Wall clock time and date at job start Wed Apr 1 2020 04:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39553 * 120.02123 * 33.63864 * 3 2 1 5 5 N 1.32012 * 119.96529 * 179.70198 * 4 3 2 6 6 C 1.32788 * 120.00342 * 0.55251 * 5 4 3 7 7 N 1.38573 * 119.97809 * 179.72556 * 6 5 4 8 8 C 1.46496 * 119.99777 * 179.72916 * 7 6 5 9 9 C 1.53000 * 109.47203 * 179.97438 * 8 7 6 10 10 H 1.09007 * 112.84914 * 43.79785 * 9 8 7 11 11 C 1.53781 * 113.61961 * 174.99504 * 9 8 7 12 12 C 1.53787 * 87.07999 * 140.06500 * 11 9 8 13 13 H 1.09007 * 113.60991 * 219.93603 * 12 11 9 14 14 N 1.46497 * 113.61173 * 89.11873 * 12 11 9 15 15 C 1.34777 * 119.99525 * 154.99569 * 14 12 11 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 12 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 12 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00336 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99494 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47141 * 90.00156 * 23 21 19 25 25 H 1.48505 * 109.47177 * 209.99950 * 23 21 19 26 26 H 1.48496 * 109.47259 * 329.99923 * 23 21 19 27 27 C 1.53777 * 87.08211 * 334.56777 * 12 11 9 28 28 C 1.39710 * 120.04096 * 359.44874 * 6 5 4 29 29 N 1.31573 * 120.03844 * 0.27586 * 28 6 5 30 30 H 1.08002 * 120.01942 * 359.97438 * 4 3 2 31 31 H 0.96993 * 119.99836 * 359.72203 * 7 6 5 32 32 H 1.09000 * 109.47806 * 59.99419 * 8 7 6 33 33 H 1.09007 * 109.47035 * 299.99443 * 8 7 6 34 34 H 1.08999 * 113.60880 * 25.51771 * 11 9 8 35 35 H 1.08996 * 113.61697 * 254.61303 * 11 9 8 36 36 H 0.97000 * 120.00580 * 335.00315 * 14 12 11 37 37 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 38 38 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 39 39 H 0.97003 * 119.99714 * 180.02562 * 22 21 19 40 40 H 1.08999 * 113.61256 * 139.97675 * 27 12 11 41 41 H 1.08996 * 113.61858 * 270.88225 * 27 12 11 42 42 H 1.08003 * 119.97899 * 180.25364 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2667 -1.0050 -0.6693 5 7 4.5868 -1.0001 -0.6736 6 6 5.2493 -0.0447 -0.0320 7 7 6.6350 -0.0432 -0.0320 8 6 7.3663 1.0139 0.6707 9 6 8.8708 0.7824 0.5164 10 1 9.1550 0.5096 -0.5000 11 6 9.7318 1.9066 1.1161 12 6 10.6794 0.8050 1.6198 13 1 11.0688 0.9884 2.6212 14 7 11.7259 0.4468 0.6592 15 6 12.8842 -0.0883 1.0931 16 8 13.0601 -0.2738 2.2787 17 6 13.9583 -0.4625 0.1045 18 16 15.3765 -1.1577 0.9886 19 6 16.4470 -1.4973 -0.3690 20 1 16.1313 -1.2681 -1.3761 21 6 17.6964 -2.0585 -0.1442 22 7 18.4963 -2.3118 -1.1584 23 14 18.2427 -2.4544 1.5978 24 1 17.8334 -3.8397 1.9421 25 1 19.7201 -2.3368 1.6920 26 1 17.6089 -1.5014 2.5439 27 6 9.4674 -0.1410 1.5917 28 6 4.5501 0.9622 0.6382 29 7 3.2343 0.9619 0.6390 30 1 2.7277 -1.7845 -1.1873 31 1 7.1207 -0.7421 -0.4972 32 1 7.1030 0.9967 1.7283 33 1 7.1020 1.9825 0.2462 34 1 9.2365 2.4561 1.9166 35 1 10.1804 2.5597 0.3675 36 1 11.5852 0.5949 -0.2891 37 1 13.5674 -1.2025 -0.5941 38 1 14.2721 0.4252 -0.4446 39 1 19.3693 -2.7043 -1.0013 40 1 9.7024 -1.1409 1.2270 41 1 8.8999 -0.1513 2.5222 42 1 5.0899 1.7410 1.1563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114756389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:49 Heat of formation + Delta-G solvation = 69.479436 kcal Electronic energy + Delta-G solvation = -25173.243413 eV Core-core repulsion = 21280.788920 eV Total energy + Delta-G solvation = -3892.454493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76583 -40.48476 -38.60380 -37.36457 -36.38453 -34.79138 -33.36679 -32.48799 -31.37126 -29.56896 -27.96999 -26.19990 -25.67890 -25.57784 -24.66020 -22.88722 -21.10293 -20.16629 -19.72646 -18.64623 -18.05706 -17.88869 -16.70884 -16.33287 -16.08493 -15.88176 -15.63346 -15.25736 -15.22377 -15.00350 -14.78254 -14.38071 -14.21106 -13.80310 -13.55692 -13.46170 -13.33192 -13.20518 -12.98125 -12.84129 -12.66743 -12.23444 -12.11869 -11.95159 -11.57874 -11.31551 -11.07295 -11.04786 -10.95125 -10.70166 -10.57003 -9.90965 -9.86170 -9.64761 -9.12845 -9.04315 -8.60682 -8.56714 -6.98078 -6.33809 -4.06281 -0.02731 0.47663 2.05537 2.17496 2.36195 2.66188 2.82339 3.04973 3.20334 3.29341 3.31132 3.46007 3.56320 3.68472 3.75378 3.94494 3.96145 4.09729 4.16475 4.28358 4.43400 4.45260 4.61437 4.66019 4.81295 4.85510 4.89645 5.05406 5.14425 5.23944 5.26880 5.33794 5.53629 5.57530 5.62454 5.67710 5.80112 5.92665 5.94504 6.46837 6.59185 6.68724 6.98238 7.17914 7.46887 7.89054 8.36094 8.36926 9.12288 10.75371 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.030530 B = 0.001422 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.907683 B =19686.769943 C =20100.737507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.279 3.721 3 C 0.051 3.949 4 C 0.173 3.827 5 N -0.504 5.504 6 C 0.384 3.616 7 N -0.694 5.694 8 C 0.126 3.874 9 C -0.126 4.126 10 H 0.100 0.900 11 C -0.135 4.135 12 C 0.124 3.876 13 H 0.105 0.895 14 N -0.721 5.721 15 C 0.534 3.466 16 O -0.516 6.516 17 C -0.125 4.125 18 S -0.141 6.141 19 C -0.523 4.523 20 H 0.088 0.912 21 C 0.097 3.903 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C -0.149 4.149 28 C 0.004 3.996 29 N -0.367 5.367 30 H 0.180 0.820 31 H 0.414 0.586 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.399 0.601 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.425 8.342 1.193 28.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.039 4.039 3 C -0.089 4.089 4 C 0.008 3.992 5 N -0.226 5.226 6 C 0.141 3.859 7 N -0.323 5.323 8 C 0.002 3.998 9 C -0.145 4.145 10 H 0.118 0.882 11 C -0.173 4.173 12 C 0.018 3.982 13 H 0.123 0.877 14 N -0.374 5.374 15 C 0.320 3.680 16 O -0.390 6.390 17 C -0.276 4.276 18 S 0.086 5.914 19 C -0.671 4.671 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.187 4.187 28 C -0.170 4.170 29 N -0.081 5.081 30 H 0.197 0.803 31 H 0.251 0.749 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.234 0.766 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -28.549 8.124 3.211 29.856 hybrid contribution 0.855 -0.293 -1.554 1.798 sum -27.694 7.831 1.658 28.827 Atomic orbital electron populations 1.81286 1.11406 1.07053 1.07918 1.24642 0.91221 0.94074 0.93941 1.16903 0.87155 0.98121 1.06758 1.23454 0.88922 0.95208 0.91637 1.68157 1.08407 1.24605 1.21429 1.19672 0.86893 0.90148 0.89223 1.44695 1.01122 1.30613 1.55911 1.21738 0.90993 0.89982 0.97060 1.22875 0.92180 0.98905 1.00518 0.88156 1.23312 0.96482 0.96187 1.01345 1.21697 0.87024 0.94626 0.94893 0.87672 1.45668 1.15858 1.65920 1.09962 1.20320 0.81956 0.76070 0.89672 1.90706 1.79215 1.51801 1.17250 1.23285 0.98271 1.04827 1.01185 1.84807 1.11513 1.80981 1.14140 1.22307 1.02886 1.48386 0.93493 0.89386 1.24707 0.95171 0.93714 0.97628 1.69936 1.09402 1.41561 1.30695 0.86742 0.79041 0.80979 0.85125 1.19194 1.19889 1.15933 1.23563 0.97219 0.99134 0.98824 1.23150 0.89472 1.00549 1.03856 1.68084 1.08393 1.20497 1.11129 0.80322 0.74908 0.90481 0.90598 0.88282 0.90170 0.76624 0.88470 0.88401 0.91896 0.90579 0.88917 0.80678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.09 18.54 41.84 0.78 -3.32 16 2 C 0.28 2.28 15.56 -22.47 -0.35 1.93 16 3 C 0.05 0.35 6.59 -84.82 -0.56 -0.21 16 4 C 0.17 0.91 10.92 -16.98 -0.19 0.72 16 5 N -0.50 -3.21 10.52 -11.92 -0.13 -3.33 16 6 C 0.38 2.05 7.66 -154.89 -1.19 0.87 16 7 N -0.69 -2.51 5.71 -60.29 -0.34 -2.85 16 8 C 0.13 0.26 4.73 -4.04 -0.02 0.24 16 9 C -0.13 -0.40 3.63 -89.81 -0.33 -0.73 16 10 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 11 C -0.13 -0.54 7.39 -25.92 -0.19 -0.73 16 12 C 0.12 0.98 4.32 -67.12 -0.29 0.69 16 13 H 0.11 1.07 7.47 -51.93 -0.39 0.69 16 14 N -0.72 -7.24 5.26 -53.01 -0.28 -7.52 16 15 C 0.53 8.41 7.85 -10.98 -0.09 8.33 16 16 O -0.52 -10.21 15.46 5.55 0.09 -10.12 16 17 C -0.13 -2.22 6.16 36.01 0.22 -2.00 16 18 S -0.14 -3.42 18.55 -107.50 -1.99 -5.41 16 19 C -0.52 -14.63 10.04 30.94 0.31 -14.32 16 20 H 0.09 2.56 8.03 -52.48 -0.42 2.14 16 21 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 22 N -0.88 -26.00 13.97 55.49 0.78 -25.22 16 23 Si 0.86 21.25 27.74 -169.99 -4.72 16.53 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 27 C -0.15 -0.87 7.43 -25.92 -0.19 -1.06 16 28 C 0.00 0.02 10.48 -17.11 -0.18 -0.16 16 29 N -0.37 -2.67 10.41 -10.72 -0.11 -2.78 16 30 H 0.18 0.41 8.06 -52.49 -0.42 -0.01 16 31 H 0.41 1.51 8.60 -40.82 -0.35 1.16 16 32 H 0.08 0.11 7.64 -51.93 -0.40 -0.28 16 33 H 0.08 0.08 7.93 -51.92 -0.41 -0.33 16 34 H 0.10 0.26 8.10 -51.93 -0.42 -0.16 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.40 2.90 8.70 -40.82 -0.36 2.55 16 37 H 0.10 1.60 8.14 -51.91 -0.42 1.17 16 38 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.47 7.90 -51.93 -0.41 0.06 16 42 H 0.18 0.43 6.70 -52.48 -0.35 0.08 16 LS Contribution 383.51 15.07 5.78 5.78 Total: -1.00 -35.98 383.51 -8.48 -44.46 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.20 Total: -2.42 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -3.13 Total: -3.78 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.69 Total: -45.03 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.72 Total: 16.53 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.98 -8.48 -44.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114756389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.938 kcal (2) G-P(sol) polarization free energy of solvation -35.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds