Wall clock time and date at job start Wed Apr 1 2020 04:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39553 * 120.02123 * 33.63864 * 3 2 1 5 5 N 1.32012 * 119.96529 * 179.70198 * 4 3 2 6 6 C 1.32788 * 120.00342 * 0.55251 * 5 4 3 7 7 N 1.38573 * 119.97809 * 179.72556 * 6 5 4 8 8 C 1.46496 * 119.99777 * 179.72916 * 7 6 5 9 9 C 1.53000 * 109.47203 * 179.97438 * 8 7 6 10 10 H 1.09007 * 112.84914 * 43.79785 * 9 8 7 11 11 C 1.53781 * 113.61961 * 174.99504 * 9 8 7 12 12 C 1.53787 * 87.07999 * 140.06500 * 11 9 8 13 13 H 1.09007 * 113.60991 * 219.93603 * 12 11 9 14 14 N 1.46497 * 113.61173 * 89.11873 * 12 11 9 15 15 C 1.34777 * 119.99525 * 154.99569 * 14 12 11 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 12 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 12 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00336 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99494 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47141 * 90.00156 * 23 21 19 25 25 H 1.48505 * 109.47177 * 209.99950 * 23 21 19 26 26 H 1.48496 * 109.47259 * 329.99923 * 23 21 19 27 27 C 1.53777 * 87.08211 * 334.56777 * 12 11 9 28 28 C 1.39710 * 120.04096 * 359.44874 * 6 5 4 29 29 N 1.31573 * 120.03844 * 0.27586 * 28 6 5 30 30 H 1.08002 * 120.01942 * 359.97438 * 4 3 2 31 31 H 0.96993 * 119.99836 * 359.72203 * 7 6 5 32 32 H 1.09000 * 109.47806 * 59.99419 * 8 7 6 33 33 H 1.09007 * 109.47035 * 299.99443 * 8 7 6 34 34 H 1.08999 * 113.60880 * 25.51771 * 11 9 8 35 35 H 1.08996 * 113.61697 * 254.61303 * 11 9 8 36 36 H 0.97000 * 120.00580 * 335.00315 * 14 12 11 37 37 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 38 38 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 39 39 H 0.97003 * 119.99714 * 180.02562 * 22 21 19 40 40 H 1.08999 * 113.61256 * 139.97675 * 27 12 11 41 41 H 1.08996 * 113.61858 * 270.88225 * 27 12 11 42 42 H 1.08003 * 119.97899 * 180.25364 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2667 -1.0050 -0.6693 5 7 4.5868 -1.0001 -0.6736 6 6 5.2493 -0.0447 -0.0320 7 7 6.6350 -0.0432 -0.0320 8 6 7.3663 1.0139 0.6707 9 6 8.8708 0.7824 0.5164 10 1 9.1550 0.5096 -0.5000 11 6 9.7318 1.9066 1.1161 12 6 10.6794 0.8050 1.6198 13 1 11.0688 0.9884 2.6212 14 7 11.7259 0.4468 0.6592 15 6 12.8842 -0.0883 1.0931 16 8 13.0601 -0.2738 2.2787 17 6 13.9583 -0.4625 0.1045 18 16 15.3765 -1.1577 0.9886 19 6 16.4470 -1.4973 -0.3690 20 1 16.1313 -1.2681 -1.3761 21 6 17.6964 -2.0585 -0.1442 22 7 18.4963 -2.3118 -1.1584 23 14 18.2427 -2.4544 1.5978 24 1 17.8334 -3.8397 1.9421 25 1 19.7201 -2.3368 1.6920 26 1 17.6089 -1.5014 2.5439 27 6 9.4674 -0.1410 1.5917 28 6 4.5501 0.9622 0.6382 29 7 3.2343 0.9619 0.6390 30 1 2.7277 -1.7845 -1.1873 31 1 7.1207 -0.7421 -0.4972 32 1 7.1030 0.9967 1.7283 33 1 7.1020 1.9825 0.2462 34 1 9.2365 2.4561 1.9166 35 1 10.1804 2.5597 0.3675 36 1 11.5852 0.5949 -0.2891 37 1 13.5674 -1.2025 -0.5941 38 1 14.2721 0.4252 -0.4446 39 1 19.3693 -2.7043 -1.0013 40 1 9.7024 -1.1409 1.2270 41 1 8.8999 -0.1513 2.5222 42 1 5.0899 1.7410 1.1563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114756389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:48 Heat of formation + Delta-G solvation = 42.705556 kcal Electronic energy + Delta-G solvation = -25174.404415 eV Core-core repulsion = 21280.788920 eV Total energy + Delta-G solvation = -3893.615495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15483 -41.22896 -39.52110 -37.95055 -36.89861 -35.22596 -34.67116 -34.30389 -31.86560 -30.74109 -28.49698 -27.83195 -26.60230 -25.97546 -25.12049 -23.32810 -22.14951 -20.64747 -20.32738 -19.86938 -19.05335 -18.34734 -17.92096 -17.18718 -16.97573 -16.59921 -16.44180 -16.31115 -16.02583 -15.82602 -15.56858 -15.19988 -14.97905 -14.89851 -14.69592 -14.42992 -14.13368 -13.97907 -13.80747 -13.66875 -13.34282 -13.28204 -13.03584 -12.93328 -12.66264 -12.65114 -12.42855 -11.92364 -11.82493 -11.54014 -11.37707 -11.16623 -10.99428 -10.96025 -10.52405 -10.26212 -10.01698 -8.98637 -8.93560 -8.51103 -6.21706 -0.44781 0.09515 1.00559 1.31945 1.46596 1.47542 1.56972 1.57776 1.82931 1.86910 2.23393 2.27562 2.56518 2.72893 2.86122 2.87550 3.32062 3.43959 3.55335 3.62868 3.70755 3.82065 3.88628 3.98188 4.06179 4.26067 4.34752 4.48537 4.54226 4.60155 4.71084 4.87246 4.89960 4.97426 5.01220 5.16069 5.20623 5.30641 5.62701 5.70548 5.71103 6.11918 6.20407 6.31443 6.45962 6.51078 6.81954 6.94471 7.24353 8.61207 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.030530 B = 0.001422 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.907683 B =19686.769943 C =20100.737507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.301 3.699 3 C 0.030 3.970 4 C 0.183 3.817 5 N -0.526 5.526 6 C 0.384 3.616 7 N -0.686 5.686 8 C 0.124 3.876 9 C -0.108 4.108 10 H 0.106 0.894 11 C -0.116 4.116 12 C 0.100 3.900 13 H 0.079 0.921 14 N -0.694 5.694 15 C 0.537 3.463 16 O -0.563 6.563 17 C -0.112 4.112 18 S -0.177 6.177 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.917 5.917 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.260 1.260 26 H -0.236 1.236 27 C -0.147 4.147 28 C 0.010 3.990 29 N -0.391 5.391 30 H 0.203 0.797 31 H 0.414 0.586 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.416 0.584 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.277 0.723 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.487 9.515 1.471 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.015 4.015 3 C -0.109 4.109 4 C 0.019 3.981 5 N -0.249 5.249 6 C 0.139 3.861 7 N -0.314 5.314 8 C 0.001 3.999 9 C -0.127 4.127 10 H 0.124 0.876 11 C -0.154 4.154 12 C -0.005 4.005 13 H 0.097 0.903 14 N -0.347 5.347 15 C 0.323 3.677 16 O -0.441 6.441 17 C -0.263 4.263 18 S 0.049 5.951 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.159 4.159 22 N -0.555 5.555 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.184 1.184 26 H -0.160 1.160 27 C -0.185 4.185 28 C -0.166 4.166 29 N -0.105 5.105 30 H 0.219 0.781 31 H 0.251 0.749 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.254 0.746 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -29.655 9.320 3.446 31.275 hybrid contribution 1.184 -0.591 -1.704 2.157 sum -28.471 8.728 1.743 29.830 Atomic orbital electron populations 1.81293 1.12665 1.08702 1.09774 1.24866 0.91447 0.92692 0.92537 1.16874 0.86308 0.99270 1.08483 1.23749 0.88712 0.94985 0.90692 1.68218 1.08756 1.25423 1.22466 1.19851 0.87479 0.89941 0.88794 1.44819 1.00557 1.30747 1.55250 1.21886 0.89709 0.90346 0.97956 1.22733 0.92970 0.97174 0.99801 0.87611 1.23272 0.94820 0.95393 1.01957 1.22026 0.87047 0.98005 0.93441 0.90280 1.45411 1.14392 1.63503 1.11421 1.19929 0.82982 0.76451 0.88367 1.90694 1.80311 1.54333 1.18758 1.23284 0.96265 1.05484 1.01289 1.84731 1.14157 1.81897 1.14304 1.22471 1.03759 1.47824 0.93639 0.91926 1.25545 0.95389 0.93697 1.01222 1.70015 1.10097 1.42725 1.32685 0.85883 0.79222 0.80731 0.80632 1.18773 1.18433 1.16007 1.23559 0.96381 0.98165 1.00421 1.23565 0.88796 1.00870 1.03339 1.68037 1.09534 1.21077 1.11845 0.78066 0.74857 0.89115 0.88444 0.86160 0.89369 0.74620 0.86886 0.86795 0.91401 0.92403 0.87918 0.77962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.36 18.54 19.00 0.35 -9.00 16 2 C 0.30 4.90 15.56 88.33 1.37 6.28 16 3 C 0.03 0.38 6.59 40.49 0.27 0.64 16 4 C 0.18 1.66 10.92 84.98 0.93 2.59 16 5 N -0.53 -5.64 10.52 -191.64 -2.02 -7.65 16 6 C 0.38 3.04 7.66 133.23 1.02 4.06 16 7 N -0.69 -2.55 5.71 -344.65 -1.97 -4.52 16 8 C 0.12 -0.06 4.73 86.38 0.41 0.35 16 9 C -0.11 -0.26 3.63 -10.27 -0.04 -0.29 16 10 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 11 C -0.12 -0.45 7.39 31.12 0.23 -0.22 16 12 C 0.10 1.36 4.32 45.52 0.20 1.56 16 13 H 0.08 1.55 7.47 -2.38 -0.02 1.53 16 14 N -0.69 -12.47 5.26 -440.03 -2.32 -14.79 16 15 C 0.54 16.35 7.85 87.66 0.69 17.04 16 16 O -0.56 -22.23 15.46 -3.04 -0.05 -22.28 16 17 C -0.11 -3.88 6.16 71.24 0.44 -3.44 16 18 S -0.18 -8.62 18.55 -56.49 -1.05 -9.67 16 19 C -0.53 -30.00 10.04 67.95 0.68 -29.32 16 20 H 0.06 3.74 8.03 -2.91 -0.02 3.71 16 21 C 0.05 2.70 5.50 84.86 0.47 3.16 16 22 N -0.92 -54.89 13.97 21.65 0.30 -54.59 16 23 Si 0.91 44.04 27.74 68.60 1.90 45.94 16 24 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 25 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.24 -11.34 6.74 99.48 0.67 -10.67 16 27 C -0.15 -1.33 7.43 31.12 0.23 -1.10 16 28 C 0.01 0.07 10.48 85.09 0.89 0.96 16 29 N -0.39 -5.07 10.41 -187.84 -1.96 -7.03 16 30 H 0.20 0.63 8.06 -2.91 -0.02 0.61 16 31 H 0.41 1.74 8.60 -92.71 -0.80 0.94 16 32 H 0.09 -0.19 7.64 -2.39 -0.02 -0.21 16 33 H 0.10 -0.33 7.93 -2.38 -0.02 -0.35 16 34 H 0.12 0.06 8.10 -2.39 -0.02 0.04 16 35 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.42 4.75 8.70 -92.71 -0.81 3.94 16 37 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 38 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 39 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.10 0.75 7.90 -2.39 -0.02 0.73 16 42 H 0.20 0.16 6.70 -2.91 -0.02 0.14 16 Total: -1.00 -81.27 383.51 0.45 -80.82 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -0.55 Total: 0.50 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 7.79 Total: 2.27 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -7.60 Total: -97.58 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.05 Total: -22.28 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.90 Total: 45.94 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.05 Total: -9.67 kcal Total: -81.27 0.45 -80.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114756389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.528 kcal (2) G-P(sol) polarization free energy of solvation -81.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds