Wall clock time and date at job start Wed Apr 1 2020 04:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53947 * 113.74330 * 14.03356 * 14 13 12 16 16 N 1.47807 * 86.03671 * 222.08595 * 15 14 13 17 17 C 1.34784 * 134.45239 * 204.64200 * 16 15 14 18 18 O 1.21279 * 119.99539 * 179.86985 * 17 16 15 19 19 C 1.50695 * 120.00127 * 359.87039 * 17 16 15 20 20 C 1.50704 * 109.47126 * 179.97438 * 19 17 16 21 21 C 1.38421 * 122.53711 * 90.00067 * 20 19 17 22 22 C 1.33387 * 114.91997 * 179.97438 * 21 20 19 23 23 S 1.75881 * 109.59435 * 359.97438 * 22 21 20 24 24 C 1.33389 * 122.53942 * 269.70799 * 20 19 17 25 25 C 1.47576 * 91.05211 * 24.54811 * 16 15 14 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 32 32 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 33 33 H 1.09000 * 112.94374 * 145.62885 * 14 13 12 34 34 H 1.09002 * 113.76976 * 336.35198 * 15 14 13 35 35 H 1.08999 * 113.76656 * 107.74318 * 15 14 13 36 36 H 1.08996 * 109.47203 * 299.99731 * 19 17 16 37 37 H 1.08998 * 109.47239 * 59.99836 * 19 17 16 38 38 H 1.07995 * 122.54411 * 359.97438 * 21 20 19 39 39 H 1.08003 * 125.20571 * 179.97438 * 22 21 20 40 40 H 1.08001 * 125.20303 * 0.02634 * 24 20 19 41 41 H 1.09000 * 113.76645 * 221.14620 * 25 16 15 42 42 H 1.09000 * 113.87057 * 89.76846 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6204 -5.4811 -1.0649 13 7 -0.2302 -6.4183 -0.5863 14 6 -0.9688 -7.3968 -1.3882 15 6 -0.4598 -7.5229 -2.8356 16 7 -1.8851 -7.5664 -3.2244 17 6 -2.5615 -8.0673 -4.2772 18 8 -3.7678 -7.9550 -4.3318 19 6 -1.8187 -8.7668 -5.3862 20 6 -2.7988 -9.2295 -6.4334 21 6 -3.1634 -8.4418 -7.5116 22 6 -4.0410 -9.0019 -8.3455 23 16 -4.4536 -10.6128 -7.7728 24 6 -3.3763 -10.4313 -6.3944 25 6 -2.2702 -6.8437 -1.9967 26 7 -0.2825 -6.2992 0.6943 27 7 0.4867 -5.3442 1.0829 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6849 -3.7190 -0.8822 31 1 2.6842 -3.7101 0.8977 32 1 0.8827 -5.3105 -2.0986 33 1 -1.0933 -8.3540 -0.8818 34 1 0.0668 -6.6387 -3.1947 35 1 0.0791 -8.4497 -3.0325 36 1 -1.1042 -8.0776 -5.8361 37 1 -1.2872 -9.6278 -4.9809 38 1 -2.7675 -7.4490 -7.6660 39 1 -4.4375 -8.5373 -9.2363 40 1 -3.2091 -11.1780 -5.6322 41 1 -3.1743 -7.2291 -1.5253 42 1 -2.2774 -5.7593 -2.1071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105144716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:19 Heat of formation + Delta-G solvation = 137.670480 kcal Electronic energy + Delta-G solvation = -26252.345638 eV Core-core repulsion = 22362.848131 eV Total energy + Delta-G solvation = -3889.497507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.29436 -41.50012 -39.70443 -38.29622 -36.77377 -34.77009 -33.57261 -32.45065 -31.60868 -30.42053 -28.64286 -27.81851 -27.26966 -25.16168 -24.71212 -23.93168 -22.34796 -21.78678 -20.33598 -19.56218 -19.38539 -18.68798 -18.55299 -18.12621 -17.43883 -16.87947 -16.54324 -16.33153 -16.03881 -15.84491 -15.46857 -15.12266 -14.88288 -14.50374 -14.25738 -14.05589 -13.94002 -13.86898 -13.65668 -13.56947 -13.33912 -13.10873 -12.96282 -12.71400 -12.63646 -12.57673 -12.47687 -12.11402 -11.85554 -11.79808 -11.69737 -11.12896 -10.99144 -10.91667 -10.19807 -9.97961 -9.70802 -9.31218 -8.99083 -7.91267 -5.21232 0.09454 0.58517 0.77174 1.04055 1.12142 1.44121 1.47809 1.53592 1.55232 1.61282 1.69108 2.00504 2.61490 2.81520 3.14330 3.40854 3.49455 3.65937 3.72017 3.87929 3.98094 4.03606 4.18092 4.24206 4.26405 4.33850 4.36504 4.44050 4.49510 4.55878 4.61486 4.64867 4.71121 4.76070 4.91072 5.11194 5.16491 5.22410 5.45630 5.52098 5.53577 5.66923 6.28393 6.43919 7.00280 7.35371 7.53734 8.07895 8.32598 9.32360 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.001831 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.465151 B =15288.403199 C =16492.230876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.080 4.080 3 Si 0.978 3.022 4 H -0.271 1.271 5 H -0.300 1.300 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.086 0.914 9 N -0.740 5.740 10 C 0.234 3.766 11 C -0.037 4.037 12 C -0.015 4.015 13 N -0.277 5.277 14 C 0.108 3.892 15 C 0.112 3.888 16 N -0.642 5.642 17 C 0.542 3.458 18 O -0.576 6.576 19 C -0.067 4.067 20 C -0.101 4.101 21 C -0.139 4.139 22 C -0.221 4.221 23 S 0.089 5.911 24 C -0.209 4.209 25 C 0.094 3.906 26 N -0.110 5.110 27 N -0.298 5.298 28 H 0.249 0.751 29 H 0.370 0.630 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.232 0.768 33 H 0.167 0.833 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.148 0.852 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.093 0.907 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 -27.279 -18.580 33.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.227 1.227 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.104 0.896 9 N -0.382 5.382 10 C 0.106 3.894 11 C -0.175 4.175 12 C -0.166 4.166 13 N -0.071 5.071 14 C 0.006 3.994 15 C -0.011 4.011 16 N -0.379 5.379 17 C 0.333 3.667 18 O -0.454 6.454 19 C -0.108 4.108 20 C -0.114 4.114 21 C -0.169 4.169 22 C -0.356 4.356 23 S 0.353 5.647 24 C -0.344 4.344 25 C -0.030 4.030 26 N -0.088 5.088 27 N -0.165 5.165 28 H 0.058 0.942 29 H 0.201 0.799 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.248 0.752 33 H 0.184 0.816 34 H 0.136 0.864 35 H 0.168 0.832 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.165 0.835 39 H 0.197 0.803 40 H 0.196 0.804 41 H 0.111 0.889 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.888 -28.962 -18.034 34.339 hybrid contribution 0.662 2.827 -0.016 2.903 sum -3.227 -26.135 -18.049 31.926 Atomic orbital electron populations 1.69852 1.06886 1.26049 1.59650 1.25641 0.96358 1.01373 1.03777 0.85141 0.77052 0.78733 0.78393 1.19647 1.22692 1.20529 1.19671 0.91833 0.84784 1.40998 0.89619 1.42526 1.05458 1.00750 1.89498 1.19007 0.90402 0.80151 0.99825 1.22308 1.03920 1.01486 0.89769 1.23761 0.96991 0.93154 1.02700 1.47423 1.29758 1.24122 1.05832 1.24154 0.91634 0.92149 0.91419 1.23982 0.83173 1.07703 0.86204 1.49741 1.10263 1.56874 1.21035 1.20911 0.86969 0.77664 0.81109 1.90755 1.16642 1.60015 1.78027 1.20399 0.96568 1.02974 0.90890 1.18589 1.01433 0.93997 0.97407 1.20305 0.99961 1.01710 0.94939 1.25849 1.04828 0.98792 1.06099 1.84250 1.44869 1.15471 1.20108 1.25720 1.02979 1.02220 1.03514 1.23548 0.98257 0.98232 0.82982 1.78202 1.19517 1.16790 0.94274 1.75059 1.07774 1.05582 1.28052 0.94197 0.79902 0.91474 0.95415 0.75183 0.81580 0.86408 0.83196 0.85083 0.84424 0.83480 0.80329 0.80434 0.88854 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 3 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 8 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.74 -37.86 5.59 -347.18 -1.94 -39.80 16 10 C 0.23 9.22 6.82 85.63 0.58 9.80 16 11 C -0.04 -1.27 6.61 41.60 0.28 -0.99 16 12 C -0.01 -0.35 10.72 83.49 0.89 0.54 16 13 N -0.28 -6.18 3.54 -332.06 -1.18 -7.35 16 14 C 0.11 1.31 5.14 46.75 0.24 1.55 16 15 C 0.11 0.54 8.00 86.44 0.69 1.23 16 16 N -0.64 -8.02 3.61 -836.56 -3.02 -11.05 16 17 C 0.54 8.98 8.05 87.65 0.71 9.69 16 18 O -0.58 -15.96 16.76 -3.03 -0.05 -16.01 16 19 C -0.07 -0.56 5.71 29.10 0.17 -0.40 16 20 C -0.10 -1.43 4.29 -20.92 -0.09 -1.52 16 21 C -0.14 -2.10 9.98 21.22 0.21 -1.89 16 22 C -0.22 -3.17 11.23 66.72 0.75 -2.42 16 23 S 0.09 1.26 23.34 -56.49 -1.32 -0.05 16 24 C -0.21 -2.90 10.98 66.72 0.73 -2.17 16 25 C 0.09 1.54 8.64 86.49 0.75 2.29 16 26 N -0.11 -3.54 13.17 37.02 0.49 -3.05 16 27 N -0.30 -11.62 12.41 -48.60 -0.60 -12.22 16 28 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 29 H 0.37 20.89 7.66 -92.71 -0.71 20.18 16 30 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 32 H 0.23 3.27 6.74 -2.91 -0.02 3.25 16 33 H 0.17 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.12 0.36 6.31 -2.39 -0.02 0.34 16 35 H 0.15 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H 0.13 0.50 8.13 -2.39 -0.02 0.48 16 37 H 0.14 0.25 8.12 -2.39 -0.02 0.23 16 38 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -85.93 380.13 2.26 -83.67 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.36 Total: 19.18 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 7.21 Total: -0.88 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -5.97 Total: -133.89 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.05 Total: -16.01 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -1.32 Total: -0.05 kcal Total: -85.93 2.26 -83.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105144716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.341 kcal (2) G-P(sol) polarization free energy of solvation -85.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds