Wall clock time and date at job start Wed Apr 1 2020 05:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.87342 * 2 1 4 4 C 1.54322 * 109.88369 * 238.98613 * 2 1 3 5 5 H 1.09002 * 110.71963 * 336.59761 * 4 2 1 6 6 N 1.46502 * 110.72235 * 99.69494 * 4 2 1 7 7 C 1.38405 * 120.00225 * 202.55813 * 6 4 2 8 8 N 1.32730 * 120.17011 * 359.72418 * 7 6 4 9 9 C 1.32114 * 119.99738 * 179.71889 * 8 7 6 10 10 C 1.38650 * 120.35184 * 0.55727 * 9 8 7 11 11 N 1.31842 * 120.35165 * 359.71981 * 10 9 8 12 12 C 1.33037 * 119.99176 * 0.02562 * 11 10 9 13 13 C 1.43193 * 120.17409 * 179.97438 * 12 11 10 14 14 N 5.44372 * 110.93978 * 307.82179 * 2 1 3 15 15 C 1.55157 * 102.94206 * 218.23242 * 4 2 1 16 16 C 1.54909 * 101.57958 * 35.50243 * 15 4 2 17 17 N 1.47018 * 110.01041 * 121.09752 * 2 1 3 18 18 C 1.34778 * 125.65052 * 298.47272 * 17 2 1 19 19 O 1.21277 * 119.99723 * 359.97438 * 18 17 2 20 20 C 1.50700 * 120.00165 * 180.02562 * 18 17 2 21 21 S 1.80998 * 109.46951 * 179.97438 * 20 18 17 22 22 C 1.76207 * 99.99710 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99820 * 359.97438 * 22 21 20 24 24 C 1.38797 * 120.00024 * 179.97438 * 22 21 20 25 25 N 1.31632 * 120.00051 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00225 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47105 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.47151 * 119.99805 * 26 24 22 29 29 H 1.48495 * 109.47196 * 239.99876 * 26 24 22 30 30 H 1.09000 * 109.47137 * 181.00854 * 1 2 3 31 31 H 1.08997 * 109.47286 * 301.01993 * 1 2 3 32 32 H 1.09002 * 109.47086 * 61.01582 * 1 2 3 33 33 H 0.97000 * 119.99643 * 22.55598 * 6 4 2 34 34 H 1.07997 * 119.82710 * 180.27826 * 9 8 7 35 35 H 1.08002 * 119.82276 * 179.73918 * 10 9 8 36 36 H 1.09000 * 111.00495 * 153.57626 * 15 4 2 37 37 H 1.08997 * 111.00429 * 277.43204 * 15 4 2 38 38 H 1.08998 * 110.36917 * 204.14700 * 16 15 4 39 39 H 1.09009 * 110.46209 * 81.87337 * 16 15 4 40 40 H 1.09003 * 109.46748 * 299.99694 * 20 18 17 41 41 H 1.08998 * 109.47064 * 59.99584 * 20 18 17 42 42 H 0.97001 * 120.00185 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 1 1.3062 -1.4456 -1.6187 6 7 2.4482 0.1991 -2.2902 7 6 2.4979 -0.2107 -3.6113 8 7 2.1951 -1.4623 -3.9332 9 6 2.2383 -1.8484 -5.1960 10 6 2.6100 -0.9553 -6.1893 11 7 2.9188 0.2896 -5.8844 12 6 2.8751 0.6945 -4.6180 13 6 3.2102 2.0457 -4.2824 14 7 3.4755 3.1177 -4.0161 15 6 3.2901 -1.5100 -0.6954 16 6 2.8196 -1.8769 0.7342 17 7 2.0331 -0.7135 1.1829 18 6 1.8113 -0.3626 2.4652 19 8 1.1456 0.6189 2.7188 20 6 2.3914 -1.1893 3.5837 21 16 1.9207 -0.4663 5.1749 22 6 2.7086 -1.5993 6.2707 23 1 3.2704 -2.4320 5.8741 24 6 2.6072 -1.4214 7.6434 25 7 1.9229 -0.4061 8.1268 26 14 3.4418 -2.6228 8.8051 27 1 4.1428 -3.6679 8.0167 28 1 4.4255 -1.8952 9.6467 29 1 2.4211 -3.2599 9.6755 30 1 -0.3633 -1.0275 0.0181 31 1 -0.3634 0.5296 0.8807 32 1 -0.3633 0.4980 -0.8990 33 1 2.6738 1.1133 -2.0572 34 1 1.9871 -2.8662 -5.4554 35 1 2.6464 -1.2812 -7.2184 36 1 3.4889 -2.4060 -1.2833 37 1 4.1664 -0.8626 -0.6642 38 1 3.6779 -2.0298 1.3885 39 1 2.1961 -2.7708 0.7125 40 1 2.0081 -2.2077 3.5193 41 1 3.4780 -1.2040 3.4989 42 1 1.8517 -0.2820 9.0862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122941088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:16 Heat of formation + Delta-G solvation = 59.969151 kcal Electronic energy + Delta-G solvation = -26694.711680 eV Core-core repulsion = 22801.844790 eV Total energy + Delta-G solvation = -3892.866889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77466 -40.26105 -37.97859 -37.12804 -35.94985 -34.36638 -32.46116 -32.27205 -31.53577 -30.22746 -28.51528 -26.37120 -25.82918 -25.51978 -23.80292 -22.97027 -21.48065 -20.09919 -19.41569 -18.54813 -18.25375 -17.66282 -16.73213 -16.23458 -15.97299 -15.88514 -15.23522 -14.98354 -14.83304 -14.55851 -14.17399 -14.07777 -13.97153 -13.73575 -13.53462 -13.28099 -13.18228 -12.96278 -12.72189 -12.61479 -12.47236 -12.15747 -12.07965 -11.87888 -11.73328 -11.48563 -11.10511 -11.07263 -11.04175 -10.78618 -10.69642 -9.84493 -9.81035 -9.44947 -9.10461 -8.66849 -8.55696 -8.27105 -6.54077 -6.24892 -3.95858 -0.09179 0.64305 2.01043 2.16978 2.37396 2.83376 2.97829 3.02452 3.19312 3.23244 3.28686 3.32142 3.52456 3.59230 3.92188 4.00323 4.16755 4.21044 4.26589 4.52214 4.64539 4.69405 4.85612 4.88358 4.97153 5.10460 5.13706 5.28478 5.39767 5.44647 5.52035 5.56965 5.60471 5.73409 5.82029 5.85707 6.07794 6.13644 6.22106 6.30252 6.39784 6.77709 6.98924 7.22740 7.54571 7.57163 8.32204 8.47042 9.20569 10.82560 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.024042 B = 0.001989 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.331637 B =14071.103774 C =14487.447684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.076 0.924 4 C 0.143 3.857 5 H 0.116 0.884 6 N -0.690 5.690 7 C 0.411 3.589 8 N -0.491 5.491 9 C 0.143 3.857 10 C -0.012 4.012 11 N -0.365 5.365 12 C 0.065 3.935 13 C 0.265 3.735 14 N -0.385 5.385 15 C -0.143 4.143 16 C 0.102 3.898 17 N -0.622 5.622 18 C 0.551 3.449 19 O -0.510 6.510 20 C -0.147 4.147 21 S -0.060 6.060 22 C -0.534 4.534 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.414 0.586 34 H 0.181 0.819 35 H 0.179 0.821 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.244 -7.015 -29.662 30.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 H 0.094 0.906 4 C 0.037 3.963 5 H 0.134 0.866 6 N -0.319 5.319 7 C 0.169 3.831 8 N -0.214 5.214 9 C -0.022 4.022 10 C -0.178 4.178 11 N -0.080 5.080 12 C -0.083 4.083 13 C -0.052 4.052 14 N -0.062 5.062 15 C -0.183 4.183 16 C -0.022 4.022 17 N -0.360 5.360 18 C 0.340 3.660 19 O -0.384 6.384 20 C -0.297 4.297 21 S 0.166 5.834 22 C -0.683 4.683 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.502 5.502 26 Si 0.746 3.254 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.205 1.205 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.253 0.747 34 H 0.198 0.802 35 H 0.196 0.804 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.528 -3.870 -28.392 28.659 hybrid contribution 1.360 -2.041 0.310 2.472 sum 1.889 -5.911 -28.081 28.759 Atomic orbital electron populations 1.22143 0.93785 1.02811 1.03289 1.21546 0.95335 0.96269 0.84156 0.90576 1.22217 0.97417 0.90648 0.85974 0.86602 1.44653 1.70504 1.14478 1.02218 1.18945 0.88833 0.89515 0.85821 1.68232 1.19089 1.13211 1.20822 1.23943 0.89609 1.01386 0.87265 1.23481 1.03406 0.88878 1.02039 1.68121 1.06320 1.17246 1.16312 1.16449 1.12864 0.88653 0.90331 1.24722 0.94162 0.91713 0.94631 1.81340 1.08162 1.10231 1.06492 1.23232 0.97884 1.01545 0.95598 1.22297 0.95941 0.89220 0.94713 1.48512 1.54018 1.28949 1.04523 1.20054 0.79776 0.85011 0.81191 1.90705 1.38372 1.26913 1.82399 1.23511 1.03643 1.02662 0.99893 1.85421 1.69454 1.37954 0.90543 1.22889 1.38123 1.14190 0.93067 0.90859 1.25001 0.95254 0.96000 0.97379 1.70027 1.38500 1.28147 1.13556 0.86110 0.79028 0.80222 0.80088 1.19603 1.20562 1.20540 0.92058 0.90272 0.91985 0.74738 0.80171 0.80417 0.88982 0.90191 0.89786 0.90809 0.89182 0.89282 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.10 37.16 0.34 -1.47 16 2 C 0.13 1.43 3.20 -66.95 -0.21 1.22 16 3 H 0.08 0.89 7.70 -51.93 -0.40 0.49 16 4 C 0.14 1.11 2.82 -66.10 -0.19 0.92 16 5 H 0.12 0.87 7.31 -51.93 -0.38 0.49 16 6 N -0.69 -5.04 5.26 -51.85 -0.27 -5.32 16 7 C 0.41 3.00 7.48 -154.78 -1.16 1.84 16 8 N -0.49 -3.04 9.38 -11.97 -0.11 -3.15 16 9 C 0.14 0.49 11.22 -17.28 -0.19 0.29 16 10 C -0.01 -0.05 11.21 -17.40 -0.19 -0.24 16 11 N -0.36 -2.74 10.42 -10.74 -0.11 -2.85 16 12 C 0.06 0.53 6.61 -84.55 -0.56 -0.03 16 13 C 0.26 2.59 14.32 -22.48 -0.32 2.27 16 14 N -0.38 -4.50 18.54 41.84 0.78 -3.73 16 15 C -0.14 -1.05 6.77 -24.58 -0.17 -1.22 16 16 C 0.10 0.96 6.69 -2.53 -0.02 0.94 16 17 N -0.62 -8.18 3.07 -163.02 -0.50 -8.68 16 18 C 0.55 10.09 7.66 -10.98 -0.08 10.00 16 19 O -0.51 -11.28 14.91 5.56 0.08 -11.19 16 20 C -0.15 -2.90 5.16 36.01 0.19 -2.71 16 21 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 22 C -0.53 -15.01 9.50 30.94 0.29 -14.72 16 23 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 24 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 25 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 26 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.14 6.91 -51.93 -0.36 0.78 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.41 3.07 7.18 -40.82 -0.29 2.78 16 34 H 0.18 -0.07 8.06 -52.49 -0.42 -0.49 16 35 H 0.18 0.11 8.06 -52.49 -0.42 -0.31 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.79 7.48 -51.93 -0.39 0.40 16 39 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 41 H 0.09 1.63 7.85 -51.92 -0.41 1.23 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -36.01 379.00 -8.46 -44.47 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.15 Total: -1.43 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.37 Total: -0.95 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.51 Total: -48.95 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.01 -8.46 -44.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122941088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.436 kcal (2) G-P(sol) polarization free energy of solvation -36.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds