Wall clock time and date at job start Wed Apr 1 2020 04:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38629 * 120.36205 * 2 1 4 4 C 1.39694 * 118.41845 * 179.97438 * 3 2 1 5 5 C 1.43202 * 120.51894 * 180.02562 * 4 3 2 6 6 N 4.80313 * 136.34658 * 0.02562 * 2 1 3 7 7 N 1.33186 * 118.96722 * 0.02562 * 4 3 2 8 8 C 1.32281 * 120.62082 * 359.97438 * 7 4 3 9 9 N 1.38436 * 119.13544 * 179.97438 * 8 7 4 10 10 C 1.46498 * 119.99571 * 0.02562 * 9 8 7 11 11 C 1.50706 * 109.46941 * 179.97438 * 10 9 8 12 12 C 1.30997 * 120.00297 * 127.15309 * 11 10 9 13 13 C 1.50697 * 119.99788 * 7.55904 * 12 11 10 14 14 N 1.46507 * 109.47113 * 127.00608 * 13 12 11 15 15 C 1.34770 * 120.00270 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99682 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00404 * 179.97438 * 15 14 13 18 18 S 1.80998 * 109.47330 * 180.02562 * 17 15 14 19 19 C 1.76207 * 99.99762 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99824 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99658 * 180.02562 * 19 18 17 22 22 N 1.31635 * 120.00243 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99827 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47341 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47376 * 119.99897 * 23 21 19 26 26 H 1.48505 * 109.47001 * 240.00020 * 23 21 19 27 27 N 1.32210 * 120.36726 * 180.25591 * 2 1 3 28 28 H 1.09002 * 109.47100 * 90.00031 * 1 2 3 29 29 H 1.09004 * 109.46903 * 209.99590 * 1 2 3 30 30 H 1.08998 * 109.47386 * 329.99665 * 1 2 3 31 31 H 1.07999 * 120.78776 * 0.02562 * 3 2 1 32 32 H 0.96998 * 120.00088 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.46986 * 299.99283 * 10 9 8 34 34 H 1.08999 * 109.47452 * 59.99452 * 10 9 8 35 35 H 1.08002 * 119.99251 * 307.15245 * 11 10 9 36 36 H 1.07997 * 119.99825 * 187.55873 * 12 11 10 37 37 H 1.08998 * 109.47198 * 247.00248 * 13 12 11 38 38 H 1.08995 * 109.47477 * 7.00907 * 13 12 11 39 39 H 0.97005 * 119.99457 * 359.97438 * 14 13 12 40 40 H 1.09000 * 109.47265 * 300.00591 * 17 15 14 41 41 H 1.09003 * 109.46868 * 60.00028 * 17 15 14 42 42 H 0.96997 * 119.99721 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2077 1.1962 0.0000 4 6 3.6038 1.1488 0.0005 5 6 4.3724 2.3570 0.0011 6 7 4.9822 3.3156 0.0015 7 7 4.2089 -0.0377 0.0005 8 6 3.5010 -1.1551 0.0005 9 7 4.1618 -2.3716 -0.0001 10 6 5.6262 -2.4096 0.0000 11 6 6.0915 -3.8430 -0.0001 12 6 6.9454 -4.2545 -0.9043 13 6 7.5924 -3.2627 -1.8362 14 7 9.0479 -3.4227 -1.7858 15 6 9.8389 -2.6368 -2.5427 16 8 9.3459 -1.7968 -3.2653 17 6 11.3360 -2.8010 -2.4904 18 16 12.1131 -1.6098 -3.6099 19 6 13.8095 -2.0134 -3.3563 20 1 14.0803 -2.7996 -2.6672 21 6 14.7976 -1.3201 -4.0414 22 7 14.4675 -0.3616 -4.8810 23 14 16.5959 -1.7484 -3.7732 24 1 16.6998 -2.8543 -2.7875 25 1 17.2009 -2.1740 -5.0608 26 1 17.3169 -0.5570 -3.2574 27 7 2.1753 -1.1407 -0.0051 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6865 2.1421 0.0004 32 1 3.6551 -3.1987 0.0003 33 1 6.0028 -1.9051 -0.8899 34 1 6.0028 -1.9057 0.8901 35 1 5.7209 -4.5310 0.7454 36 1 7.1857 -5.3046 -0.9817 37 1 7.2427 -3.4383 -2.8535 38 1 7.3275 -2.2506 -1.5305 39 1 9.4421 -4.0944 -1.2075 40 1 11.6855 -2.6247 -1.4732 41 1 11.6013 -3.8133 -2.7954 42 1 15.1581 0.1231 -5.3595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107049296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:38 Heat of formation + Delta-G solvation = 77.017501 kcal Electronic energy + Delta-G solvation = -25164.057396 eV Core-core repulsion = 21271.929779 eV Total energy + Delta-G solvation = -3892.127617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59687 -39.28658 -37.74530 -37.08853 -35.61769 -34.65386 -33.42971 -32.42068 -31.69821 -29.54359 -29.13439 -26.93206 -25.58636 -25.51302 -25.08386 -22.75468 -20.48315 -20.32753 -19.04580 -18.10297 -17.73691 -17.06263 -16.76998 -16.25316 -16.05074 -15.96045 -15.47674 -15.02248 -14.80903 -14.77819 -14.14845 -14.10979 -13.96602 -13.89961 -13.62106 -13.55300 -13.31518 -13.12403 -13.05673 -12.80428 -12.65351 -12.49250 -11.83871 -11.54762 -11.31896 -11.06457 -11.01309 -10.98245 -10.75397 -10.69764 -9.91794 -9.79972 -9.75854 -9.35915 -9.07096 -8.90012 -8.54656 -8.22252 -6.49186 -6.20977 -3.91551 0.06843 0.63350 1.37840 1.99231 2.52239 2.56121 2.96823 3.08637 3.09926 3.22214 3.29606 3.35294 3.47142 3.72991 3.78925 4.20841 4.20873 4.25965 4.39136 4.52622 4.65586 4.75104 4.84135 5.01520 5.13648 5.13872 5.14264 5.18803 5.28588 5.40141 5.49484 5.53475 5.68906 5.76468 5.89100 6.04322 6.13891 6.20029 6.27838 6.48479 6.58655 6.91228 6.94789 7.60541 7.68258 7.76843 8.36149 8.59586 9.24400 10.86520 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.001745 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.275297 B =16040.743910 C =17485.309119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.231 3.769 3 C -0.245 4.245 4 C 0.299 3.701 5 C 0.259 3.741 6 N -0.363 5.363 7 N -0.543 5.543 8 C 0.581 3.419 9 N -0.687 5.687 10 C 0.148 3.852 11 C -0.165 4.165 12 C -0.137 4.137 13 C 0.133 3.867 14 N -0.735 5.735 15 C 0.531 3.469 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.556 5.556 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.155 0.845 32 H 0.418 0.582 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.092 -6.646 14.093 33.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.081 3.919 3 C -0.274 4.274 4 C 0.150 3.850 5 C -0.059 4.059 6 N -0.039 5.039 7 N -0.268 5.268 8 C 0.223 3.777 9 N -0.323 5.323 10 C 0.025 3.975 11 C -0.185 4.185 12 C -0.156 4.156 13 C 0.010 3.990 14 N -0.390 5.390 15 C 0.317 3.683 16 O -0.390 6.390 17 C -0.303 4.303 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 N -0.280 5.280 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.173 0.827 32 H 0.256 0.744 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -29.189 -4.541 12.738 32.169 hybrid contribution 1.240 -1.629 1.296 2.423 sum -27.949 -6.170 14.034 31.877 Atomic orbital electron populations 1.20844 0.86986 1.04479 1.04205 1.21426 0.97336 0.86506 0.86635 1.22304 0.93258 1.01332 1.10458 1.16177 0.88868 0.86542 0.93417 1.24810 0.93416 0.92353 0.95312 1.81321 1.06190 1.11158 1.05251 1.67766 1.40429 0.96969 1.21683 1.18974 0.84540 0.86132 0.88027 1.44091 1.06319 1.03469 1.78448 1.20602 0.77965 0.94914 1.04009 1.22827 1.00633 0.96445 0.98581 1.23045 0.97734 0.99911 0.94959 1.20499 0.80672 0.98499 0.99361 1.45937 1.05680 1.40196 1.47196 1.20342 0.88739 0.80295 0.78889 1.90716 1.75872 1.33695 1.38699 1.23527 0.93520 1.06728 1.06571 1.85433 1.02022 1.43331 1.52611 1.22910 0.91264 1.23669 1.30503 0.90852 1.24999 0.99594 0.94532 0.94504 1.70032 1.33818 1.21061 1.25345 0.86111 0.82767 0.78397 0.78173 1.19620 1.20565 1.20569 1.67703 1.07436 1.31176 1.21668 0.89094 0.89577 0.89570 0.82713 0.74432 0.89411 0.90249 0.85831 0.85711 0.90629 0.90173 0.76694 0.89161 0.89170 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.28 10.21 36.00 0.37 0.09 16 2 C 0.23 1.44 6.82 -82.29 -0.56 0.88 16 3 C -0.24 -1.53 9.57 -38.89 -0.37 -1.90 16 4 C 0.30 2.78 6.61 -84.81 -0.56 2.22 16 5 C 0.26 2.80 15.60 -22.47 -0.35 2.45 16 6 N -0.36 -4.69 18.54 41.84 0.78 -3.92 16 7 N -0.54 -5.86 9.52 -11.90 -0.11 -5.97 16 8 C 0.58 5.51 8.42 -322.93 -2.72 2.79 16 9 N -0.69 -5.23 5.70 -63.51 -0.36 -5.59 16 10 C 0.15 1.18 5.73 -5.19 -0.03 1.15 16 11 C -0.17 -1.01 9.63 -36.02 -0.35 -1.36 16 12 C -0.14 -0.97 9.63 -36.03 -0.35 -1.32 16 13 C 0.13 1.47 5.76 -5.19 -0.03 1.44 16 14 N -0.74 -9.51 5.55 -61.47 -0.34 -9.85 16 15 C 0.53 9.93 7.85 -10.99 -0.09 9.84 16 16 O -0.52 -11.87 15.86 5.55 0.09 -11.78 16 17 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.43 13.22 55.49 0.73 -25.69 16 23 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 N -0.56 -4.65 10.38 -10.18 -0.11 -4.76 16 28 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.06 8.09 -51.93 -0.42 -0.36 16 31 H 0.16 0.51 8.06 -52.49 -0.42 0.08 16 32 H 0.42 2.38 8.58 -40.82 -0.35 2.03 16 33 H 0.09 0.88 5.30 -51.93 -0.28 0.61 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.12 0.52 8.06 -52.49 -0.42 0.09 16 36 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.99 5.29 -51.93 -0.27 0.71 16 39 H 0.40 3.91 8.46 -40.82 -0.35 3.56 16 40 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -37.67 392.06 -10.28 -47.96 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.02 Total: 0.67 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -4.62 Total: 0.35 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.59 Total: -55.79 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.67 -10.28 -47.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107049296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.973 kcal (2) G-P(sol) polarization free energy of solvation -37.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds