00481 * 179.97438 * 14 13 11 16 16 O 1.21281 * 119.99484 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00183 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.47256 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00047 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99988 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99905 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99891 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99824 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.46984 * 90.00087 * 23 21 19 25 25 H 1.48499 * 109.47201 * 209.99644 * 23 21 19 26 26 H 1.48498 * 109.47237 * 330.00131 * 23 21 19 27 27 C 1.47843 * 110.99791 * 180.71062 * 8 7 6 28 28 N 1.32401 * 119.95494 * 359.75674 * 7 6 5 29 29 H 1.08000 * 119.98068 * 359.97438 * 4 3 2 30 30 H 1.07997 * 119.93758 * 179.97438 * 6 5 4 31 31 H 1.09006 * 109.88821 * 242.65933 * 9 8 7 32 32 H 1.08994 * 109.89640 * 3.84888 * 9 8 7 33 33 H 1.08997 * 110.70700 * 140.66448 * 10 9 8 34 34 H 1.08998 * 110.70147 * 263.89402 * 10 9 8 35 35 H 1.09000 * 109.47177 * 53.54847 * 13 11 10 36 36 H 1.09000 * 109.47312 * 173.54538 * 13 11 10 37 37 H 0.97003 * 119.99843 * 0.02562 * 14 13 11 38 38 H 1.09000 * 109.47346 * 300.00291 * 17 15 14 39 39 H 1.09007 * 109.47228 * 60.00267 * 17 15 14 40 40 H 0.96998 * 119.99308 * 179.97438 * 22 21 19 41 41 H 1.08999 * 110.37469 * 332.46637 * 27 8 7 42 42 H 1.09004 * 110.37105 * 94.80860 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2664 -0.1970 -1.1902 5 7 4.5878 -0.1969 -1.1897 6 6 5.2509 -0.0093 -0.0642 7 6 4.5591 0.1894 1.1316 8 7 5.2596 0.3873 2.3156 9 6 6.1216 1.5801 2.2263 10 6 5.7227 2.5201 3.3835 11 6 5.0501 1.5589 4.3985 12 1 5.7966 1.0526 5.0105 13 6 4.0419 2.3050 5.2746 14 7 4.7508 3.2607 6.1293 15 6 4.0613 4.0352 6.9903 16 8 2.8540 3.9413 7.0572 17 6 4.7906 5.0178 7.8698 18 16 3.5977 5.9018 8.9052 19 6 4.6910 6.9522 9.8029 20 1 5.7543 6.9090 9.6185 21 6 4.1856 7.8361 10.7463 22 7 5.0023 8.6211 11.4166 23 14 2.3465 7.9113 11.0647 24 1 1.9903 6.9497 12.1389 25 1 1.9729 9.2852 11.4865 26 1 1.6141 7.5587 9.8219 27 6 4.3346 0.5593 3.4560 28 7 3.2351 0.1946 1.1364 29 1 2.7272 -0.3512 -2.1131 30 1 6.3308 -0.0103 -0.0683 31 1 7.1675 1.2902 2.3279 32 1 5.9645 2.0807 1.2710 33 1 6.6044 2.9878 3.8215 34 1 5.0152 3.2749 3.0403 35 1 3.3350 2.8397 4.6403 36 1 3.5031 1.5908 5.8973 37 1 5.7163 3.3366 6.0750 38 1 5.4969 4.4828 8.5046 39 1 5.3301 5.7318 7.2474 40 1 4.6490 9.2390 12.0756 41 1 3.3850 0.9720 3.1155 42 1 4.1758 -0.3928 3.9626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100959205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:04 Heat of formation + Delta-G solvation = 62.985410 kcal Electronic energy + Delta-G solvation = -25956.749349 eV Core-core repulsion = 22064.013254 eV Total energy + Delta-G solvation = -3892.736095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.19320 -39.97849 -39.03350 -37.26087 -35.63547 -34.77117 -33.11542 -32.45873 -30.91199 -29.97885 -29.23890 -26.58396 -25.71915 -25.46573 -24.20190 -22.26572 -21.13262 -20.42201 -19.75105 -18.49429 -17.93498 -17.59770 -17.14854 -16.92883 -16.34146 -15.95198 -15.49957 -15.29146 -14.96888 -14.40771 -14.18748 -14.11747 -13.95528 -13.87468 -13.72970 -13.62333 -13.36038 -13.27853 -12.97512 -12.80386 -12.72630 -12.38738 -12.01264 -11.84830 -11.75204 -11.38008 -11.28377 -11.17282 -11.02416 -10.63321 -10.52191 -10.00905 -9.87806 -9.58366 -9.07432 -9.02343 -8.99791 -8.52484 -6.94353 -6.31044 -4.02958 -0.37393 0.28256 1.79818 2.16182 2.61989 2.70633 2.87757 2.93120 3.11248 3.26832 3.32264 3.49175 3.50699 3.59888 3.67397 3.80132 4.06303 4.14814 4.25219 4.31405 4.39587 4.57478 4.65978 4.70122 4.81284 4.85515 5.04308 5.08099 5.21790 5.22961 5.26866 5.36417 5.39353 5.53554 5.64270 5.72914 5.73787 5.84764 5.97249 6.17292 6.44450 6.46607 6.76003 6.92623 7.54051 7.92002 8.39187 8.44053 9.15204 10.78101 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.001781 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.387463 B =15721.009846 C =16700.065958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C 0.262 3.738 3 C 0.176 3.824 4 C 0.071 3.929 5 N -0.412 5.412 6 C 0.076 3.924 7 C 0.274 3.726 8 N -0.460 5.460 9 C 0.045 3.955 10 C -0.139 4.139 11 C -0.110 4.110 12 H 0.097 0.903 13 C 0.133 3.867 14 N -0.736 5.736 15 C 0.530 3.470 16 O -0.518 6.518 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.047 3.953 28 N -0.447 5.447 29 H 0.181 0.819 30 H 0.182 0.818 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.399 0.601 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.089 0.911 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.691 -19.714 -26.203 33.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.045 5.045 2 C -0.057 4.057 3 C 0.035 3.965 4 C -0.091 4.091 5 N -0.124 5.124 6 C -0.091 4.091 7 C 0.036 3.964 8 N -0.177 5.177 9 C -0.080 4.080 10 C -0.177 4.177 11 C -0.129 4.129 12 H 0.115 0.885 13 C 0.008 3.992 14 N -0.391 5.391 15 C 0.316 3.684 16 O -0.393 6.393 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.079 4.079 28 N -0.168 5.168 29 H 0.198 0.802 30 H 0.199 0.801 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.233 0.767 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.270 -20.148 -25.851 32.854 hybrid contribution 1.257 0.840 0.291 1.540 sum 3.527 -19.308 -25.560 32.226 Atomic orbital electron populations 1.81321 1.11218 1.06093 1.05847 1.24706 0.91290 0.95014 0.94649 1.17155 0.87122 1.01202 0.91040 1.23610 0.90615 0.96873 0.97951 1.68555 1.07748 1.08160 1.27960 1.23692 1.02281 0.96271 0.86847 1.21002 0.87935 0.95091 0.92400 1.60852 1.19116 1.37025 1.00719 1.23068 0.97992 0.87309 0.99616 1.22918 1.01985 0.97684 0.95103 1.22585 0.98166 0.95891 0.96269 0.88464 1.21152 0.93915 0.91540 0.92578 1.45908 1.10726 1.41001 1.41438 1.20290 0.87873 0.80594 0.79644 1.90713 1.14086 1.67374 1.67087 1.23274 1.03343 0.99963 1.00876 1.84823 1.12335 1.47097 1.47331 1.22311 0.95554 1.23966 1.25103 0.89374 1.24716 0.98562 0.93853 0.94191 1.69937 1.35140 1.22451 1.24100 0.86736 0.85369 0.78362 0.81393 1.19188 1.19931 1.15942 1.23119 0.95433 1.00594 0.88790 1.68198 1.08390 1.12143 1.28094 0.80168 0.80072 0.88328 0.91328 0.89292 0.90371 0.91415 0.91067 0.76681 0.88467 0.88480 0.91930 0.89307 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -3.86 18.54 41.83 0.78 -3.09 16 2 C 0.26 2.15 15.56 -22.47 -0.35 1.80 16 3 C 0.18 1.18 6.58 -84.91 -0.56 0.62 16 4 C 0.07 0.34 10.92 -16.99 -0.19 0.16 16 5 N -0.41 -2.31 10.48 -12.53 -0.13 -2.44 16 6 C 0.08 0.36 10.20 -17.00 -0.17 0.19 16 7 C 0.27 1.70 6.14 -154.87 -0.95 0.75 16 8 N -0.46 -2.56 5.20 -169.86 -0.88 -3.45 16 9 C 0.05 0.17 6.46 -2.83 -0.02 0.16 16 10 C -0.14 -0.67 6.12 -24.91 -0.15 -0.83 16 11 C -0.11 -0.66 3.10 -88.49 -0.27 -0.93 16 12 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 13 C 0.13 1.27 5.12 -4.04 -0.02 1.25 16 14 N -0.74 -8.23 5.41 -60.30 -0.33 -8.56 16 15 C 0.53 8.94 7.85 -10.99 -0.09 8.85 16 16 O -0.52 -10.94 15.86 5.56 0.09 -10.86 16 17 C -0.12 -2.30 6.16 36.00 0.22 -2.08 16 18 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 19 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 20 H 0.09 2.61 8.03 -52.49 -0.42 2.18 16 21 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.33 13.97 55.49 0.78 -25.56 16 23 Si 0.86 21.69 27.74 -169.99 -4.72 16.98 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 27 C 0.05 0.31 5.85 -2.30 -0.01 0.30 16 28 N -0.45 -3.46 8.26 -10.15 -0.08 -3.55 16 29 H 0.18 0.36 8.06 -52.49 -0.42 -0.07 16 30 H 0.18 0.39 7.99 -52.49 -0.42 -0.03 16 31 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.23 7.17 -51.93 -0.37 -0.14 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.48 8.01 -51.93 -0.42 0.07 16 35 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 3.24 8.34 -40.82 -0.34 2.90 16 38 H 0.10 1.67 8.14 -51.92 -0.42 1.24 16 39 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.09 0.72 6.47 -51.93 -0.34 0.39 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -36.09 378.02 -8.41 -44.50 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -5.26 Total: -2.50 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.35 Total: -1.62 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.13 Total: -46.64 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.98 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.09 -8.41 -44.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100959205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.481 kcal (2) G-P(sol) polarization free energy of solvation -36.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds