Wall clock time and date at job start Wed Apr 1 2020 04:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39407 * 120.06331 * 80.55535 * 3 2 1 5 5 N 1.32135 * 120.04597 * 180.02562 * 4 3 2 6 6 C 1.31970 * 120.18450 * 359.97008 * 5 4 3 7 7 C 1.39569 * 120.12409 * 0.02562 * 6 5 4 8 8 N 1.38986 * 120.02127 * 180.02562 * 7 6 5 9 9 C 1.47440 * 110.99711 * 59.87143 * 8 7 6 10 10 C 1.54324 * 107.23249 * 123.26011 * 9 8 7 11 11 C 1.55134 * 103.01856 * 22.27889 * 10 9 8 12 12 H 1.08998 * 110.99001 * 82.44258 * 11 10 9 13 13 C 1.52998 * 110.98990 * 206.21902 * 11 10 9 14 14 N 1.46501 * 109.47382 * 293.54850 * 13 11 10 15 15 C 1.34780 * 120.00481 * 179.97438 * 14 13 11 16 16 O 1.21281 * 119.99484 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00183 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.47256 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00047 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99988 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99905 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99891 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99824 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.46984 * 90.00087 * 23 21 19 25 25 H 1.48499 * 109.47201 * 209.99644 * 23 21 19 26 26 H 1.48498 * 109.47237 * 330.00131 * 23 21 19 27 27 C 1.47843 * 110.99791 * 180.71062 * 8 7 6 28 28 N 1.32401 * 119.95494 * 359.75674 * 7 6 5 29 29 H 1.08000 * 119.98068 * 359.97438 * 4 3 2 30 30 H 1.07997 * 119.93758 * 179.97438 * 6 5 4 31 31 H 1.09006 * 109.88821 * 242.65933 * 9 8 7 32 32 H 1.08994 * 109.89640 * 3.84888 * 9 8 7 33 33 H 1.08997 * 110.70700 * 140.66448 * 10 9 8 34 34 H 1.08998 * 110.70147 * 263.89402 * 10 9 8 35 35 H 1.09000 * 109.47177 * 53.54847 * 13 11 10 36 36 H 1.09000 * 109.47312 * 173.54538 * 13 11 10 37 37 H 0.97003 * 119.99843 * 0.02562 * 14 13 11 38 38 H 1.09000 * 109.47346 * 300.00291 * 17 15 14 39 39 H 1.09007 * 109.47228 * 60.00267 * 17 15 14 40 40 H 0.96998 * 119.99308 * 179.97438 * 22 21 19 41 41 H 1.08999 * 110.37469 * 332.46637 * 27 8 7 42 42 H 1.09004 * 110.37105 * 94.80860 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2664 -0.1970 -1.1902 5 7 4.5878 -0.1969 -1.1897 6 6 5.2509 -0.0093 -0.0642 7 6 4.5591 0.1894 1.1316 8 7 5.2596 0.3873 2.3156 9 6 6.1216 1.5801 2.2263 10 6 5.7227 2.5201 3.3835 11 6 5.0501 1.5589 4.3985 12 1 5.7966 1.0526 5.0105 13 6 4.0419 2.3050 5.2746 14 7 4.7508 3.2607 6.1293 15 6 4.0613 4.0352 6.9903 16 8 2.8540 3.9413 7.0572 17 6 4.7906 5.0178 7.8698 18 16 3.5977 5.9018 8.9052 19 6 4.6910 6.9522 9.8029 20 1 5.7543 6.9090 9.6185 21 6 4.1856 7.8361 10.7463 22 7 5.0023 8.6211 11.4166 23 14 2.3465 7.9113 11.0647 24 1 1.9903 6.9497 12.1389 25 1 1.9729 9.2852 11.4865 26 1 1.6141 7.5587 9.8219 27 6 4.3346 0.5593 3.4560 28 7 3.2351 0.1946 1.1364 29 1 2.7272 -0.3512 -2.1131 30 1 6.3308 -0.0103 -0.0683 31 1 7.1675 1.2902 2.3279 32 1 5.9645 2.0807 1.2710 33 1 6.6044 2.9878 3.8215 34 1 5.0152 3.2749 3.0403 35 1 3.3350 2.8397 4.6403 36 1 3.5031 1.5908 5.8973 37 1 5.7163 3.3366 6.0750 38 1 5.4969 4.4828 8.5046 39 1 5.3301 5.7318 7.2474 40 1 4.6490 9.2390 12.0756 41 1 3.3850 0.9720 3.1155 42 1 4.1758 -0.3928 3.9626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100959205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:03 Heat of formation + Delta-G solvation = 36.065129 kcal Electronic energy + Delta-G solvation = -25957.916700 eV Core-core repulsion = 22064.013254 eV Total energy + Delta-G solvation = -3893.903446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.62534 -40.83887 -39.94652 -37.93990 -36.44584 -35.36398 -34.67072 -33.85116 -31.77237 -30.41768 -30.29158 -27.87973 -27.15759 -26.14710 -24.74405 -22.72933 -21.83369 -21.52689 -20.30020 -19.83445 -18.95326 -18.02233 -17.83460 -17.76535 -17.33870 -17.12123 -16.74154 -16.60724 -16.10324 -15.62353 -15.08040 -14.93602 -14.76860 -14.68645 -14.56080 -14.43508 -14.38180 -14.30027 -13.83543 -13.66209 -13.50057 -13.34260 -13.10928 -12.99880 -12.82551 -12.67737 -12.31738 -12.22558 -11.95351 -11.86821 -11.64965 -11.17328 -11.03332 -10.92768 -10.52567 -10.44404 -10.15063 -9.44076 -8.99576 -8.51667 -6.22072 -0.81508 -0.14271 0.99261 1.18948 1.30693 1.46519 1.55455 1.57069 1.61170 2.12194 2.18362 2.24954 2.43153 2.65003 2.72672 2.86675 3.13242 3.25427 3.37402 3.54110 3.70829 3.76224 3.92908 3.98662 4.22764 4.26424 4.30660 4.32289 4.36797 4.48532 4.60650 4.67368 4.74370 4.91360 4.96716 5.01431 5.07567 5.26186 5.36586 5.41300 5.70971 5.73689 5.99922 6.11768 6.20073 6.47978 6.51190 6.93952 7.20788 8.60480 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.001781 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.387463 B =15721.009846 C =16700.065958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.286 3.714 3 C 0.156 3.844 4 C 0.087 3.913 5 N -0.425 5.425 6 C 0.094 3.906 7 C 0.262 3.738 8 N -0.456 5.456 9 C 0.046 3.954 10 C -0.138 4.138 11 C -0.096 4.096 12 H 0.115 0.885 13 C 0.134 3.866 14 N -0.706 5.706 15 C 0.534 3.466 16 O -0.567 6.567 17 C -0.110 4.110 18 S -0.182 6.182 19 C -0.526 4.526 20 H 0.065 0.935 21 C 0.046 3.954 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.260 1.260 26 H -0.239 1.239 27 C 0.049 3.951 28 N -0.472 5.472 29 H 0.208 0.792 30 H 0.212 0.788 31 H 0.124 0.876 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.419 0.581 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.277 0.723 41 H 0.068 0.932 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.613 -20.898 -27.913 35.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.032 4.032 3 C 0.016 3.984 4 C -0.073 4.073 5 N -0.137 5.137 6 C -0.074 4.074 7 C 0.024 3.976 8 N -0.174 5.174 9 C -0.079 4.079 10 C -0.176 4.176 11 C -0.115 4.115 12 H 0.133 0.867 13 C 0.010 3.990 14 N -0.361 5.361 15 C 0.319 3.681 16 O -0.445 6.445 17 C -0.261 4.261 18 S 0.044 5.956 19 C -0.674 4.674 20 H 0.083 0.917 21 C -0.160 4.160 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.184 1.184 26 H -0.163 1.163 27 C -0.078 4.078 28 N -0.193 5.193 29 H 0.224 0.776 30 H 0.229 0.771 31 H 0.142 0.858 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.256 0.744 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.234 -21.351 -27.604 35.154 hybrid contribution 0.840 1.111 0.710 1.564 sum 5.074 -20.240 -26.894 34.039 Atomic orbital electron populations 1.81330 1.12563 1.08146 1.07407 1.24946 0.91541 0.93477 0.93211 1.17156 0.86228 1.03359 0.91706 1.23985 0.90544 0.94666 0.98105 1.68686 1.07844 1.08944 1.28218 1.24155 1.03498 0.93824 0.85880 1.21229 0.87510 0.95682 0.93206 1.60958 1.18611 1.37768 1.00066 1.23200 0.98784 0.86471 0.99401 1.22937 1.02149 0.97335 0.95189 1.22463 0.97360 0.95741 0.95970 0.86659 1.21222 0.94711 0.90833 0.92271 1.45623 1.11625 1.39356 1.39454 1.19990 0.87143 0.80830 0.80135 1.90705 1.16012 1.69000 1.68822 1.23265 1.01868 1.00335 1.00588 1.84797 1.14626 1.47569 1.48602 1.22453 0.95093 1.24471 1.25393 0.91688 1.25539 1.02548 0.93704 0.94176 1.70011 1.36992 1.23363 1.24981 0.85891 0.80530 0.79017 0.81080 1.18774 1.18406 1.16252 1.22994 0.95048 1.00391 0.89382 1.68097 1.09547 1.12755 1.28949 0.77572 0.77147 0.85815 0.90685 0.87418 0.91983 0.92963 0.92122 0.74355 0.86590 0.86581 0.91399 0.91329 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.14 18.54 19.00 0.35 -8.79 16 2 C 0.29 4.81 15.56 88.33 1.37 6.19 16 3 C 0.16 2.00 6.58 40.47 0.27 2.26 16 4 C 0.09 0.69 10.92 84.93 0.93 1.62 16 5 N -0.42 -3.68 10.48 -193.56 -2.03 -5.71 16 6 C 0.09 0.62 10.20 84.99 0.87 1.49 16 7 C 0.26 2.76 6.14 133.17 0.82 3.58 16 8 N -0.46 -3.98 5.20 -691.31 -3.60 -7.57 16 9 C 0.05 0.19 6.46 86.65 0.56 0.75 16 10 C -0.14 -0.94 6.12 31.77 0.19 -0.74 16 11 C -0.10 -0.93 3.10 -9.41 -0.03 -0.96 16 12 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 13 C 0.13 2.41 5.12 86.38 0.44 2.86 16 14 N -0.71 -14.30 5.41 -463.06 -2.50 -16.80 16 15 C 0.53 17.33 7.85 87.65 0.69 18.02 16 16 O -0.57 -23.92 15.86 -3.03 -0.05 -23.97 16 17 C -0.11 -3.91 6.16 71.23 0.44 -3.47 16 18 S -0.18 -9.10 18.55 -56.49 -1.05 -10.15 16 19 C -0.53 -30.21 10.04 67.96 0.68 -29.53 16 20 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 21 C 0.05 2.67 5.50 84.86 0.47 3.14 16 22 N -0.92 -55.24 13.97 21.65 0.30 -54.93 16 23 Si 0.91 44.95 27.74 68.60 1.90 46.85 16 24 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 26 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 27 C 0.05 0.58 5.85 86.77 0.51 1.09 16 28 N -0.47 -7.03 8.26 -186.04 -1.54 -8.56 16 29 H 0.21 0.37 8.06 -2.91 -0.02 0.34 16 30 H 0.21 0.02 7.99 -2.91 -0.02 0.00 16 31 H 0.12 -0.03 8.14 -2.38 -0.02 -0.04 16 32 H 0.07 0.26 7.17 -2.39 -0.02 0.24 16 33 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.06 0.65 8.01 -2.39 -0.02 0.63 16 35 H 0.05 1.14 8.11 -2.39 -0.02 1.12 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.42 5.34 8.34 -92.71 -0.77 4.57 16 38 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 39 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.07 1.12 6.47 -2.39 -0.02 1.11 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -80.57 378.02 0.26 -80.31 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 0.26 Total: 3.04 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 8.20 Total: 6.28 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -9.01 Total: -102.37 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.05 Total: -23.97 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.90 Total: 46.85 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.15 kcal Total: -80.57 0.26 -80.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100959205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.375 kcal (2) G-P(sol) polarization free energy of solvation -80.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds