Wall clock time and date at job start Wed Apr 1 2020 04:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38629 * 120.36205 * 2 1 4 4 C 1.39694 * 118.41845 * 179.97438 * 3 2 1 5 5 C 1.43202 * 120.51894 * 180.02562 * 4 3 2 6 6 N 4.80313 * 136.34658 * 0.02562 * 2 1 3 7 7 N 1.33186 * 118.96722 * 0.02562 * 4 3 2 8 8 C 1.32281 * 120.62082 * 359.97438 * 7 4 3 9 9 N 1.38436 * 119.13544 * 179.97438 * 8 7 4 10 10 C 1.46498 * 119.99571 * 0.02562 * 9 8 7 11 11 C 1.50706 * 109.46941 * 179.97438 * 10 9 8 12 12 C 1.30997 * 120.00297 * 127.15309 * 11 10 9 13 13 C 1.50697 * 119.99788 * 7.55904 * 12 11 10 14 14 N 1.46507 * 109.47113 * 127.00608 * 13 12 11 15 15 C 1.34770 * 120.00270 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99682 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00404 * 179.97438 * 15 14 13 18 18 S 1.80998 * 109.47330 * 180.02562 * 17 15 14 19 19 C 1.76207 * 99.99762 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99824 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99658 * 180.02562 * 19 18 17 22 22 N 1.31635 * 120.00243 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99827 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47341 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47376 * 119.99897 * 23 21 19 26 26 H 1.48505 * 109.47001 * 240.00020 * 23 21 19 27 27 N 1.32210 * 120.36726 * 180.25591 * 2 1 3 28 28 H 1.09002 * 109.47100 * 90.00031 * 1 2 3 29 29 H 1.09004 * 109.46903 * 209.99590 * 1 2 3 30 30 H 1.08998 * 109.47386 * 329.99665 * 1 2 3 31 31 H 1.07999 * 120.78776 * 0.02562 * 3 2 1 32 32 H 0.96998 * 120.00088 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.46986 * 299.99283 * 10 9 8 34 34 H 1.08999 * 109.47452 * 59.99452 * 10 9 8 35 35 H 1.08002 * 119.99251 * 307.15245 * 11 10 9 36 36 H 1.07997 * 119.99825 * 187.55873 * 12 11 10 37 37 H 1.08998 * 109.47198 * 247.00248 * 13 12 11 38 38 H 1.08995 * 109.47477 * 7.00907 * 13 12 11 39 39 H 0.97005 * 119.99457 * 359.97438 * 14 13 12 40 40 H 1.09000 * 109.47265 * 300.00591 * 17 15 14 41 41 H 1.09003 * 109.46868 * 60.00028 * 17 15 14 42 42 H 0.96997 * 119.99721 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2077 1.1962 0.0000 4 6 3.6038 1.1488 0.0005 5 6 4.3724 2.3570 0.0011 6 7 4.9822 3.3156 0.0015 7 7 4.2089 -0.0377 0.0005 8 6 3.5010 -1.1551 0.0005 9 7 4.1618 -2.3716 -0.0001 10 6 5.6262 -2.4096 0.0000 11 6 6.0915 -3.8430 -0.0001 12 6 6.9454 -4.2545 -0.9043 13 6 7.5924 -3.2627 -1.8362 14 7 9.0479 -3.4227 -1.7858 15 6 9.8389 -2.6368 -2.5427 16 8 9.3459 -1.7968 -3.2653 17 6 11.3360 -2.8010 -2.4904 18 16 12.1131 -1.6098 -3.6099 19 6 13.8095 -2.0134 -3.3563 20 1 14.0803 -2.7996 -2.6672 21 6 14.7976 -1.3201 -4.0414 22 7 14.4675 -0.3616 -4.8810 23 14 16.5959 -1.7484 -3.7732 24 1 16.6998 -2.8543 -2.7875 25 1 17.2009 -2.1740 -5.0608 26 1 17.3169 -0.5570 -3.2574 27 7 2.1753 -1.1407 -0.0051 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6865 2.1421 0.0004 32 1 3.6551 -3.1987 0.0003 33 1 6.0028 -1.9051 -0.8899 34 1 6.0028 -1.9057 0.8901 35 1 5.7209 -4.5310 0.7454 36 1 7.1857 -5.3046 -0.9817 37 1 7.2427 -3.4383 -2.8535 38 1 7.3275 -2.2506 -1.5305 39 1 9.4421 -4.0944 -1.2075 40 1 11.6855 -2.6247 -1.4732 41 1 11.6013 -3.8133 -2.7954 42 1 15.1581 0.1231 -5.3595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107049296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:37 Heat of formation + Delta-G solvation = 50.832431 kcal Electronic energy + Delta-G solvation = -25165.192866 eV Core-core repulsion = 21271.929779 eV Total energy + Delta-G solvation = -3893.263087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.21073 -40.67400 -38.50299 -37.95121 -36.46766 -35.33198 -34.60272 -34.40571 -32.39111 -30.95978 -29.59777 -27.91372 -27.53055 -26.15122 -26.01466 -23.34166 -21.85300 -21.03757 -20.09713 -19.42519 -18.70724 -17.92510 -17.63900 -17.53560 -16.89910 -16.82192 -16.66628 -16.49258 -16.20797 -15.72129 -15.52689 -14.90449 -14.84614 -14.70448 -14.53137 -14.48201 -14.34652 -14.29061 -14.01383 -13.79879 -13.43628 -13.17826 -13.15284 -13.02911 -12.92057 -12.60248 -12.12909 -11.99621 -11.72100 -11.65949 -11.24540 -11.17171 -11.08610 -10.49474 -10.38216 -10.28235 -9.99326 -9.18032 -8.68647 -8.36026 -6.14527 -0.60988 0.07848 0.76717 1.17208 1.28451 1.40713 1.47770 1.58337 1.59004 1.73121 1.93822 2.24921 2.26167 2.44256 2.80749 2.98290 3.21458 3.31840 3.62314 3.63872 3.83135 3.93263 4.02119 4.11960 4.16970 4.29139 4.32979 4.43089 4.49801 4.65778 4.70266 4.87120 4.89853 4.92409 4.99788 5.33365 5.39746 5.40930 5.47464 5.62634 5.71110 5.89639 6.08405 6.18871 6.39703 6.49910 7.05262 7.17380 7.22932 8.73569 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.001745 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.275297 B =16040.743910 C =17485.309119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.230 3.770 3 C -0.223 4.223 4 C 0.272 3.728 5 C 0.282 3.718 6 N -0.411 5.411 7 N -0.577 5.577 8 C 0.566 3.434 9 N -0.680 5.680 10 C 0.149 3.851 11 C -0.142 4.142 12 C -0.139 4.139 13 C 0.130 3.870 14 N -0.706 5.706 15 C 0.531 3.469 16 O -0.569 6.569 17 C -0.128 4.128 18 S -0.157 6.157 19 C -0.545 4.545 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.913 5.913 23 Si 1.001 2.999 24 H -0.255 1.255 25 H -0.273 1.273 26 H -0.275 1.275 27 N -0.562 5.562 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.188 0.812 32 H 0.427 0.573 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.419 0.581 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.529 -9.219 16.120 36.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.079 3.921 3 C -0.251 4.251 4 C 0.125 3.875 5 C -0.035 4.035 6 N -0.088 5.088 7 N -0.304 5.304 8 C 0.208 3.792 9 N -0.318 5.318 10 C 0.026 3.974 11 C -0.161 4.161 12 C -0.158 4.158 13 C 0.007 3.993 14 N -0.361 5.361 15 C 0.317 3.683 16 O -0.447 6.447 17 C -0.279 4.279 18 S 0.070 5.930 19 C -0.693 4.693 20 H 0.103 0.897 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.179 1.179 25 H -0.199 1.199 26 H -0.200 1.200 27 N -0.286 5.286 28 H 0.122 0.878 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.206 0.794 32 H 0.267 0.733 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.175 0.825 36 H 0.171 0.829 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.257 0.743 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -30.655 -7.162 14.813 34.792 hybrid contribution 1.443 -0.862 0.732 1.833 sum -29.212 -8.024 15.545 34.050 Atomic orbital electron populations 1.21002 0.83897 1.05902 1.05356 1.22169 0.99096 0.85796 0.85027 1.22677 0.91795 1.02968 1.07702 1.16322 0.90012 0.85629 0.95535 1.25102 0.92478 0.92180 0.93779 1.81325 1.07470 1.12723 1.07276 1.67655 1.41700 0.97815 1.23241 1.19197 0.85127 0.86259 0.88624 1.44018 1.06044 1.03450 1.78312 1.20477 0.78398 0.96204 1.02343 1.22950 0.99426 0.95376 0.98368 1.22924 0.98388 1.00067 0.94404 1.20586 0.79283 0.99359 1.00047 1.45662 1.06331 1.38751 1.45340 1.20129 0.88504 0.80486 0.79183 1.90703 1.76464 1.36239 1.41321 1.23366 0.94117 1.05156 1.05293 1.85644 1.03827 1.47423 1.56107 1.23247 0.91321 1.23959 1.30736 0.89728 1.26165 1.05105 0.94142 0.93898 1.70202 1.35634 1.22470 1.26609 0.84876 0.75739 0.78576 0.78561 1.17854 1.19866 1.20047 1.67816 1.06805 1.32222 1.21719 0.87806 0.89326 0.87002 0.79439 0.73297 0.92043 0.91141 0.82541 0.82855 0.91854 0.91749 0.74341 0.87142 0.86846 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.20 10.21 71.23 0.73 0.53 16 2 C 0.23 2.39 6.82 42.59 0.29 2.68 16 3 C -0.22 -2.42 9.57 22.72 0.22 -2.21 16 4 C 0.27 5.11 6.61 40.54 0.27 5.38 16 5 C 0.28 6.37 15.60 88.33 1.38 7.75 16 6 N -0.41 -11.25 18.54 19.00 0.35 -10.89 16 7 N -0.58 -12.88 9.52 -191.57 -1.82 -14.71 16 8 C 0.57 10.64 8.42 261.53 2.20 12.84 16 9 N -0.68 -9.95 5.70 -354.85 -2.02 -11.98 16 10 C 0.15 2.35 5.73 85.64 0.49 2.84 16 11 C -0.14 -1.38 9.63 25.65 0.25 -1.13 16 12 C -0.14 -1.61 9.63 25.65 0.25 -1.36 16 13 C 0.13 2.83 5.76 85.63 0.49 3.32 16 14 N -0.71 -17.45 5.55 -466.79 -2.59 -20.04 16 15 C 0.53 19.95 7.85 87.66 0.69 20.64 16 16 O -0.57 -27.33 15.86 -3.04 -0.05 -27.38 16 17 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 18 S -0.16 -8.92 20.57 -56.49 -1.16 -10.08 16 19 C -0.54 -31.52 9.50 67.95 0.65 -30.87 16 20 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 21 C 0.01 0.66 5.49 84.86 0.47 1.13 16 22 N -0.91 -57.06 13.22 21.65 0.29 -56.77 16 23 Si 1.00 44.15 29.55 68.60 2.03 46.17 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 27 N -0.56 -8.71 10.38 -186.13 -1.93 -10.64 16 28 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.11 -0.32 8.09 -2.39 -0.02 -0.34 16 31 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 32 H 0.43 4.24 8.58 -92.71 -0.80 3.44 16 33 H 0.06 1.31 5.30 -2.39 -0.01 1.30 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.16 0.63 8.06 -2.91 -0.02 0.60 16 36 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.66 5.29 -2.39 -0.01 1.65 16 39 H 0.42 7.05 8.46 -92.70 -0.78 6.27 16 40 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 41 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 42 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -87.86 392.06 1.40 -86.46 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -0.48 Total: 13.02 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 8.80 Total: 16.85 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -7.73 Total: -125.03 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.16 Total: -10.08 kcal Total: -87.86 1.40 -86.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107049296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.292 kcal (2) G-P(sol) polarization free energy of solvation -87.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds