Wall clock time and date at job start Wed Apr 1 2020 04:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38625 * 120.36380 * 2 1 4 4 C 1.39702 * 118.41560 * 179.72263 * 3 2 1 5 5 C 1.43195 * 120.51258 * 179.97438 * 4 3 2 6 6 N 4.80302 * 136.35009 * 0.09720 * 2 1 3 7 7 N 1.33178 * 118.96409 * 0.02562 * 4 3 2 8 8 C 1.32278 * 120.62633 * 359.97438 * 7 4 3 9 9 N 1.38428 * 119.13706 * 179.97438 * 8 7 4 10 10 C 1.46508 * 119.99837 * 354.56308 * 9 8 7 11 11 C 1.52995 * 115.55329 * 294.47519 * 10 9 8 12 12 N 1.46499 * 109.47169 * 324.50343 * 11 10 9 13 13 C 1.34778 * 119.99983 * 174.31982 * 12 11 10 14 14 O 1.21279 * 120.00114 * 4.98313 * 13 12 11 15 15 C 1.50703 * 119.99612 * 184.98275 * 13 12 11 16 16 S 1.81000 * 109.46943 * 185.69754 * 15 13 12 17 17 C 1.76201 * 100.00303 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99520 * 359.97438 * 17 16 15 19 19 C 1.38793 * 120.00176 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99883 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00105 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46934 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47175 * 120.00175 * 21 19 17 24 24 H 1.48500 * 109.47407 * 240.00365 * 21 19 17 25 25 C 1.53004 * 117.49630 * 148.80192 * 10 9 8 26 26 C 1.53007 * 117.49370 * 80.14754 * 10 9 8 27 27 N 1.32199 * 120.36400 * 179.72414 * 2 1 3 28 28 H 1.08999 * 109.47073 * 89.99383 * 1 2 3 29 29 H 1.08999 * 109.47096 * 209.99807 * 1 2 3 30 30 H 1.09005 * 109.46510 * 330.00047 * 1 2 3 31 31 H 1.07998 * 120.79052 * 359.75539 * 3 2 1 32 32 H 0.96999 * 120.00373 * 174.56764 * 9 8 7 33 33 H 1.09004 * 109.47007 * 84.49711 * 11 10 9 34 34 H 1.08996 * 109.47028 * 204.49838 * 11 10 9 35 35 H 0.97002 * 120.00065 * 354.31989 * 12 11 10 36 36 H 1.08997 * 109.47245 * 305.69469 * 15 13 12 37 37 H 1.09001 * 109.47041 * 65.69842 * 15 13 12 38 38 H 0.97006 * 120.00134 * 179.97438 * 20 19 17 39 39 H 1.09001 * 117.49858 * 0.02562 * 25 10 9 40 40 H 1.08996 * 117.49395 * 145.02296 * 25 10 9 41 41 H 1.09007 * 117.49154 * 214.97783 * 26 10 9 42 42 H 1.08994 * 117.50102 * 359.97293 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2078 1.1961 0.0000 4 6 3.6040 1.1486 0.0059 5 6 4.3725 2.3568 0.0057 6 7 4.9824 3.3153 0.0056 7 7 4.2089 -0.0378 0.0109 8 6 3.5010 -1.1552 0.0106 9 7 4.1616 -2.3717 0.0153 10 6 5.6216 -2.4128 -0.0999 11 6 6.1927 -1.9196 -1.4308 12 7 5.2895 -2.2984 -2.5202 13 6 5.5301 -1.8696 -3.7750 14 8 6.5415 -1.2465 -4.0195 15 6 4.5424 -2.1643 -4.8744 16 16 5.2207 -1.6116 -6.4589 17 6 3.8989 -2.0648 -7.5324 18 1 3.0145 -2.5365 -7.1304 19 6 3.9945 -1.8156 -8.8944 20 7 5.0727 -1.2411 -9.3843 21 14 2.5935 -2.2967 -10.0325 22 1 1.5045 -2.9221 -9.2400 23 1 2.0741 -1.0858 -10.7174 24 1 3.0880 -3.2641 -11.0448 25 6 6.3535 -3.5587 0.6018 26 6 6.4379 -2.1377 1.1647 27 7 2.1753 -1.1406 0.0055 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8901 0.5139 31 1 1.6868 2.1421 -0.0040 32 1 3.6579 -3.1969 0.0947 33 1 6.2935 -0.8346 -1.4031 34 1 7.1708 -2.3713 -1.5960 35 1 4.5181 -2.8578 -2.3384 36 1 4.3530 -3.2370 -4.9147 37 1 3.6091 -1.6377 -4.6752 38 1 5.1397 -1.0673 -10.3363 39 1 5.7488 -4.2821 1.1487 40 1 7.2421 -3.9608 0.1153 41 1 7.3821 -1.6055 1.0482 42 1 5.8888 -1.9256 2.0820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110076935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:30 Heat of formation + Delta-G solvation = 84.975857 kcal Electronic energy + Delta-G solvation = -26983.591285 eV Core-core repulsion = 23091.808768 eV Total energy + Delta-G solvation = -3891.782517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54029 -39.56783 -38.35982 -37.06491 -34.96617 -34.31604 -33.92999 -32.42550 -31.12904 -29.73926 -29.01727 -26.39992 -25.43239 -25.38689 -23.66059 -22.83425 -20.47299 -20.29000 -19.81936 -18.06113 -17.70924 -17.02599 -16.53369 -16.32341 -15.88960 -15.85455 -15.33104 -14.99342 -14.80319 -14.69222 -14.03626 -13.97500 -13.87491 -13.51299 -13.43805 -13.32985 -13.20847 -13.14046 -12.73281 -12.62719 -12.53265 -11.94296 -11.79403 -11.61434 -11.41030 -11.07100 -11.01570 -10.83521 -10.76318 -10.61256 -10.35061 -9.80282 -9.66140 -9.38491 -9.07395 -8.82837 -8.57141 -8.22481 -6.49313 -6.21335 -3.91762 0.17942 0.74473 1.98680 2.37909 2.61045 3.00265 3.05238 3.11860 3.21513 3.25639 3.30100 3.36654 3.58797 3.74155 3.83916 4.16626 4.20639 4.32556 4.42936 4.48562 4.61203 4.76082 4.86646 5.13862 5.14169 5.17211 5.24494 5.24980 5.28656 5.44871 5.53230 5.54571 5.65114 5.72012 5.80360 5.86111 5.90594 6.13868 6.36476 6.53902 6.67159 6.98257 7.00599 7.60093 7.72900 7.86895 8.35765 8.63473 9.24001 10.86163 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009758 B = 0.002911 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.807473 B = 9617.482093 C =10590.443122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.230 3.770 3 C -0.240 4.240 4 C 0.294 3.706 5 C 0.264 3.736 6 N -0.368 5.368 7 N -0.529 5.529 8 C 0.586 3.414 9 N -0.664 5.664 10 C 0.102 3.898 11 C 0.155 3.845 12 N -0.733 5.733 13 C 0.532 3.468 14 O -0.516 6.516 15 C -0.151 4.151 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.165 4.165 26 C -0.158 4.158 27 N -0.553 5.553 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.155 0.845 32 H 0.420 0.580 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.396 0.604 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.268 0.732 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.761 -2.769 26.450 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.081 3.919 3 C -0.268 4.268 4 C 0.144 3.856 5 C -0.055 4.055 6 N -0.044 5.044 7 N -0.253 5.253 8 C 0.229 3.771 9 N -0.301 5.301 10 C 0.014 3.986 11 C 0.029 3.971 12 N -0.388 5.388 13 C 0.318 3.682 14 O -0.391 6.391 15 C -0.302 4.302 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.202 4.202 26 C -0.197 4.197 27 N -0.276 5.276 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.173 0.827 32 H 0.259 0.741 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.230 0.770 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.311 -1.163 25.854 26.237 hybrid contribution -3.272 -1.126 -0.360 3.479 sum -7.583 -2.289 25.494 26.696 Atomic orbital electron populations 1.20852 0.86956 1.04345 1.04402 1.21412 0.97358 0.86453 0.86700 1.22334 0.93352 1.01377 1.09772 1.16195 0.88857 0.86700 0.93806 1.24791 0.93302 0.92300 0.95063 1.81280 1.06508 1.11073 1.05573 1.67755 1.40228 0.96762 1.20575 1.18881 0.84381 0.86010 0.87817 1.43308 1.04662 1.03753 1.78396 1.20757 0.78492 1.05313 0.94055 1.20998 0.92627 1.01320 0.82145 1.45835 1.30415 1.55132 1.07391 1.20284 0.86943 0.78448 0.82566 1.90706 1.27220 1.39104 1.82029 1.23505 1.01210 1.04834 1.00611 1.85405 1.26020 1.79546 0.92325 1.22904 1.04646 1.46415 0.94351 0.90923 1.24989 0.96625 0.94705 0.97249 1.70031 1.26732 1.39727 1.13772 0.86120 0.81053 0.78326 0.80020 1.19614 1.20558 1.20544 1.23506 1.02213 0.91973 1.02544 1.23330 1.01919 0.97853 0.96577 1.67672 1.07389 1.31220 1.21305 0.88916 0.89602 0.89640 0.82749 0.74059 0.89985 0.90663 0.77012 0.89511 0.89437 0.92239 0.87997 0.87053 0.87549 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.21 36.01 0.37 -0.13 16 2 C 0.23 1.85 6.82 -82.29 -0.56 1.29 16 3 C -0.24 -1.93 9.57 -38.89 -0.37 -2.30 16 4 C 0.29 3.13 6.61 -84.81 -0.56 2.57 16 5 C 0.26 3.13 15.60 -22.48 -0.35 2.78 16 6 N -0.37 -5.01 18.54 41.84 0.78 -4.24 16 7 N -0.53 -6.10 8.92 -11.91 -0.11 -6.21 16 8 C 0.59 6.07 8.29 -322.95 -2.68 3.40 16 9 N -0.66 -5.47 4.59 -49.59 -0.23 -5.70 16 10 C 0.10 0.87 1.94 -131.81 -0.26 0.61 16 11 C 0.15 1.89 5.44 -4.04 -0.02 1.86 16 12 N -0.73 -10.25 5.39 -60.30 -0.33 -10.57 16 13 C 0.53 10.29 7.83 -10.98 -0.09 10.20 16 14 O -0.52 -12.10 15.89 5.56 0.09 -12.01 16 15 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 16 S -0.06 -1.64 20.58 -107.50 -2.21 -3.86 16 17 C -0.53 -15.40 9.50 30.94 0.29 -15.10 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 21 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 C -0.16 -0.99 10.11 -26.69 -0.27 -1.26 16 26 C -0.16 -1.14 10.18 -26.69 -0.27 -1.41 16 27 N -0.55 -5.35 10.38 -10.19 -0.11 -5.46 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16 31 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.42 2.66 8.94 -40.82 -0.37 2.30 16 33 H 0.08 1.21 7.79 -51.93 -0.40 0.80 16 34 H 0.08 0.91 7.91 -51.93 -0.41 0.50 16 35 H 0.40 4.64 7.79 -40.82 -0.32 4.32 16 36 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 37 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 38 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.11 0.64 8.06 -51.93 -0.42 0.22 16 41 H 0.11 0.77 8.14 -51.92 -0.42 0.34 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -36.84 391.87 -10.40 -47.24 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.26 Total: 2.46 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -4.64 Total: 1.59 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.74 Total: -57.81 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.84 -10.40 -47.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110076935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.218 kcal (2) G-P(sol) polarization free energy of solvation -36.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds