Wall clock time and date at job start Wed Apr 1 2020 04:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35220 * 126.06089 * 2 1 4 4 C 1.40461 * 107.86713 * 179.84602 * 3 2 1 5 5 N 1.39931 * 125.97959 * 180.18340 * 4 3 2 6 6 C 1.34777 * 119.99887 * 0.30149 * 5 4 3 7 7 O 1.21388 * 120.00371 * 359.97438 * 6 5 4 8 8 C 1.49257 * 119.99773 * 179.97438 * 6 5 4 9 9 O 1.21376 * 120.00315 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99773 * 179.97438 * 8 6 5 11 11 C 1.39340 * 120.00011 * 174.91709 * 10 8 6 12 12 C 1.39061 * 119.67424 * 185.07111 * 11 10 8 13 13 C 1.38348 * 119.12420 * 179.97438 * 12 11 10 14 14 C 1.39016 * 118.48020 * 359.97438 * 13 12 11 15 15 F 1.35091 * 120.36729 * 179.97438 * 14 13 12 16 16 C 1.38308 * 119.26357 * 0.02562 * 14 13 12 17 17 N 1.31928 * 120.81628 * 359.74211 * 16 14 13 18 18 N 1.31274 * 108.03744 * 0.42111 * 4 3 2 19 19 N 1.34991 * 126.06881 * 180.30643 * 2 1 3 20 20 C 1.46505 * 125.96458 * 359.97438 * 19 2 1 21 21 C 1.50702 * 109.47219 * 90.00037 * 20 19 2 22 22 H 1.08000 * 119.99597 * 359.97438 * 21 20 19 23 23 C 1.37877 * 120.00047 * 179.97438 * 21 20 19 24 24 N 1.31518 * 119.99804 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99810 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47432 * 60.00255 * 25 23 21 27 27 H 1.48501 * 109.47110 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47287 * 299.99862 * 25 23 21 29 29 H 1.09000 * 109.47132 * 269.68686 * 1 2 3 30 30 H 1.09003 * 109.46724 * 149.68886 * 1 2 3 31 31 H 1.08994 * 109.47212 * 29.69610 * 1 2 3 32 32 H 1.07998 * 126.06495 * 0.02562 * 3 2 1 33 33 H 0.97003 * 119.99875 * 180.29540 * 5 4 3 34 34 H 0.96995 * 120.00109 * 354.91554 * 10 8 6 35 35 H 1.08002 * 120.43691 * 359.95050 * 12 11 10 36 36 H 1.08004 * 120.76113 * 180.02562 * 13 12 11 37 37 H 1.07998 * 119.59256 * 179.97438 * 16 14 13 38 38 H 1.09003 * 109.46673 * 209.99622 * 20 19 2 39 39 H 1.08996 * 109.47482 * 329.99882 * 20 19 2 40 40 H 0.96999 * 119.99348 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3029 1.0931 0.0000 4 6 3.6373 0.6545 0.0036 5 7 4.7718 1.4736 0.0084 6 6 4.6350 2.8144 0.0161 7 8 3.5276 3.3115 0.0183 8 6 5.8451 3.6880 0.0217 9 8 6.9525 3.1910 0.0199 10 7 5.7083 5.0288 0.0289 11 6 6.8332 5.8434 0.1411 12 6 6.6774 7.2206 0.2543 13 6 7.8021 8.0185 0.3656 14 6 9.0511 7.4082 0.3604 15 9 10.1745 8.1509 0.4664 16 6 9.1308 6.0323 0.2444 17 7 8.0392 5.2982 0.1445 18 7 3.6338 -0.6582 -0.0035 19 7 2.3017 -1.0911 -0.0058 20 6 1.8498 -2.4847 -0.0128 21 6 1.6943 -2.9554 -1.4359 22 1 1.9101 -2.2834 -2.2535 23 6 1.2766 -4.2437 -1.6943 24 7 1.0143 -5.0620 -0.6986 25 14 1.0833 -4.8268 -3.4583 26 1 2.3886 -4.7256 -4.1590 27 1 0.6265 -6.2398 -3.4654 28 1 0.0815 -3.9787 -4.1530 29 1 -0.3633 -0.0056 1.0276 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8926 -0.5091 32 1 1.9714 2.1210 0.0004 33 1 5.6568 1.0764 0.0063 34 1 4.8267 5.4267 -0.0441 35 1 5.6915 7.6614 0.2549 36 1 7.7117 9.0911 0.4554 37 1 10.0984 5.5527 0.2394 38 1 2.5846 -3.1074 0.4976 39 1 0.8914 -2.5585 0.5010 40 1 0.7201 -5.9682 -0.8805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117675940.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:18 Heat of formation + Delta-G solvation = 4.700205 kcal Electronic energy + Delta-G solvation = -28237.344174 eV Core-core repulsion = 23775.867467 eV Total energy + Delta-G solvation = -4461.476707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.93103 -42.64812 -42.06023 -40.94645 -39.54367 -36.92280 -36.00593 -35.28545 -33.58832 -33.08892 -32.67193 -31.01768 -28.87338 -27.91570 -27.00842 -25.38268 -24.84296 -23.93767 -22.34310 -21.43088 -21.08952 -19.82436 -18.94647 -18.78735 -18.55811 -17.94201 -17.82656 -17.42866 -17.26491 -16.82529 -16.78452 -16.30425 -16.01910 -15.77734 -15.46828 -15.31012 -14.85735 -14.77590 -14.48658 -14.43087 -14.28845 -13.83212 -13.71718 -13.63954 -13.61255 -13.17377 -12.98924 -12.68711 -12.64939 -12.25431 -12.18365 -11.96704 -11.59853 -11.45332 -11.11241 -11.01907 -10.73413 -10.37333 -9.67214 -9.39271 -9.24410 -8.33481 -6.50602 -0.45375 0.05403 0.22218 0.66583 1.07480 1.38598 1.40397 1.48654 1.65067 1.68689 2.17126 2.29751 2.39371 2.62033 2.96019 2.97111 3.06951 3.40944 3.74286 3.80172 3.81176 3.98482 4.10084 4.41746 4.47798 4.64192 4.75221 4.80204 4.81297 4.85275 4.89372 4.94276 4.97772 5.08654 5.20962 5.50607 5.52928 5.68359 5.77987 5.80484 5.96612 6.22469 6.35332 6.60109 6.61440 6.91313 6.93024 7.20278 8.72694 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.025935 B = 0.001784 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.349162 B =15687.559285 C =16218.854394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.091 3.909 3 C -0.291 4.291 4 C 0.266 3.734 5 N -0.598 5.598 6 C 0.524 3.476 7 O -0.499 6.499 8 C 0.519 3.481 9 O -0.470 6.470 10 N -0.618 5.618 11 C 0.325 3.675 12 C -0.149 4.149 13 C -0.071 4.071 14 C 0.016 3.984 15 F -0.134 7.134 16 C 0.095 3.905 17 N -0.492 5.492 18 N -0.354 5.354 19 N -0.337 5.337 20 C 0.274 3.726 21 C -0.554 4.554 22 H 0.051 0.949 23 C 0.024 3.976 24 N -0.917 5.917 25 Si 0.970 3.030 26 H -0.277 1.277 27 H -0.274 1.274 28 H -0.264 1.264 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.179 0.821 33 H 0.429 0.571 34 H 0.446 0.554 35 H 0.191 0.809 36 H 0.188 0.812 37 H 0.179 0.821 38 H 0.024 0.976 39 H 0.056 0.944 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.982 28.976 2.782 30.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 C -0.321 4.321 4 C 0.012 3.988 5 N -0.248 5.248 6 C 0.304 3.696 7 O -0.372 6.372 8 C 0.298 3.702 9 O -0.338 6.338 10 N -0.268 5.268 11 C 0.095 3.905 12 C -0.171 4.171 13 C -0.097 4.097 14 C -0.006 4.006 15 F -0.113 7.113 16 C -0.064 4.064 17 N -0.206 5.206 18 N -0.184 5.184 19 N -0.120 5.120 20 C 0.155 3.845 21 C -0.592 4.592 22 H 0.069 0.931 23 C -0.178 4.178 24 N -0.555 5.555 25 Si 0.794 3.206 26 H -0.203 1.203 27 H -0.198 1.198 28 H -0.188 1.188 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.196 0.804 33 H 0.267 0.733 34 H 0.288 0.712 35 H 0.208 0.792 36 H 0.205 0.795 37 H 0.196 0.804 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.667 26.669 2.781 28.179 hybrid contribution 0.013 0.513 -0.655 0.832 sum 8.680 27.182 2.126 28.613 Atomic orbital electron populations 1.20535 0.84968 1.04637 1.04300 1.21833 0.96862 0.86215 0.99062 1.21484 0.89034 1.00430 1.21166 1.19151 0.88118 0.89268 1.02226 1.42047 1.08248 1.04630 1.69854 1.19989 0.89733 0.82020 0.77867 1.90704 1.26185 1.73810 1.46528 1.19711 0.88319 0.83661 0.78533 1.90915 1.26295 1.73896 1.42732 1.42938 1.10275 1.04212 1.69405 1.18745 0.86022 0.88810 0.96915 1.21786 1.02596 0.89641 1.03084 1.21849 0.89079 1.03289 0.95529 1.18870 0.83957 0.90479 1.07323 1.91520 1.49753 1.76293 1.93741 1.22960 0.97794 0.89378 0.96267 1.67575 0.97893 1.39964 1.15191 1.77251 1.00435 1.09956 1.30783 1.48863 1.01526 1.07789 1.53836 1.19298 0.95063 0.72306 0.97854 1.21402 1.47668 0.98412 0.91750 0.93116 1.25716 0.93980 0.95903 1.02174 1.69994 1.44941 1.07414 1.33125 0.85429 0.78697 0.77706 0.78807 1.20299 1.19835 1.18816 0.88695 0.91497 0.87444 0.80372 0.73293 0.71189 0.79223 0.79504 0.80442 0.95777 0.92591 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.63 9.89 71.23 0.70 -1.93 16 2 C 0.09 3.59 6.92 41.38 0.29 3.88 16 3 C -0.29 -10.87 9.51 22.12 0.21 -10.66 16 4 C 0.27 10.49 8.10 133.40 1.08 11.57 16 5 N -0.60 -18.83 5.43 -308.98 -1.68 -20.51 16 6 C 0.52 13.96 7.85 87.21 0.68 14.64 16 7 O -0.50 -13.75 13.60 -3.36 -0.05 -13.79 16 8 C 0.52 12.09 7.84 87.21 0.68 12.78 16 9 O -0.47 -13.54 14.73 -3.33 -0.05 -13.59 16 10 N -0.62 -9.95 5.38 -309.84 -1.67 -11.61 16 11 C 0.33 5.25 7.42 132.94 0.99 6.24 16 12 C -0.15 -1.14 9.94 22.49 0.22 -0.91 16 13 C -0.07 -0.52 10.15 22.48 0.23 -0.29 16 14 C 0.02 0.21 7.34 22.47 0.16 0.37 16 15 F -0.13 -1.86 17.28 44.97 0.78 -1.08 16 16 C 0.09 1.56 11.16 84.70 0.95 2.51 16 17 N -0.49 -10.54 7.88 -192.89 -1.52 -12.06 16 18 N -0.35 -16.48 12.59 -54.53 -0.69 -17.16 16 19 N -0.34 -15.90 3.59 -338.44 -1.22 -17.11 16 20 C 0.27 14.21 5.81 85.63 0.50 14.71 16 21 C -0.55 -30.63 9.39 25.60 0.24 -30.39 16 22 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 23 C 0.02 1.27 5.46 84.65 0.46 1.74 16 24 N -0.92 -51.31 13.29 21.45 0.28 -51.03 16 25 Si 0.97 42.70 29.54 68.60 2.03 44.73 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 29 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.07 2.29 7.71 -2.39 -0.02 2.27 16 31 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.18 5.94 5.91 -2.91 -0.02 5.93 16 33 H 0.43 12.55 8.29 -92.71 -0.77 11.79 16 34 H 0.45 4.38 8.18 -92.71 -0.76 3.63 16 35 H 0.19 -0.07 8.06 -2.91 -0.02 -0.10 16 36 H 0.19 0.11 8.06 -2.91 -0.02 0.08 16 37 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 38 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 2.85 7.65 -2.39 -0.02 2.83 16 40 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -73.41 363.89 3.24 -70.17 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.38 Total: 18.81 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 7.40 Total: 24.24 kcal Atomic # 7 Polarization: -123.00 SS G_CDS: -6.48 Total: -129.48 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.09 Total: -27.38 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.78 Total: -1.08 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -73.41 3.24 -70.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117675940.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.869 kcal (2) G-P(sol) polarization free energy of solvation -73.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds