Wall clock time and date at job start Wed Apr 1 2020 04:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 110.28496 * 2 1 4 4 C 1.34781 * 119.99634 * 57.87447 * 3 2 1 5 5 O 1.21274 * 120.00344 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99423 * 179.97438 * 4 3 2 7 7 S 1.81001 * 109.46896 * 180.02562 * 6 4 3 8 8 C 1.76201 * 99.99894 * 180.02562 * 7 6 4 9 9 H 1.07991 * 120.00323 * 359.97438 * 8 7 6 10 10 C 1.38805 * 119.99766 * 179.97438 * 8 7 6 11 11 N 1.31633 * 120.00034 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99929 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46807 * 179.97438 * 12 10 8 14 14 H 1.48497 * 109.46906 * 300.00462 * 12 10 8 15 15 H 1.48498 * 109.47018 * 60.00200 * 12 10 8 16 16 C 1.54256 * 110.40924 * 122.18573 * 2 1 3 17 17 C 1.54384 * 105.06097 * 118.94438 * 16 2 1 18 18 N 1.48565 * 104.59241 * 23.84791 * 17 16 2 19 19 C 1.38971 * 110.99833 * 200.95946 * 18 17 16 20 20 C 1.39617 * 120.03136 * 295.14932 * 19 18 17 21 21 N 1.31933 * 120.12448 * 179.77755 * 20 19 18 22 22 C 1.32164 * 120.18791 * 0.47359 * 21 20 19 23 23 C 1.39377 * 120.04919 * 359.77876 * 22 21 20 24 24 C 1.43197 * 120.06433 * 180.02562 * 23 22 21 25 25 N 6.99978 * 91.61747 * 231.20579 * 2 1 3 26 26 N 1.32386 * 120.02160 * 115.41830 * 19 18 17 27 27 C 1.48563 * 104.22235 * 320.51979 * 18 17 16 28 28 H 1.08996 * 109.47369 * 60.69880 * 1 2 3 29 29 H 1.09005 * 109.46712 * 180.70301 * 1 2 3 30 30 H 1.09003 * 109.47081 * 300.69692 * 1 2 3 31 31 H 0.96994 * 119.99836 * 237.87568 * 3 2 1 32 32 H 1.09001 * 109.47454 * 60.00304 * 6 4 3 33 33 H 1.09003 * 109.47322 * 299.99933 * 6 4 3 34 34 H 0.97001 * 119.99662 * 179.97438 * 11 10 8 35 35 H 1.09000 * 110.32314 * 237.83528 * 16 2 1 36 36 H 1.08992 * 110.32892 * 0.04554 * 16 2 1 37 37 H 1.09005 * 110.40763 * 265.07571 * 17 16 2 38 38 H 1.08996 * 110.41248 * 142.63035 * 17 16 2 39 39 H 1.08003 * 119.93345 * 0.02562 * 20 19 18 40 40 H 1.07996 * 119.97873 * 179.75315 * 22 21 20 41 41 H 1.09005 * 110.41030 * 280.70331 * 27 18 17 42 42 H 1.08999 * 110.50737 * 158.31381 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0379 1.3742 0.0000 4 6 1.6893 2.2214 0.9886 5 8 0.9549 1.8464 1.8778 6 6 2.2123 3.6348 0.9888 7 16 1.5707 4.5151 2.4343 8 6 2.3178 6.0919 2.1887 9 1 2.9536 6.2607 1.3322 10 6 2.0891 7.1171 3.0960 11 7 1.3145 6.9112 4.1403 12 14 2.8816 8.7886 2.8360 13 1 2.4818 9.7024 3.9361 14 1 4.3591 8.6398 2.8275 15 1 2.4334 9.3523 1.5374 16 6 2.0680 -0.7701 1.2236 17 6 2.8841 -1.9405 0.6339 18 7 3.2708 -1.4800 -0.7246 19 6 3.5910 -2.5567 -1.5429 20 6 4.6982 -3.3541 -1.2473 21 7 5.0013 -4.3793 -2.0204 22 6 4.2642 -4.6508 -3.0833 23 6 3.1602 -3.8567 -3.3885 24 6 2.3610 -4.1509 -4.5397 25 7 1.7276 -4.3838 -5.4535 26 7 2.8493 -2.8238 -2.6065 27 6 2.0662 -0.7698 -1.2260 28 1 -0.3634 0.5029 -0.8961 29 1 -0.3633 -1.0277 0.0126 30 1 -0.3633 0.5246 0.8837 31 1 2.6251 1.6742 -0.7114 32 1 1.8880 4.1424 0.0804 33 1 3.3015 3.6192 1.0272 34 1 1.1550 7.6276 4.7745 35 1 2.7100 -0.1257 1.8241 36 1 1.2421 -1.1497 1.8251 37 1 2.2694 -2.8384 0.5703 38 1 3.7712 -2.1280 1.2387 39 1 5.3055 -3.1336 -0.3818 40 1 4.5176 -5.4885 -3.7161 41 1 1.3236 -1.4846 -1.5807 42 1 2.3357 -0.0761 -2.0224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110723236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:23 Heat of formation + Delta-G solvation = 45.870555 kcal Electronic energy + Delta-G solvation = -26715.550917 eV Core-core repulsion = 22822.072666 eV Total energy + Delta-G solvation = -3893.478250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.64617 -41.28805 -39.50798 -37.90647 -36.23097 -35.17760 -34.56369 -33.43546 -31.73685 -30.45429 -29.88369 -27.76640 -27.62795 -26.47096 -24.82736 -23.01143 -22.30854 -20.87044 -20.17511 -19.80168 -18.93567 -18.03569 -17.73644 -17.67838 -17.22595 -16.85944 -16.51335 -16.29995 -16.08423 -15.47007 -14.96105 -14.72830 -14.66790 -14.48856 -14.38947 -14.27315 -14.18017 -14.11683 -13.90058 -13.44648 -13.31276 -13.14274 -13.05074 -12.91811 -12.85606 -12.66115 -12.51478 -12.35807 -12.04492 -11.90082 -11.71592 -11.11293 -11.06329 -10.65828 -10.45132 -10.24461 -10.06804 -9.53214 -8.62394 -8.32924 -6.09563 -0.80689 -0.16351 1.21200 1.29293 1.44342 1.48250 1.58354 1.62826 1.70352 2.13089 2.27009 2.32748 2.39334 2.64273 3.01016 3.13666 3.23197 3.30936 3.37144 3.43013 3.72079 3.93152 3.99448 4.04286 4.11219 4.28466 4.31406 4.36266 4.52413 4.56960 4.61863 4.70073 4.74331 4.76603 4.94525 4.96663 5.17652 5.19613 5.36588 5.43487 5.64958 5.69508 5.98192 6.20199 6.21287 6.50371 6.59454 7.08655 7.33855 8.75706 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.022381 B = 0.001929 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.775313 B =14512.755412 C =14573.807937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.171 3.829 3 N -0.704 5.704 4 C 0.540 3.460 5 O -0.550 6.550 6 C -0.132 4.132 7 S -0.144 6.144 8 C -0.548 4.548 9 H 0.080 0.920 10 C 0.014 3.986 11 N -0.910 5.910 12 Si 0.995 3.005 13 H -0.279 1.279 14 H -0.262 1.262 15 H -0.264 1.264 16 C -0.124 4.124 17 C 0.047 3.953 18 N -0.447 5.447 19 C 0.258 3.742 20 C 0.098 3.902 21 N -0.425 5.425 22 C 0.092 3.908 23 C 0.157 3.843 24 C 0.289 3.711 25 N -0.415 5.415 26 N -0.463 5.463 27 C 0.051 3.949 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.413 0.587 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.271 0.729 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.119 0.881 39 H 0.206 0.794 40 H 0.210 0.790 41 H 0.089 0.911 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.502 -24.826 -14.023 29.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.085 3.915 3 N -0.358 5.358 4 C 0.325 3.675 5 O -0.427 6.427 6 C -0.283 4.283 7 S 0.084 5.916 8 C -0.696 4.696 9 H 0.099 0.901 10 C -0.191 4.191 11 N -0.547 5.547 12 Si 0.817 3.183 13 H -0.204 1.204 14 H -0.187 1.187 15 H -0.188 1.188 16 C -0.163 4.163 17 C -0.077 4.077 18 N -0.166 5.166 19 C 0.020 3.980 20 C -0.069 4.069 21 N -0.138 5.138 22 C -0.068 4.068 23 C 0.016 3.984 24 C -0.029 4.029 25 N -0.092 5.092 26 N -0.184 5.184 27 C -0.076 4.076 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.250 0.750 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.138 0.862 39 H 0.223 0.777 40 H 0.226 0.774 41 H 0.107 0.893 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.697 -25.414 -13.791 29.680 hybrid contribution 0.689 1.683 -0.942 2.048 sum 7.385 -23.730 -14.734 28.892 Atomic orbital electron populations 1.22178 0.93626 1.03083 1.02775 1.21076 0.94035 0.81117 0.95302 1.45921 1.51488 1.11165 1.27226 1.19860 0.79835 0.86242 0.81523 1.90660 1.36874 1.77729 1.37420 1.23396 1.05029 0.95850 1.04056 1.85474 1.66048 1.09648 1.30473 1.23179 1.34997 0.97614 1.13769 0.90141 1.26091 0.95538 1.03480 0.93988 1.70169 1.36709 1.34824 1.12948 0.85047 0.78810 0.76195 0.78228 1.20427 1.18660 1.18831 1.22701 1.00022 0.96573 0.97042 1.23390 1.01118 0.96874 0.86363 1.62720 1.34040 1.16689 1.03108 1.21107 0.93432 0.91378 0.92046 1.24095 0.93655 0.89241 0.99866 1.68705 1.26733 1.15170 1.03186 1.24052 0.89222 0.99072 0.94454 1.17141 0.94891 0.94870 0.91493 1.24827 0.92697 0.93282 0.92122 1.81332 1.08294 1.08279 1.11307 1.68150 1.28492 1.16113 1.05659 1.23264 0.90958 0.97657 0.95726 0.92144 0.90066 0.92546 0.75015 0.87830 0.87592 0.92037 0.91566 0.89921 0.91016 0.86248 0.77715 0.77366 0.89296 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 8.14 71.98 0.59 -2.87 16 2 C 0.17 3.33 1.01 4.50 0.00 3.33 16 3 N -0.70 -16.20 5.08 -418.88 -2.13 -18.33 16 4 C 0.54 18.28 7.05 87.66 0.62 18.90 16 5 O -0.55 -22.84 13.16 -3.01 -0.04 -22.88 16 6 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 7 S -0.14 -7.76 20.57 -56.49 -1.16 -8.93 16 8 C -0.55 -30.92 9.50 67.96 0.65 -30.27 16 9 H 0.08 4.23 7.80 -2.92 -0.02 4.20 16 10 C 0.01 0.78 5.49 84.86 0.47 1.25 16 11 N -0.91 -55.36 13.22 21.65 0.29 -55.07 16 12 Si 1.00 43.26 29.55 68.60 2.03 45.28 16 13 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 14 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 15 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 16 C -0.12 -2.31 5.58 31.49 0.18 -2.14 16 17 C 0.05 0.52 6.06 86.45 0.52 1.05 16 18 N -0.45 -5.57 5.40 -687.42 -3.71 -9.29 16 19 C 0.26 2.99 6.15 133.20 0.82 3.81 16 20 C 0.10 0.82 10.68 85.01 0.91 1.72 16 21 N -0.43 -3.93 10.48 -193.54 -2.03 -5.96 16 22 C 0.09 0.68 10.91 84.92 0.93 1.60 16 23 C 0.16 1.79 6.58 40.45 0.27 2.06 16 24 C 0.29 4.21 15.56 88.33 1.37 5.58 16 25 N -0.42 -8.04 18.54 19.00 0.35 -7.69 16 26 N -0.46 -6.39 8.52 -186.03 -1.59 -7.98 16 27 C 0.05 0.75 5.12 86.45 0.44 1.19 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.06 1.67 6.07 -2.39 -0.01 1.66 16 31 H 0.41 7.34 8.28 -92.71 -0.77 6.58 16 32 H 0.10 3.62 8.14 -2.39 -0.02 3.61 16 33 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 34 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 35 H 0.07 1.57 7.50 -2.39 -0.02 1.55 16 36 H 0.08 1.62 7.71 -2.39 -0.02 1.60 16 37 H 0.07 0.65 7.97 -2.38 -0.02 0.64 16 38 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.21 0.68 8.06 -2.91 -0.02 0.66 16 40 H 0.21 0.18 8.06 -2.91 -0.02 0.16 16 41 H 0.09 1.32 6.88 -2.38 -0.02 1.31 16 42 H 0.10 1.41 7.77 -2.39 -0.02 1.39 16 Total: -1.00 -77.11 374.97 0.52 -76.59 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.31 Total: 13.61 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 8.20 Total: 0.63 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -8.82 Total: -104.31 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.04 Total: -22.88 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -7.76 SS G_CDS: -1.16 Total: -8.93 kcal Total: -77.11 0.52 -76.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110723236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.461 kcal (2) G-P(sol) polarization free energy of solvation -77.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds