Wall clock time and date at job start Wed Apr 1 2020 04:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 110.36789 * 2 1 4 4 C 1.34774 * 119.99930 * 299.27315 * 3 2 1 5 5 O 1.21284 * 120.00119 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00002 * 179.97438 * 4 3 2 7 7 S 1.80999 * 109.47000 * 179.97438 * 6 4 3 8 8 C 1.76203 * 100.00035 * 180.02562 * 7 6 4 9 9 H 1.08001 * 119.99679 * 0.02562 * 8 7 6 10 10 C 1.38796 * 120.00418 * 180.02562 * 8 7 6 11 11 N 1.31629 * 119.99627 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00124 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47175 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47009 * 119.99883 * 12 10 8 15 15 H 1.48509 * 109.46739 * 239.99622 * 12 10 8 16 16 C 1.54264 * 110.32351 * 237.82264 * 2 1 3 17 17 C 1.54379 * 105.05639 * 241.09923 * 16 2 1 18 18 N 1.48562 * 104.59941 * 336.14898 * 17 16 2 19 19 C 1.38559 * 111.00206 * 159.03498 * 18 17 16 20 20 C 1.39814 * 120.48728 * 59.87713 * 19 18 17 21 21 C 1.38260 * 118.48155 * 179.97438 * 20 19 18 22 22 N 1.32352 * 119.28997 * 0.02562 * 21 20 19 23 23 C 1.32555 * 120.94030 * 359.97438 * 22 21 20 24 24 C 1.43205 * 119.17260 * 179.97438 * 23 22 21 25 25 N 6.98902 * 92.72942 * 126.76997 * 2 1 3 26 26 N 1.32616 * 121.65613 * 0.28041 * 23 22 21 27 27 C 1.48558 * 104.21834 * 39.47948 * 18 17 16 28 28 H 1.09004 * 109.46577 * 180.72527 * 1 2 3 29 29 H 1.08998 * 109.46688 * 300.72516 * 1 2 3 30 30 H 1.09001 * 109.46737 * 60.72661 * 1 2 3 31 31 H 0.96994 * 120.00155 * 119.27323 * 3 2 1 32 32 H 1.08991 * 109.46982 * 300.00147 * 6 4 3 33 33 H 1.08998 * 109.47087 * 60.00396 * 6 4 3 34 34 H 0.97002 * 119.99813 * 180.02562 * 11 10 8 35 35 H 1.09000 * 110.32552 * 122.21041 * 16 2 1 36 36 H 1.08999 * 110.32438 * 359.97438 * 16 2 1 37 37 H 1.09002 * 110.41369 * 217.36603 * 17 16 2 38 38 H 1.09003 * 110.40985 * 94.92683 * 17 16 2 39 39 H 1.08005 * 120.76506 * 359.95009 * 20 19 18 40 40 H 1.08007 * 120.35816 * 180.02562 * 21 20 19 41 41 H 1.09006 * 110.41145 * 79.30269 * 27 18 17 42 42 H 1.09006 * 110.41011 * 201.73991 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0400 1.3735 0.0000 4 6 1.7395 2.2038 -1.0181 5 8 1.0473 1.8139 -1.9346 6 6 2.2635 3.6168 -1.0179 7 16 1.6919 4.4725 -2.5069 8 6 2.4297 6.0526 -2.2540 9 1 3.0250 6.2355 -1.3717 10 6 2.2457 7.0621 -3.1886 11 7 1.5204 6.8389 -4.2642 12 14 3.0284 8.7369 -2.9207 13 1 3.7883 8.7298 -1.6450 14 1 3.9506 9.0378 -4.0451 15 1 1.9679 9.7747 -2.8590 16 6 2.0658 -0.7704 -1.2244 17 6 2.8808 -1.9420 -0.6359 18 7 3.2695 -1.4828 0.7225 19 6 3.5877 -2.5570 1.5377 20 6 4.6288 -3.4245 1.1938 21 6 4.9113 -4.4827 2.0376 22 7 4.1933 -4.6430 3.1378 23 6 3.2116 -3.8048 3.4392 24 6 2.4585 -4.0143 4.6391 25 7 1.8629 -4.1789 5.5922 26 7 2.9054 -2.7806 2.6544 27 6 2.0663 -0.7710 1.2252 28 1 -0.3632 -1.0276 0.0130 29 1 -0.3632 0.5251 0.8834 30 1 -0.3633 0.5025 -0.8965 31 1 2.5938 1.6852 0.7327 32 1 1.8973 4.1399 -0.1346 33 1 3.3533 3.6001 -1.0046 34 1 1.3921 7.5443 -4.9175 35 1 2.7083 -0.1267 -1.8253 36 1 1.2388 -1.1489 -1.8251 37 1 3.7672 -2.1307 -1.2415 38 1 2.2649 -2.8392 -0.5721 39 1 5.1992 -3.2719 0.2894 40 1 5.7093 -5.1712 1.8016 41 1 1.3230 -1.4849 1.5803 42 1 2.3395 -0.0778 2.0209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110722557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:00 Heat of formation + Delta-G solvation = 74.270440 kcal Electronic energy + Delta-G solvation = -26724.172613 eV Core-core repulsion = 22831.925874 eV Total energy + Delta-G solvation = -3892.246739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.06769 -40.39090 -38.55672 -37.10040 -35.41026 -33.92048 -32.71182 -32.44687 -31.17215 -29.96493 -28.55046 -26.95969 -26.06475 -25.50065 -24.16718 -22.47596 -21.25748 -20.21384 -19.35580 -18.34087 -17.85812 -17.27532 -16.73053 -16.30663 -16.05053 -15.92141 -15.22727 -14.93408 -14.82261 -14.64726 -14.39475 -13.97317 -13.84181 -13.51007 -13.44470 -13.27531 -13.23206 -13.13548 -12.71521 -12.57225 -12.37016 -12.09418 -11.84840 -11.63292 -11.44583 -11.26342 -11.09223 -11.06297 -11.00749 -10.76996 -10.55879 -10.06342 -9.82163 -9.31738 -9.23852 -9.09638 -8.93565 -8.25646 -6.51763 -6.24017 -3.94160 -0.21333 0.37526 1.84157 2.13869 2.42728 2.93328 2.98868 3.05404 3.20066 3.26502 3.28263 3.30966 3.63484 3.70727 3.91833 4.08347 4.18634 4.27014 4.32819 4.58699 4.65811 4.69205 4.79654 5.00989 5.03626 5.11573 5.16539 5.27212 5.32664 5.40245 5.50004 5.53837 5.67224 5.75974 5.85298 5.87672 5.99798 6.13280 6.22662 6.30214 6.32759 6.66566 6.75497 7.22953 7.58228 7.69280 8.33571 8.58927 9.21889 10.83418 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.001934 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.629376 B =14471.682653 C =14511.810224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.174 3.826 3 N -0.726 5.726 4 C 0.536 3.464 5 O -0.513 6.513 6 C -0.154 4.154 7 S -0.059 6.059 8 C -0.535 4.535 9 H 0.073 0.927 10 C 0.073 3.927 11 N -0.868 5.868 12 Si 0.918 3.082 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C -0.124 4.124 17 C 0.042 3.958 18 N -0.448 5.448 19 C 0.358 3.642 20 C -0.211 4.211 21 C 0.169 3.831 22 N -0.504 5.504 23 C 0.423 3.577 24 C 0.285 3.715 25 N -0.358 5.358 26 N -0.521 5.521 27 C 0.042 3.958 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.399 0.601 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.161 0.839 40 H 0.184 0.816 41 H 0.088 0.912 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 -23.422 10.996 26.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.087 3.913 3 N -0.381 5.381 4 C 0.322 3.678 5 O -0.387 6.387 6 C -0.305 4.305 7 S 0.167 5.833 8 C -0.683 4.683 9 H 0.091 0.909 10 C -0.136 4.136 11 N -0.503 5.503 12 Si 0.745 3.255 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.206 1.206 16 C -0.163 4.163 17 C -0.083 4.083 18 N -0.165 5.165 19 C 0.117 3.883 20 C -0.236 4.236 21 C 0.006 3.994 22 N -0.222 5.222 23 C 0.152 3.848 24 C -0.035 4.035 25 N -0.036 5.036 26 N -0.243 5.243 27 C -0.085 4.085 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.234 0.766 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.178 0.822 40 H 0.201 0.799 41 H 0.106 0.894 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.236 -24.002 11.469 26.936 hybrid contribution 1.900 1.596 0.571 2.546 sum 6.135 -22.406 12.040 26.165 Atomic orbital electron populations 1.22219 0.92985 1.02224 1.04403 1.20922 0.94416 0.82306 0.93677 1.46158 1.55029 1.11378 1.25568 1.20249 0.79616 0.86671 0.81244 1.90670 1.36605 1.76552 1.34907 1.23542 1.04258 0.95085 1.07606 1.85347 1.67974 1.09041 1.20913 1.22909 1.37259 0.97490 1.10631 0.90907 1.24990 0.95119 0.99027 0.94478 1.70024 1.36920 1.33629 1.09725 0.86124 0.78931 0.82165 0.78324 1.19620 1.20567 1.20575 1.22787 1.00249 0.95726 0.97534 1.23387 1.00497 0.98148 0.86257 1.62306 1.34559 1.16440 1.03224 1.20261 0.90288 0.88036 0.89743 1.22720 0.99801 0.96871 1.04236 1.23151 0.95144 0.94349 0.86744 1.68271 1.06252 1.28225 1.19449 1.16969 0.90240 0.88251 0.89294 1.23949 0.93508 0.94332 0.91733 1.81282 1.07041 1.06014 1.09231 1.68181 1.29066 1.20332 1.06714 1.23450 0.90196 0.97876 0.96985 0.92022 0.92178 0.89387 0.76613 0.89324 0.89289 0.92248 0.89148 0.89253 0.88357 0.92044 0.82158 0.79867 0.89392 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.17 37.16 0.30 -1.42 16 2 C 0.17 1.77 1.01 -130.43 -0.13 1.64 16 3 N -0.73 -8.70 5.10 -46.32 -0.24 -8.93 16 4 C 0.54 9.01 7.01 -10.98 -0.08 8.94 16 5 O -0.51 -10.25 13.16 5.55 0.07 -10.18 16 6 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 7 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 8 C -0.53 -14.94 9.50 30.94 0.29 -14.65 16 9 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 10 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 11 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 12 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 C -0.12 -1.20 5.49 -25.35 -0.14 -1.34 16 17 C 0.04 0.28 5.94 -2.18 -0.01 0.27 16 18 N -0.45 -3.45 5.41 -168.60 -0.91 -4.36 16 19 C 0.36 2.64 6.23 -154.89 -0.97 1.68 16 20 C -0.21 -1.00 9.51 -38.98 -0.37 -1.37 16 21 C 0.17 0.75 11.28 -17.32 -0.20 0.56 16 22 N -0.50 -3.81 10.32 -12.69 -0.13 -3.94 16 23 C 0.42 3.70 7.40 -159.18 -1.18 2.52 16 24 C 0.28 2.80 15.74 -22.47 -0.35 2.45 16 25 N -0.36 -4.05 18.54 41.83 0.78 -3.27 16 26 N -0.52 -4.56 8.53 -11.84 -0.10 -4.66 16 27 C 0.04 0.35 5.08 -2.19 -0.01 0.34 16 28 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.22 6.32 -51.93 -0.33 0.90 16 31 H 0.40 3.94 8.26 -40.82 -0.34 3.61 16 32 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 33 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 34 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.09 1.09 7.31 -51.93 -0.38 0.71 16 36 H 0.09 0.87 7.71 -51.93 -0.40 0.47 16 37 H 0.10 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.06 0.36 7.97 -51.93 -0.41 -0.06 16 39 H 0.16 0.39 7.99 -52.48 -0.42 -0.03 16 40 H 0.18 0.13 8.06 -52.48 -0.42 -0.30 16 41 H 0.09 0.74 6.97 -51.93 -0.36 0.38 16 42 H 0.10 0.81 7.75 -51.93 -0.40 0.41 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -34.48 374.83 -9.22 -43.69 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.12 Total: -0.18 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.71 Total: -1.16 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.13 Total: -50.18 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.07 Total: -10.18 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.48 -9.22 -43.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110722557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.964 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds