Wall clock time and date at job start Wed Apr 1 2020 03:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 N 1.33030 * 120.17713 * 57.08819 * 3 2 1 5 5 C 1.31837 * 119.99035 * 180.02562 * 4 3 2 6 6 C 1.38643 * 120.35295 * 0.02562 * 5 4 3 7 7 N 1.32119 * 120.35115 * 359.72251 * 6 5 4 8 8 C 1.32733 * 119.99782 * 0.55176 * 7 6 5 9 9 N 1.38407 * 120.16910 * 179.72228 * 8 7 6 10 10 C 1.47846 * 110.99535 * 119.85507 * 9 8 7 11 11 C 1.54915 * 104.79538 * 213.63315 * 10 9 8 12 12 C 1.55138 * 101.64918 * 37.06908 * 11 10 9 13 13 H 1.09005 * 110.70206 * 82.73348 * 12 11 10 14 14 C 1.52998 * 110.85394 * 205.89458 * 12 11 10 15 15 N 1.46508 * 109.47096 * 288.68996 * 14 12 11 16 16 C 1.34775 * 119.99810 * 180.02562 * 15 14 12 17 17 O 1.21274 * 120.00314 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99602 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47096 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00062 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00150 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99910 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00113 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00078 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46869 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47418 * 119.99648 * 24 22 20 27 27 H 1.48495 * 109.47316 * 239.99880 * 24 22 20 28 28 C 1.47437 * 111.00375 * 359.01010 * 9 8 7 29 29 H 1.07999 * 119.82211 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.82784 * 180.02562 * 6 5 4 31 31 H 1.08995 * 110.38030 * 332.46230 * 10 9 8 32 32 H 1.09000 * 110.37255 * 94.80885 * 10 9 8 33 33 H 1.08995 * 110.99221 * 155.16374 * 11 10 9 34 34 H 1.09001 * 110.98790 * 278.98277 * 11 10 9 35 35 H 1.08997 * 109.47370 * 48.68439 * 14 12 11 36 36 H 1.09003 * 109.47050 * 168.69062 * 14 12 11 37 37 H 0.97003 * 120.00099 * 359.97438 * 15 14 12 38 38 H 1.08997 * 109.47631 * 299.99680 * 18 16 15 39 39 H 1.09003 * 109.46985 * 60.00092 * 18 16 15 40 40 H 0.97000 * 119.99884 * 180.02562 * 23 22 20 41 41 H 1.08998 * 109.89349 * 242.66212 * 28 9 8 42 42 H 1.08999 * 109.89127 * 3.85276 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2370 -0.6239 -0.9654 5 6 4.5554 -0.6214 -0.9616 6 6 5.2518 0.0293 0.0453 7 7 4.6013 0.6581 1.0081 8 6 3.2740 0.6598 1.0209 9 7 2.5890 1.3126 2.0310 10 6 1.7248 2.3790 1.4816 11 6 1.7356 3.4915 2.5595 12 6 3.2013 3.4249 3.0638 13 1 3.8615 3.9891 2.4050 14 6 3.3066 3.9384 4.5012 15 7 3.1137 5.3906 4.5163 16 6 3.1650 6.0651 5.6820 17 8 3.3705 5.4699 6.7185 18 6 2.9671 7.5590 5.6974 19 16 3.0916 8.1665 7.3979 20 6 2.8295 9.8878 7.1278 21 1 2.6589 10.2576 6.1275 22 6 2.8423 10.7685 8.2006 23 7 3.0507 10.3178 9.4197 24 14 2.5637 12.5933 7.9143 25 1 2.3551 12.8408 6.4650 26 1 1.3644 13.0355 8.6701 27 1 3.7507 13.3543 8.3801 28 6 3.5233 1.9171 2.9981 29 1 5.0958 -1.1290 -1.7469 30 1 6.3318 0.0263 0.0400 31 1 2.1350 2.7548 0.5443 32 1 0.7116 2.0064 1.3311 33 1 1.5182 4.4644 2.1187 34 1 1.0355 3.2634 3.3631 35 1 2.5401 3.4637 5.1137 36 1 4.2917 3.6985 4.9014 37 1 2.9497 5.8668 3.6872 38 1 3.7336 8.0334 5.0848 39 1 1.9820 7.7991 5.2974 40 1 3.0592 10.9333 10.1694 41 1 3.3844 1.4651 3.9802 42 1 4.5501 1.7715 2.6625 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100960066.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:30 Heat of formation + Delta-G solvation = 38.730350 kcal Electronic energy + Delta-G solvation = -26084.732749 eV Core-core repulsion = 22190.944876 eV Total energy + Delta-G solvation = -3893.787873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.68470 -40.79457 -39.95159 -37.90440 -36.46305 -35.27392 -34.57821 -33.85112 -31.73226 -30.58243 -30.25776 -27.70607 -26.95847 -26.15689 -24.71145 -22.66775 -21.80210 -21.48930 -20.76235 -19.80629 -19.06423 -18.65812 -17.78647 -17.45945 -16.87589 -16.73147 -16.50913 -16.31905 -15.99722 -15.63781 -15.35597 -15.07259 -14.98712 -14.67968 -14.46959 -14.30720 -14.28642 -14.09421 -13.83858 -13.67969 -13.38929 -13.18498 -13.15062 -12.92349 -12.88106 -12.59996 -12.37009 -12.18090 -11.99557 -11.73500 -11.67676 -11.15393 -11.03944 -10.93454 -10.34604 -10.25652 -10.09913 -9.45338 -8.65578 -8.34289 -6.11948 -0.76163 -0.08000 1.28127 1.32618 1.41754 1.48157 1.58852 1.64011 1.69233 2.08598 2.26020 2.30375 2.36948 2.69639 2.99577 3.00025 3.27257 3.34404 3.45137 3.48642 3.72269 3.82866 4.01420 4.02205 4.06107 4.23743 4.27142 4.32744 4.36327 4.53254 4.54448 4.64120 4.76429 4.80463 4.87809 5.00262 5.09779 5.21166 5.33984 5.42887 5.45485 5.67661 6.03623 6.20677 6.25683 6.52391 6.56613 7.07336 7.27013 8.75111 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.001650 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.207216 B =16968.260450 C =17289.990304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.289 3.711 3 C 0.092 3.908 4 N -0.407 5.407 5 C 0.038 3.962 6 C 0.134 3.866 7 N -0.486 5.486 8 C 0.310 3.690 9 N -0.476 5.476 10 C 0.047 3.953 11 C -0.122 4.122 12 C -0.102 4.102 13 H 0.107 0.893 14 C 0.135 3.865 15 N -0.710 5.710 16 C 0.534 3.466 17 O -0.567 6.567 18 C -0.130 4.130 19 S -0.154 6.154 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.274 1.274 28 C 0.041 3.959 29 H 0.224 0.776 30 H 0.227 0.773 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.416 0.584 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.271 0.729 41 H 0.087 0.913 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 -20.812 -26.943 34.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.028 4.028 3 C -0.050 4.050 4 N -0.123 5.123 5 C -0.127 4.127 6 C -0.031 4.031 7 N -0.205 5.205 8 C 0.074 3.926 9 N -0.192 5.192 10 C -0.078 4.078 11 C -0.159 4.159 12 C -0.121 4.121 13 H 0.125 0.875 14 C 0.011 3.989 15 N -0.364 5.364 16 C 0.319 3.681 17 O -0.445 6.445 18 C -0.281 4.281 19 S 0.073 5.927 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.180 1.180 26 H -0.201 1.201 27 H -0.200 1.200 28 C -0.086 4.086 29 H 0.240 0.760 30 H 0.244 0.756 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.253 0.747 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.478 -22.096 -24.741 33.473 hybrid contribution 0.111 2.035 -1.345 2.442 sum 4.589 -20.061 -26.086 33.226 Atomic orbital electron populations 1.81274 1.12205 1.08378 1.08224 1.24830 0.91653 0.93372 0.92932 1.16598 0.86568 1.05069 0.96734 1.68258 1.11593 1.11849 1.20608 1.24486 0.88159 0.99211 1.00864 1.24882 1.04269 0.87100 0.86864 1.68539 1.05800 1.19544 1.26656 1.20628 0.89714 0.93771 0.88479 1.60337 1.19831 1.27685 1.11333 1.23261 0.97017 0.89318 0.98187 1.22883 0.96243 0.98937 0.97884 1.22479 0.97822 0.96325 0.95494 0.87502 1.21276 1.01774 0.79343 0.96480 1.45677 1.73502 1.08434 1.08799 1.20034 0.75570 0.88669 0.83778 1.90699 1.49312 1.70494 1.33994 1.23375 1.06638 0.94938 1.03143 1.85599 1.94432 1.06744 1.05887 1.23243 1.56611 0.92383 0.97039 0.89846 1.26131 0.94031 1.05072 0.94001 1.70192 1.47418 1.37370 0.99816 0.84906 0.78006 0.75965 0.79074 1.17967 1.20051 1.19951 1.23006 0.97715 0.91989 0.95867 0.75967 0.75649 0.90972 0.90212 0.87697 0.90469 0.92298 0.91608 0.74658 0.87085 0.87224 0.92026 0.89497 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.96 18.13 19.01 0.34 -9.62 16 2 C 0.29 5.72 13.00 88.33 1.15 6.87 16 3 C 0.09 1.42 6.48 40.77 0.26 1.69 16 4 N -0.41 -5.04 10.42 -187.89 -1.96 -6.99 16 5 C 0.04 0.13 11.21 84.79 0.95 1.08 16 6 C 0.13 0.32 11.22 84.75 0.95 1.27 16 7 N -0.49 -4.82 8.11 -191.79 -1.55 -6.37 16 8 C 0.31 4.29 6.13 133.51 0.82 5.11 16 9 N -0.48 -7.09 4.93 -690.60 -3.40 -10.49 16 10 C 0.05 0.62 5.32 86.78 0.46 1.08 16 11 C -0.12 -1.43 6.45 31.98 0.21 -1.23 16 12 C -0.10 -1.21 2.95 -9.61 -0.03 -1.24 16 13 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 14 C 0.14 2.58 4.98 86.38 0.43 3.01 16 15 N -0.71 -15.73 5.47 -463.05 -2.53 -18.26 16 16 C 0.53 18.68 7.85 87.66 0.69 19.37 16 17 O -0.57 -25.58 15.86 -3.01 -0.05 -25.63 16 18 C -0.13 -4.93 6.16 71.24 0.44 -4.50 16 19 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 20 C -0.54 -30.78 9.50 67.96 0.65 -30.14 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.70 5.49 84.86 0.47 1.16 16 23 N -0.91 -55.77 13.22 21.65 0.29 -55.48 16 24 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 26 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 28 C 0.04 0.53 6.36 86.65 0.55 1.09 16 29 H 0.22 -1.21 8.06 -2.91 -0.02 -1.23 16 30 H 0.23 -1.52 8.06 -2.91 -0.02 -1.55 16 31 H 0.07 0.82 7.79 -2.39 -0.02 0.80 16 32 H 0.08 1.29 6.67 -2.39 -0.02 1.28 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.13 7.95 -2.39 -0.02 1.11 16 35 H 0.06 1.32 8.01 -2.39 -0.02 1.30 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.42 6.20 8.47 -92.71 -0.79 5.42 16 38 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 39 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.09 1.27 7.82 -2.39 -0.02 1.25 16 42 H 0.11 1.40 5.92 -2.39 -0.01 1.38 16 Total: -1.00 -84.86 376.24 0.28 -84.58 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.29 Total: 7.98 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 7.99 Total: 4.62 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -8.82 Total: -107.22 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.05 Total: -25.63 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -84.86 0.28 -84.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100960066.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.306 kcal (2) G-P(sol) polarization free energy of solvation -84.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds