Wall clock time and date at job start Wed Apr 1 2020 04:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53947 * 113.74330 * 14.03356 * 14 13 12 16 16 N 1.47807 * 86.03671 * 222.08595 * 15 14 13 17 17 C 1.34784 * 134.45239 * 204.64200 * 16 15 14 18 18 O 1.21279 * 119.99539 * 179.86985 * 17 16 15 19 19 C 1.50695 * 120.00127 * 359.87039 * 17 16 15 20 20 C 1.50704 * 109.47126 * 179.97438 * 19 17 16 21 21 C 1.38421 * 122.53711 * 90.00067 * 20 19 17 22 22 C 1.33387 * 114.91997 * 179.97438 * 21 20 19 23 23 S 1.75881 * 109.59435 * 359.97438 * 22 21 20 24 24 C 1.33389 * 122.53942 * 269.70799 * 20 19 17 25 25 C 1.47576 * 91.05211 * 24.54811 * 16 15 14 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 32 32 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 33 33 H 1.09000 * 112.94374 * 145.62885 * 14 13 12 34 34 H 1.09002 * 113.76976 * 336.35198 * 15 14 13 35 35 H 1.08999 * 113.76656 * 107.74318 * 15 14 13 36 36 H 1.08996 * 109.47203 * 299.99731 * 19 17 16 37 37 H 1.08998 * 109.47239 * 59.99836 * 19 17 16 38 38 H 1.07995 * 122.54411 * 359.97438 * 21 20 19 39 39 H 1.08003 * 125.20571 * 179.97438 * 22 21 20 40 40 H 1.08001 * 125.20303 * 0.02634 * 24 20 19 41 41 H 1.09000 * 113.76645 * 221.14620 * 25 16 15 42 42 H 1.09000 * 113.87057 * 89.76846 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6204 -5.4811 -1.0649 13 7 -0.2302 -6.4183 -0.5863 14 6 -0.9688 -7.3968 -1.3882 15 6 -0.4598 -7.5229 -2.8356 16 7 -1.8851 -7.5664 -3.2244 17 6 -2.5615 -8.0673 -4.2772 18 8 -3.7678 -7.9550 -4.3318 19 6 -1.8187 -8.7668 -5.3862 20 6 -2.7988 -9.2295 -6.4334 21 6 -3.1634 -8.4418 -7.5116 22 6 -4.0410 -9.0019 -8.3455 23 16 -4.4536 -10.6128 -7.7728 24 6 -3.3763 -10.4313 -6.3944 25 6 -2.2702 -6.8437 -1.9967 26 7 -0.2825 -6.2992 0.6943 27 7 0.4867 -5.3442 1.0829 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6849 -3.7190 -0.8822 31 1 2.6842 -3.7101 0.8977 32 1 0.8827 -5.3105 -2.0986 33 1 -1.0933 -8.3540 -0.8818 34 1 0.0668 -6.6387 -3.1947 35 1 0.0791 -8.4497 -3.0325 36 1 -1.1042 -8.0776 -5.8361 37 1 -1.2872 -9.6278 -4.9809 38 1 -2.7675 -7.4490 -7.6660 39 1 -4.4375 -8.5373 -9.2363 40 1 -3.2091 -11.1780 -5.6322 41 1 -3.1743 -7.2291 -1.5253 42 1 -2.2774 -5.7593 -2.1071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105144716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:19 Heat of formation + Delta-G solvation = 164.759927 kcal Electronic energy + Delta-G solvation = -26251.170951 eV Core-core repulsion = 22362.848131 eV Total energy + Delta-G solvation = -3888.322820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.15499 -40.82105 -39.08119 -37.61812 -35.02150 -33.56041 -31.97841 -31.76710 -29.98990 -29.70658 -28.07128 -26.94719 -25.87140 -24.27868 -23.29648 -22.84429 -21.18200 -20.72966 -19.72764 -19.01083 -18.04098 -18.01139 -17.56729 -17.05249 -16.56263 -15.96158 -15.59571 -15.37245 -14.89517 -14.57891 -14.20684 -13.85749 -13.79494 -13.43372 -13.42425 -13.29870 -13.19056 -12.94854 -12.79193 -12.66828 -12.57558 -12.14508 -12.09740 -11.78358 -11.31160 -11.15814 -10.91733 -10.80768 -10.58220 -10.30288 -10.14019 -9.94909 -9.74917 -9.33300 -9.16085 -8.93602 -8.87908 -8.75559 -6.93509 -5.74921 -3.04942 0.64233 1.30093 1.60480 1.67330 1.84622 2.10692 2.32434 2.65020 2.83891 3.44116 3.45610 3.50110 3.51325 3.77122 4.17927 4.23886 4.35065 4.48462 4.60028 4.63253 4.70010 4.76427 4.80069 4.93750 5.01150 5.07958 5.13343 5.19910 5.23595 5.32673 5.43186 5.59838 5.64669 5.74719 5.97604 6.04929 6.14925 6.33997 6.60499 6.64796 6.74129 7.04591 7.66353 7.69540 8.42179 8.75585 9.53917 10.09149 10.44800 11.47628 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.001831 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.465151 B =15288.403199 C =16492.230876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.232 3.768 11 C 0.000 4.000 12 C -0.046 4.046 13 N -0.295 5.295 14 C 0.113 3.887 15 C 0.099 3.901 16 N -0.646 5.646 17 C 0.544 3.456 18 O -0.519 6.519 19 C -0.075 4.075 20 C -0.088 4.088 21 C -0.122 4.122 22 C -0.211 4.211 23 S 0.098 5.902 24 C -0.199 4.199 25 C 0.104 3.896 26 N -0.090 5.090 27 N -0.250 5.250 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.189 0.811 33 H 0.145 0.855 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.140 0.860 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.101 0.899 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.853 -25.817 -16.824 31.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.103 3.897 11 C -0.138 4.138 12 C -0.196 4.196 13 N -0.090 5.090 14 C 0.009 3.991 15 C -0.025 4.025 16 N -0.385 5.385 17 C 0.334 3.666 18 O -0.393 6.393 19 C -0.117 4.117 20 C -0.101 4.101 21 C -0.152 4.152 22 C -0.346 4.346 23 S 0.362 5.638 24 C -0.335 4.335 25 C -0.019 4.019 26 N -0.069 5.069 27 N -0.118 5.118 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.206 0.794 33 H 0.163 0.837 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.158 0.842 39 H 0.182 0.818 40 H 0.180 0.820 41 H 0.119 0.881 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.122 -27.439 -16.288 32.491 hybrid contribution 1.383 2.497 -0.530 2.903 sum -4.739 -24.942 -16.818 30.454 Atomic orbital electron populations 1.69671 1.05173 1.25811 1.57331 1.24768 0.95530 0.97751 1.02840 0.86230 0.78465 0.83370 0.77861 1.21242 1.21748 1.21163 1.19178 0.91062 0.83802 1.43207 0.90914 1.42298 1.05965 0.99227 1.89566 1.18966 0.90048 0.81376 0.99351 1.22501 1.02360 1.00570 0.88332 1.23313 0.99149 0.95085 1.02064 1.47116 1.30871 1.24315 1.06684 1.23673 0.92457 0.92796 0.90164 1.23709 0.84603 1.04748 0.89472 1.49742 1.08842 1.57928 1.21969 1.20254 0.87461 0.78290 0.80634 1.90775 1.14026 1.57738 1.76748 1.20304 0.97122 1.01628 0.92646 1.18292 1.00824 0.93990 0.96946 1.20030 0.99551 1.01140 0.94499 1.25559 1.04866 0.98704 1.05498 1.84262 1.44560 1.15269 1.19716 1.25422 1.03155 1.01630 1.03248 1.23605 0.97664 0.98973 0.81682 1.78311 1.19396 1.16928 0.92240 1.75133 1.06293 1.04108 1.26221 0.93435 0.78105 0.94420 0.94257 0.79430 0.83706 0.87730 0.87702 0.87492 0.87730 0.84231 0.81759 0.81963 0.88114 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.54 5.59 -61.09 -0.34 -18.88 16 10 C 0.23 4.66 6.82 -5.19 -0.04 4.63 16 11 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 12 C -0.05 -0.62 10.72 -17.04 -0.18 -0.80 16 13 N -0.30 -3.63 3.54 -56.31 -0.20 -3.83 16 14 C 0.11 0.86 5.14 -70.15 -0.36 0.50 16 15 C 0.10 0.49 8.00 -2.84 -0.02 0.47 16 16 N -0.65 -5.00 3.61 -178.35 -0.64 -5.64 16 17 C 0.54 5.12 8.05 -10.98 -0.09 5.03 16 18 O -0.52 -7.28 16.76 5.56 0.09 -7.19 16 19 C -0.07 -0.45 5.71 -29.04 -0.17 -0.61 16 20 C -0.09 -0.70 4.29 -106.25 -0.46 -1.16 16 21 C -0.12 -0.99 9.98 -41.21 -0.41 -1.41 16 22 C -0.21 -1.59 11.23 29.04 0.33 -1.27 16 23 S 0.10 0.72 23.34 -107.50 -2.51 -1.78 16 24 C -0.20 -1.53 10.98 29.04 0.32 -1.21 16 25 C 0.10 0.92 8.64 -2.97 -0.03 0.90 16 26 N -0.09 -1.49 13.17 60.35 0.79 -0.69 16 27 N -0.25 -4.85 12.41 33.29 0.41 -4.44 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.39 10.66 7.66 -40.82 -0.31 10.35 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.19 1.81 6.74 -52.49 -0.35 1.45 16 33 H 0.15 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.47 6.31 -51.93 -0.33 0.14 16 35 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.11 0.45 8.13 -51.93 -0.42 0.03 16 37 H 0.10 0.36 8.12 -51.93 -0.42 -0.06 16 38 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.16 0.90 8.06 -52.48 -0.42 0.47 16 40 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -37.51 380.13 -8.05 -45.56 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.19 Total: 4.42 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.90 Total: -2.80 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.75 Total: -61.24 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.09 Total: -7.19 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.51 -8.05 -45.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105144716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.320 kcal (2) G-P(sol) polarization free energy of solvation -37.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds