Wall clock time and date at job start Wed Apr 1 2020 05:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.87342 * 2 1 4 4 C 1.54322 * 109.88369 * 238.98613 * 2 1 3 5 5 H 1.09002 * 110.71963 * 336.59761 * 4 2 1 6 6 N 1.46502 * 110.72235 * 99.69494 * 4 2 1 7 7 C 1.38405 * 120.00225 * 202.55813 * 6 4 2 8 8 N 1.32730 * 120.17011 * 359.72418 * 7 6 4 9 9 C 1.32114 * 119.99738 * 179.71889 * 8 7 6 10 10 C 1.38650 * 120.35184 * 0.55727 * 9 8 7 11 11 N 1.31842 * 120.35165 * 359.71981 * 10 9 8 12 12 C 1.33037 * 119.99176 * 0.02562 * 11 10 9 13 13 C 1.43193 * 120.17409 * 179.97438 * 12 11 10 14 14 N 5.44372 * 110.93978 * 307.82179 * 2 1 3 15 15 C 1.55157 * 102.94206 * 218.23242 * 4 2 1 16 16 C 1.54909 * 101.57958 * 35.50243 * 15 4 2 17 17 N 1.47018 * 110.01041 * 121.09752 * 2 1 3 18 18 C 1.34778 * 125.65052 * 298.47272 * 17 2 1 19 19 O 1.21277 * 119.99723 * 359.97438 * 18 17 2 20 20 C 1.50700 * 120.00165 * 180.02562 * 18 17 2 21 21 S 1.80998 * 109.46951 * 179.97438 * 20 18 17 22 22 C 1.76207 * 99.99710 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99820 * 359.97438 * 22 21 20 24 24 C 1.38797 * 120.00024 * 179.97438 * 22 21 20 25 25 N 1.31632 * 120.00051 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00225 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47105 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.47151 * 119.99805 * 26 24 22 29 29 H 1.48495 * 109.47196 * 239.99876 * 26 24 22 30 30 H 1.09000 * 109.47137 * 181.00854 * 1 2 3 31 31 H 1.08997 * 109.47286 * 301.01993 * 1 2 3 32 32 H 1.09002 * 109.47086 * 61.01582 * 1 2 3 33 33 H 0.97000 * 119.99643 * 22.55598 * 6 4 2 34 34 H 1.07997 * 119.82710 * 180.27826 * 9 8 7 35 35 H 1.08002 * 119.82276 * 179.73918 * 10 9 8 36 36 H 1.09000 * 111.00495 * 153.57626 * 15 4 2 37 37 H 1.08997 * 111.00429 * 277.43204 * 15 4 2 38 38 H 1.08998 * 110.36917 * 204.14700 * 16 15 4 39 39 H 1.09009 * 110.46209 * 81.87337 * 16 15 4 40 40 H 1.09003 * 109.46748 * 299.99694 * 20 18 17 41 41 H 1.08998 * 109.47064 * 59.99584 * 20 18 17 42 42 H 0.97001 * 120.00185 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 1 1.3062 -1.4456 -1.6187 6 7 2.4482 0.1991 -2.2902 7 6 2.4979 -0.2107 -3.6113 8 7 2.1951 -1.4623 -3.9332 9 6 2.2383 -1.8484 -5.1960 10 6 2.6100 -0.9553 -6.1893 11 7 2.9188 0.2896 -5.8844 12 6 2.8751 0.6945 -4.6180 13 6 3.2102 2.0457 -4.2824 14 7 3.4755 3.1177 -4.0161 15 6 3.2901 -1.5100 -0.6954 16 6 2.8196 -1.8769 0.7342 17 7 2.0331 -0.7135 1.1829 18 6 1.8113 -0.3626 2.4652 19 8 1.1456 0.6189 2.7188 20 6 2.3914 -1.1893 3.5837 21 16 1.9207 -0.4663 5.1749 22 6 2.7086 -1.5993 6.2707 23 1 3.2704 -2.4320 5.8741 24 6 2.6072 -1.4214 7.6434 25 7 1.9229 -0.4061 8.1268 26 14 3.4418 -2.6228 8.8051 27 1 4.1428 -3.6679 8.0167 28 1 4.4255 -1.8952 9.6467 29 1 2.4211 -3.2599 9.6755 30 1 -0.3633 -1.0275 0.0181 31 1 -0.3634 0.5296 0.8807 32 1 -0.3633 0.4980 -0.8990 33 1 2.6738 1.1133 -2.0572 34 1 1.9871 -2.8662 -5.4554 35 1 2.6464 -1.2812 -7.2184 36 1 3.4889 -2.4060 -1.2833 37 1 4.1664 -0.8626 -0.6642 38 1 3.6779 -2.0298 1.3885 39 1 2.1961 -2.7708 0.7125 40 1 2.0081 -2.2077 3.5193 41 1 3.4780 -1.2040 3.4989 42 1 1.8517 -0.2820 9.0862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122941088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:15 Heat of formation + Delta-G solvation = 34.450317 kcal Electronic energy + Delta-G solvation = -26695.818259 eV Core-core repulsion = 22801.844790 eV Total energy + Delta-G solvation = -3893.973469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.23849 -41.29945 -39.07889 -37.87015 -36.69576 -34.87249 -34.59503 -33.22817 -32.33054 -31.09438 -29.74948 -27.67114 -26.89685 -26.48797 -24.34113 -23.98864 -22.18716 -20.72070 -20.50775 -19.57856 -19.15318 -18.80693 -17.90326 -17.24307 -16.89212 -16.60260 -16.49114 -16.21835 -16.02332 -15.67798 -15.23440 -14.98910 -14.84646 -14.56968 -14.44981 -14.25436 -14.10056 -14.05988 -13.81110 -13.67288 -13.41269 -13.16459 -13.10345 -12.92082 -12.82864 -12.62450 -12.60387 -12.50693 -12.12886 -11.84143 -11.70949 -11.24844 -11.16788 -10.92136 -10.28425 -10.21827 -9.78091 -9.06808 -8.68780 -8.35747 -6.14178 -0.53343 0.24314 1.19155 1.32579 1.40997 1.41237 1.53742 1.55343 1.68954 1.76940 2.12129 2.26269 2.45893 2.84754 2.98658 3.10675 3.20837 3.33863 3.47833 3.51126 3.83424 3.85048 3.90134 4.12972 4.16528 4.18661 4.25892 4.27721 4.44426 4.51745 4.55018 4.66801 4.74173 4.88261 4.98571 5.07106 5.16870 5.28614 5.36614 5.41267 5.73770 5.79607 6.17046 6.19104 6.33467 6.46694 6.79834 7.05647 7.09602 8.73695 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.024042 B = 0.001989 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.331637 B =14071.103774 C =14487.447684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.126 3.874 3 H 0.062 0.938 4 C 0.161 3.839 5 H 0.129 0.871 6 N -0.694 5.694 7 C 0.411 3.589 8 N -0.500 5.500 9 C 0.162 3.838 10 C 0.002 3.998 11 N -0.393 5.393 12 C 0.035 3.965 13 C 0.284 3.716 14 N -0.437 5.437 15 C -0.131 4.131 16 C 0.092 3.908 17 N -0.612 5.612 18 C 0.548 3.452 19 O -0.561 6.561 20 C -0.119 4.119 21 S -0.153 6.153 22 C -0.543 4.543 23 H 0.084 0.916 24 C 0.012 3.988 25 N -0.912 5.912 26 Si 1.000 3.000 27 H -0.255 1.255 28 H -0.275 1.275 29 H -0.274 1.274 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.411 0.589 34 H 0.228 0.772 35 H 0.216 0.784 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -11.180 -32.411 34.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.080 0.920 4 C 0.055 3.945 5 H 0.147 0.853 6 N -0.323 5.323 7 C 0.170 3.830 8 N -0.222 5.222 9 C -0.004 4.004 10 C -0.166 4.166 11 N -0.109 5.109 12 C -0.110 4.110 13 C -0.032 4.032 14 N -0.116 5.116 15 C -0.170 4.170 16 C -0.030 4.030 17 N -0.347 5.347 18 C 0.337 3.663 19 O -0.439 6.439 20 C -0.270 4.270 21 S 0.074 5.926 22 C -0.691 4.691 23 H 0.102 0.898 24 C -0.193 4.193 25 N -0.549 5.549 26 Si 0.821 3.179 27 H -0.178 1.178 28 H -0.201 1.201 29 H -0.199 1.199 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.248 0.752 34 H 0.244 0.756 35 H 0.232 0.768 36 H 0.136 0.864 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.528 -8.034 -31.182 32.236 hybrid contribution 1.019 -0.896 0.873 1.613 sum 2.547 -8.930 -30.309 31.699 Atomic orbital electron populations 1.22061 0.93929 1.03046 1.02337 1.21711 0.95289 0.96074 0.84732 0.91960 1.22020 0.97818 0.90102 0.84522 0.85315 1.44590 1.70953 1.14287 1.02425 1.18872 0.88948 0.89956 0.85220 1.68338 1.19295 1.12233 1.22370 1.24760 0.86735 1.03000 0.85945 1.24227 1.00855 0.87545 1.03990 1.68112 1.07494 1.19251 1.15997 1.16330 1.15574 0.87938 0.91140 1.25132 0.92775 0.91992 0.93300 1.81335 1.10399 1.11740 1.08084 1.23201 0.97198 1.02349 0.94222 1.22676 0.96011 0.88348 0.95973 1.48393 1.53108 1.29827 1.03408 1.19766 0.79587 0.84337 0.82632 1.90690 1.40759 1.28943 1.83490 1.23303 1.04629 1.02989 0.96102 1.85624 1.70657 1.40367 0.95928 1.23218 1.38024 1.14228 0.93588 0.89783 1.26153 0.95808 0.97960 0.99386 1.70195 1.40213 1.30389 1.14057 0.84891 0.77858 0.77716 0.77394 1.17815 1.20081 1.19918 0.91021 0.94186 0.90054 0.75156 0.75616 0.76802 0.86382 0.90655 0.89449 0.88600 0.87236 0.87578 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 9.10 71.98 0.66 -2.80 16 2 C 0.13 2.68 3.20 45.34 0.15 2.83 16 3 H 0.06 1.52 7.70 -2.39 -0.02 1.50 16 4 C 0.16 2.12 2.82 46.18 0.13 2.25 16 5 H 0.13 1.45 7.31 -2.39 -0.02 1.43 16 6 N -0.69 -9.22 5.26 -317.95 -1.67 -10.89 16 7 C 0.41 5.12 7.48 133.51 1.00 6.12 16 8 N -0.50 -4.20 9.38 -191.79 -1.80 -6.00 16 9 C 0.16 0.28 11.22 84.75 0.95 1.23 16 10 C 0.00 0.01 11.21 84.79 0.95 0.96 16 11 N -0.39 -5.09 10.42 -187.88 -1.96 -7.05 16 12 C 0.03 0.53 6.61 40.77 0.27 0.80 16 13 C 0.28 5.73 14.32 88.33 1.27 7.00 16 14 N -0.44 -10.88 18.54 19.00 0.35 -10.52 16 15 C -0.13 -1.50 6.77 31.99 0.22 -1.28 16 16 C 0.09 1.47 6.69 86.85 0.58 2.05 16 17 N -0.61 -15.62 3.07 -788.05 -2.42 -18.04 16 18 C 0.55 20.44 7.66 87.66 0.67 21.11 16 19 O -0.56 -26.17 14.91 -3.02 -0.05 -26.22 16 20 C -0.12 -4.70 5.16 71.24 0.37 -4.34 16 21 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 22 C -0.54 -30.76 9.50 67.95 0.65 -30.12 16 23 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 24 C 0.01 0.65 5.49 84.86 0.47 1.12 16 25 N -0.91 -56.06 13.22 21.65 0.29 -55.77 16 26 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 27 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 28 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 29 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.04 1.21 6.91 -2.39 -0.02 1.20 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.41 6.13 7.18 -92.71 -0.67 5.46 16 34 H 0.23 -1.74 8.06 -2.91 -0.02 -1.76 16 35 H 0.22 -0.88 8.06 -2.91 -0.02 -0.90 16 36 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 1.39 7.48 -2.39 -0.02 1.37 16 39 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 41 H 0.11 3.80 7.85 -2.40 -0.02 3.78 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -84.68 379.00 2.33 -82.34 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.41 Total: 9.54 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 8.31 Total: 6.94 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -7.21 Total: -108.28 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.05 Total: -26.22 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -84.68 2.33 -82.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122941088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.795 kcal (2) G-P(sol) polarization free energy of solvation -84.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds