Wall clock time and date at job start Wed Apr 1 2020 05:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 110.00321 * 2 1 4 4 C 1.54333 * 109.99004 * 238.95830 * 2 1 3 5 5 H 1.08994 * 110.84853 * 100.19898 * 4 2 1 6 6 N 1.46504 * 110.66868 * 337.05432 * 4 2 1 7 7 C 1.31903 * 120.00197 * 124.95488 * 6 4 2 8 8 C 1.46887 * 120.57044 * 179.71736 * 7 6 4 9 9 C 1.34956 * 118.30134 * 179.78251 * 8 7 6 10 10 N 1.36654 * 119.29123 * 0.47638 * 9 8 7 11 11 H 0.96994 * 119.42972 * 179.74547 * 10 9 8 12 12 C 1.36218 * 121.13192 * 359.76851 * 10 9 8 13 13 C 1.43202 * 119.06433 * 179.97438 * 12 10 9 14 14 N 6.72719 * 92.61873 * 280.13611 * 2 1 3 15 15 N 1.31031 * 121.86666 * 359.97322 * 12 10 9 16 16 C 1.55156 * 103.02551 * 218.66920 * 4 2 1 17 17 C 1.54911 * 101.57846 * 35.30562 * 16 4 2 18 18 N 1.47028 * 109.87931 * 121.09976 * 2 1 3 19 19 C 1.34777 * 125.64354 * 298.38503 * 18 2 1 20 20 O 1.21283 * 120.00463 * 359.72563 * 19 18 2 21 21 C 1.50700 * 119.99675 * 179.44686 * 19 18 2 22 22 S 1.80997 * 109.47151 * 180.27780 * 21 19 18 23 23 C 1.76196 * 100.00314 * 179.97438 * 22 21 19 24 24 H 1.08005 * 120.00018 * 0.02562 * 23 22 21 25 25 C 1.38799 * 120.00626 * 179.97438 * 23 22 21 26 26 N 1.31633 * 119.99674 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00584 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.46793 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47282 * 119.99523 * 27 25 23 30 30 H 1.48500 * 109.47237 * 240.00020 * 27 25 23 31 31 H 1.09004 * 109.46854 * 300.35671 * 1 2 3 32 32 H 1.08997 * 109.46778 * 60.35445 * 1 2 3 33 33 H 1.08997 * 109.47185 * 180.35990 * 1 2 3 34 34 H 1.07995 * 120.84888 * 0.02665 * 8 7 6 35 35 H 1.08004 * 120.34793 * 180.22032 * 9 8 7 36 36 H 1.09001 * 111.00218 * 277.24015 * 16 4 2 37 37 H 1.08997 * 111.03976 * 153.39772 * 16 4 2 38 38 H 1.08998 * 110.36692 * 204.15432 * 17 16 4 39 39 H 1.08998 * 110.45932 * 81.88076 * 17 16 4 40 40 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 41 41 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 42 42 H 0.97003 * 120.00297 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2426 5 1 2.3597 -0.0452 -2.0191 6 7 1.0482 -1.6789 -1.7532 7 6 0.6600 -1.6057 -3.0116 8 6 -0.3467 -2.5368 -3.5382 9 6 -0.7137 -2.4180 -4.8315 10 7 -0.1351 -1.4511 -5.6046 11 1 -0.3946 -1.3664 -6.5353 12 6 0.8002 -0.6045 -5.0906 13 6 1.3783 0.3924 -5.9407 14 7 1.8374 1.1827 -6.6153 15 7 1.1858 -0.6764 -3.8403 16 6 3.2863 -1.5185 -0.6915 17 6 2.8099 -1.8826 0.7369 18 7 2.0300 -0.7142 1.1839 19 6 1.8074 -0.3621 2.4657 20 8 1.1476 0.6238 2.7180 21 6 2.3732 -1.1969 3.5855 22 16 1.8976 -0.4752 5.1758 23 6 2.6687 -1.6177 6.2733 24 1 3.2272 -2.4534 5.8779 25 6 2.5594 -1.4434 7.6459 26 7 1.8800 -0.4241 8.1278 27 14 3.3775 -2.6543 8.8094 28 1 4.0752 -3.7027 8.0224 29 1 4.3608 -1.9365 9.6598 30 1 2.3465 -3.2867 9.6710 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 -0.3633 -1.0276 0.0065 34 1 -0.7850 -3.2944 -2.9056 35 1 -1.4537 -3.0829 -5.2520 36 1 4.1669 -0.8770 -0.6579 37 1 3.4813 -2.4157 -1.2789 38 1 3.6655 -2.0413 1.3933 39 1 2.1805 -2.7722 0.7134 40 1 1.9819 -2.2119 3.5156 41 1 3.4602 -1.2204 3.5079 42 1 1.8033 -0.3024 9.0871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122941097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:48 Heat of formation + Delta-G solvation = 56.895454 kcal Electronic energy + Delta-G solvation = -26620.879428 eV Core-core repulsion = 22727.879253 eV Total energy + Delta-G solvation = -3893.000175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.94201 -41.17248 -38.84459 -37.99106 -36.47301 -34.58932 -34.25189 -33.26503 -32.36118 -31.22662 -29.67857 -27.66235 -26.80649 -26.71272 -24.28858 -23.83111 -21.63212 -20.89598 -20.25568 -19.45331 -19.19373 -18.53916 -18.19233 -17.44416 -16.88730 -16.60976 -16.52184 -16.35155 -15.64310 -15.39246 -15.22596 -14.77339 -14.73397 -14.53023 -14.44432 -14.36132 -14.19577 -14.01748 -13.86562 -13.71064 -13.24812 -13.15398 -12.92388 -12.89080 -12.77111 -12.59046 -12.48043 -12.09639 -11.81070 -11.70673 -11.32240 -11.16511 -11.15766 -10.87485 -10.28393 -10.09410 -9.68166 -8.68168 -8.57720 -8.34653 -6.13455 -0.56115 0.50598 0.90281 1.23888 1.39312 1.41739 1.44596 1.57242 1.59429 1.68548 2.11167 2.27237 2.54994 2.71833 2.99109 3.21341 3.25337 3.54727 3.61302 3.67553 4.00541 4.04920 4.17253 4.22539 4.26446 4.27525 4.36965 4.44006 4.51534 4.65158 4.71450 4.82748 4.89577 4.99721 5.01989 5.03172 5.18898 5.33012 5.41667 5.46884 5.52266 5.82326 6.11277 6.20109 6.46021 6.71619 7.06008 7.07470 7.14912 8.75092 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.027016 B = 0.001924 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.157293 B =14546.349497 C =14720.088036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.144 3.856 3 H 0.057 0.943 4 C 0.079 3.921 5 H 0.082 0.918 6 N -0.548 5.548 7 C 0.345 3.655 8 C -0.216 4.216 9 C 0.156 3.844 10 N -0.595 5.595 11 H 0.447 0.553 12 C 0.509 3.491 13 C 0.276 3.724 14 N -0.365 5.365 15 N -0.558 5.558 16 C -0.108 4.108 17 C 0.104 3.896 18 N -0.608 5.608 19 C 0.546 3.454 20 O -0.565 6.565 21 C -0.118 4.118 22 S -0.149 6.149 23 C -0.545 4.545 24 H 0.082 0.918 25 C 0.012 3.988 26 N -0.912 5.912 27 Si 1.002 2.998 28 H -0.256 1.256 29 H -0.273 1.273 30 H -0.272 1.272 31 H 0.030 0.970 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.165 0.835 35 H 0.239 0.761 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.297 -9.963 -38.069 39.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.040 3.960 3 H 0.075 0.925 4 C -0.034 4.034 5 H 0.100 0.900 6 N -0.270 5.270 7 C 0.071 3.929 8 C -0.246 4.246 9 C 0.031 3.969 10 N -0.218 5.218 11 H 0.288 0.712 12 C 0.230 3.770 13 C -0.045 4.045 14 N -0.043 5.043 15 N -0.288 5.288 16 C -0.146 4.146 17 C -0.018 4.018 18 N -0.343 5.343 19 C 0.334 3.666 20 O -0.444 6.444 21 C -0.269 4.269 22 S 0.078 5.922 23 C -0.693 4.693 24 H 0.100 0.900 25 C -0.193 4.193 26 N -0.548 5.548 27 Si 0.823 3.177 28 H -0.180 1.180 29 H -0.198 1.198 30 H -0.198 1.198 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.183 0.817 35 H 0.255 0.745 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.141 -7.267 -36.983 37.917 hybrid contribution 0.641 -1.246 0.162 1.411 sum -3.500 -8.514 -36.821 37.954 Atomic orbital electron populations 1.21721 0.94909 1.02120 1.00226 1.21639 0.94954 0.94920 0.84458 0.92485 1.22265 0.92460 0.94595 0.94046 0.90040 1.73500 1.17414 1.26336 1.09760 1.21707 0.92475 0.89240 0.89471 1.22365 1.01907 1.03756 0.96590 1.22723 0.95156 0.89175 0.89891 1.42122 1.34664 1.28274 1.16698 0.71188 1.16499 0.86653 0.86077 0.87732 1.24335 0.94403 0.93086 0.92642 1.81412 1.06030 1.07960 1.08902 1.69217 1.30722 1.26864 1.01958 1.22764 0.96290 1.01380 0.94151 1.22454 0.95187 0.87974 0.96222 1.48525 1.52894 1.29176 1.03702 1.19775 0.79620 0.84549 0.82678 1.90658 1.41155 1.28996 1.83607 1.23294 1.04600 1.02626 0.96342 1.85562 1.71349 1.39664 0.95610 1.23225 1.38588 1.13802 0.93667 0.89981 1.26176 0.95709 0.98104 0.99291 1.70201 1.40226 1.30277 1.14117 0.84862 0.77900 0.77608 0.77288 1.18006 1.19810 1.19763 0.95077 0.92074 0.91554 0.81718 0.74474 0.89598 0.88452 0.89818 0.90587 0.87882 0.87668 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 8.53 71.98 0.61 -3.68 16 2 C 0.14 4.56 3.43 45.34 0.16 4.72 16 3 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 4 C 0.08 1.94 3.48 46.18 0.16 2.10 16 5 H 0.08 2.01 6.80 -2.39 -0.02 1.99 16 6 N -0.55 -12.45 8.55 -315.07 -2.70 -15.14 16 7 C 0.35 5.69 7.60 136.53 1.04 6.72 16 8 C -0.22 -1.45 10.30 23.78 0.24 -1.20 16 9 C 0.16 -0.58 11.28 83.19 0.94 0.36 16 10 N -0.60 1.91 5.31 -191.99 -1.02 0.89 16 11 H 0.45 -4.97 8.73 -92.71 -0.81 -5.78 16 12 C 0.51 3.32 7.48 135.43 1.01 4.33 16 13 C 0.28 2.39 15.62 88.33 1.38 3.77 16 14 N -0.36 -4.89 18.54 19.00 0.35 -4.54 16 15 N -0.56 -8.35 8.77 -186.87 -1.64 -9.99 16 16 C -0.11 -2.31 6.77 31.99 0.22 -2.09 16 17 C 0.10 2.71 6.67 86.86 0.58 3.28 16 18 N -0.61 -21.07 3.06 -788.04 -2.41 -23.49 16 19 C 0.55 24.08 7.66 87.66 0.67 24.75 16 20 O -0.57 -29.79 14.91 -3.04 -0.05 -29.83 16 21 C -0.12 -5.30 5.16 71.24 0.37 -4.94 16 22 S -0.15 -8.83 20.57 -56.49 -1.16 -10.00 16 23 C -0.55 -32.54 9.50 67.95 0.65 -31.90 16 24 H 0.08 4.57 7.80 -2.91 -0.02 4.55 16 25 C 0.01 0.69 5.49 84.86 0.47 1.16 16 26 N -0.91 -57.75 13.22 21.65 0.29 -57.46 16 27 Si 1.00 45.02 29.55 68.60 2.03 47.05 16 28 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 29 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 30 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 31 H 0.03 1.21 6.89 -2.39 -0.02 1.19 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 2.17 7.36 -2.39 -0.02 2.16 16 34 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 35 H 0.24 -3.43 8.06 -2.91 -0.02 -3.45 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 2.02 7.49 -2.39 -0.02 2.01 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.10 4.31 8.14 -2.39 -0.02 4.29 16 41 H 0.11 4.33 7.85 -2.40 -0.02 4.31 16 42 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -93.50 378.99 2.45 -91.05 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 0.27 Total: 4.06 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 8.49 Total: 7.39 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -7.13 Total: -109.72 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.05 Total: -29.83 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -10.00 kcal Total: -93.50 2.45 -91.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122941097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.946 kcal (2) G-P(sol) polarization free energy of solvation -93.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds