Wall clock time and date at job start Wed Apr 1 2020 05:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.87424 * 2 1 4 4 C 1.54329 * 109.88003 * 121.01862 * 2 1 3 5 5 H 1.08996 * 110.72223 * 23.22727 * 4 2 1 6 6 N 1.46495 * 110.71903 * 260.12277 * 4 2 1 7 7 C 1.38977 * 119.99690 * 155.00311 * 6 4 2 8 8 C 1.39606 * 120.02739 * 0.02562 * 7 6 4 9 9 N 1.31945 * 120.12776 * 179.72057 * 8 7 6 10 10 C 1.32164 * 120.18033 * 0.51978 * 9 8 7 11 11 C 1.39373 * 120.04921 * 359.47907 * 10 9 8 12 12 C 1.43204 * 120.06437 * 180.27534 * 11 10 9 13 13 N 8.16221 * 104.03078 * 75.92736 * 2 1 3 14 14 N 1.32384 * 120.02242 * 180.02562 * 7 6 4 15 15 C 1.55165 * 102.93997 * 141.76164 * 4 2 1 16 16 C 1.54909 * 101.58167 * 324.49739 * 15 4 2 17 17 N 1.47026 * 110.00832 * 238.90098 * 2 1 3 18 18 C 1.34776 * 125.64362 * 61.60959 * 17 2 1 19 19 O 1.21278 * 120.00312 * 359.97438 * 18 17 2 20 20 C 1.50704 * 119.99583 * 179.97438 * 18 17 2 21 21 S 1.81004 * 109.46875 * 179.97438 * 20 18 17 22 22 C 1.76198 * 99.99808 * 180.02562 * 21 20 18 23 23 H 1.08007 * 120.00035 * 359.97438 * 22 21 20 24 24 C 1.38802 * 120.00168 * 179.97438 * 22 21 20 25 25 N 1.31628 * 120.00060 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99676 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47321 * 89.99680 * 26 24 22 28 28 H 1.48501 * 109.46978 * 210.00143 * 26 24 22 29 29 H 1.48508 * 109.47127 * 329.99526 * 26 24 22 30 30 H 1.09008 * 109.47016 * 298.98080 * 1 2 3 31 31 H 1.08997 * 109.47358 * 58.97925 * 1 2 3 32 32 H 1.08999 * 109.47619 * 178.98488 * 1 2 3 33 33 H 0.97000 * 120.00595 * 335.00199 * 6 4 2 34 34 H 1.07999 * 119.93916 * 359.97438 * 8 7 6 35 35 H 1.08002 * 119.97803 * 179.76648 * 10 9 8 36 36 H 1.09003 * 111.00203 * 82.57212 * 15 4 2 37 37 H 1.08990 * 111.00261 * 206.42154 * 15 4 2 38 38 H 1.08997 * 110.36890 * 278.17024 * 16 15 4 39 39 H 1.08999 * 110.36672 * 155.84583 * 16 15 4 40 40 H 1.08998 * 109.47411 * 299.99823 * 20 18 17 41 41 H 1.09007 * 109.46934 * 60.00060 * 20 18 17 42 42 H 0.97005 * 119.99566 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7479 1.2438 5 1 1.3049 -1.4435 1.6204 6 7 2.4521 0.1990 2.2886 7 6 2.4540 -0.1968 3.6208 8 6 2.0780 -1.4968 3.9639 9 7 2.0843 -1.8764 5.2276 10 6 2.4367 -1.0252 6.1752 11 6 2.8135 0.2744 5.8411 12 6 3.2010 1.1952 6.8671 13 7 3.5089 1.9254 7.6810 14 7 2.8124 0.6586 4.5654 15 6 3.2899 -1.5103 0.6953 16 6 2.8195 -1.8771 -0.7343 17 7 2.0330 -0.7136 -1.1830 18 6 1.8124 -0.3617 -2.4651 19 8 1.1473 0.6202 -2.7187 20 6 2.3923 -1.1886 -3.5838 21 16 1.9222 -0.4651 -5.1749 22 6 2.7096 -1.5982 -6.2707 23 1 3.2717 -2.4309 -5.8742 24 6 2.6076 -1.4207 -7.6436 25 7 3.1963 -2.2669 -8.4621 26 14 1.6362 0.0199 -8.3294 27 1 2.5358 1.1896 -8.4951 28 1 1.0613 -0.3531 -9.6468 29 1 0.5389 0.3684 -7.3913 30 1 -0.3633 0.4980 0.8991 31 1 -0.3634 0.5296 -0.8806 32 1 -0.3634 -1.0275 -0.0182 33 1 2.7138 1.1022 2.0507 34 1 1.7852 -2.1944 3.1932 35 1 2.4371 -1.3382 7.2089 36 1 4.1664 -0.8630 0.6642 37 1 3.4886 -2.4063 1.2832 38 1 2.1954 -2.7704 -0.7108 39 1 3.6777 -2.0299 -1.3886 40 1 3.4788 -1.2045 -3.4983 41 1 2.0078 -2.2066 -3.5201 42 1 3.1253 -2.1425 -9.4215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122987078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:32 Heat of formation + Delta-G solvation = 63.530326 kcal Electronic energy + Delta-G solvation = -26407.707348 eV Core-core repulsion = 22514.994882 eV Total energy + Delta-G solvation = -3892.712465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.82349 -40.43209 -38.17038 -37.22437 -35.95131 -34.60142 -32.49313 -32.29124 -31.58942 -30.34738 -28.68877 -26.48552 -25.81516 -25.66652 -24.14827 -23.11370 -21.79464 -19.96560 -19.35654 -18.61351 -17.75895 -17.63331 -17.25247 -16.67941 -16.15179 -15.96950 -15.54520 -15.16818 -14.97010 -14.35543 -14.32785 -14.03954 -13.98193 -13.87472 -13.69914 -13.43535 -13.24960 -13.13899 -12.84176 -12.77291 -12.57599 -12.23068 -12.19318 -12.03973 -11.86278 -11.63482 -11.32823 -11.23491 -11.05375 -10.69504 -10.66909 -9.91729 -9.89434 -9.61979 -9.05566 -8.81261 -8.58519 -8.56454 -6.98699 -6.33972 -4.06537 -0.22325 0.59481 1.70704 2.25519 2.28352 2.62370 2.80511 2.91512 3.11360 3.25334 3.29069 3.45825 3.52198 3.64416 3.75189 3.80600 4.01816 4.21670 4.28114 4.33206 4.44962 4.58780 4.67248 4.71446 4.78613 4.95540 5.05079 5.06807 5.13442 5.27145 5.35606 5.41893 5.46810 5.59586 5.66200 5.70349 5.91507 5.99035 6.02319 6.23508 6.62779 6.69329 6.86547 7.18603 7.38072 7.88855 8.28964 8.36122 9.12066 10.75118 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.031646 B = 0.001825 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.570842 B =15340.028644 C =15627.504888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 H 0.081 0.919 4 C 0.140 3.860 5 H 0.108 0.892 6 N -0.697 5.697 7 C 0.373 3.627 8 C 0.024 3.976 9 N -0.394 5.394 10 C 0.033 3.967 11 C 0.199 3.801 12 C 0.267 3.733 13 N -0.376 5.376 14 N -0.477 5.477 15 C -0.150 4.150 16 C 0.099 3.901 17 N -0.621 5.621 18 C 0.550 3.450 19 O -0.512 6.512 20 C -0.118 4.118 21 S -0.141 6.141 22 C -0.522 4.522 23 H 0.088 0.912 24 C 0.097 3.903 25 N -0.879 5.879 26 Si 0.856 3.144 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.413 0.587 34 H 0.176 0.824 35 H 0.177 0.823 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.732 -1.304 27.575 27.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.099 0.901 4 C 0.034 3.966 5 H 0.126 0.874 6 N -0.329 5.329 7 C 0.131 3.869 8 C -0.147 4.147 9 N -0.106 5.106 10 C -0.129 4.129 11 C 0.058 3.942 12 C -0.051 4.051 13 N -0.053 5.053 14 N -0.201 5.201 15 C -0.189 4.189 16 C -0.024 4.024 17 N -0.359 5.359 18 C 0.339 3.661 19 O -0.385 6.385 20 C -0.269 4.269 21 S 0.085 5.915 22 C -0.670 4.670 23 H 0.106 0.894 24 C -0.112 4.112 25 N -0.515 5.515 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.159 1.159 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.251 0.749 34 H 0.193 0.807 35 H 0.195 0.805 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.278 1.111 28.042 28.156 hybrid contribution 0.611 -0.514 -0.764 1.105 sum -1.667 0.597 27.277 27.335 Atomic orbital electron populations 1.22165 0.93713 1.02860 1.03492 1.21510 0.95276 0.96452 0.83662 0.90076 1.22252 0.97003 0.90813 0.86574 0.87407 1.44502 1.71549 1.16144 1.00732 1.19156 0.91293 0.90224 0.86242 1.23543 1.01880 0.94366 0.94916 1.68417 1.08303 1.33806 1.00048 1.23359 0.99944 0.88885 1.00746 1.16975 0.98984 0.90761 0.87524 1.24754 0.94487 0.93005 0.92863 1.81296 1.06635 1.07132 1.10194 1.67744 1.17896 1.35323 0.99186 1.23353 0.98216 1.01538 0.95822 1.22340 0.96119 0.89174 0.94778 1.48468 1.53978 1.28981 1.04498 1.20011 0.79805 0.84993 0.81303 1.90708 1.38473 1.26922 1.82439 1.23265 1.04052 1.02500 0.97062 1.84815 1.70713 1.40462 0.95497 1.22293 1.37865 1.13993 0.92840 0.89353 1.24705 0.94515 0.96191 0.95825 1.69935 1.42033 1.35939 1.03614 0.86745 0.82239 0.82762 0.80161 1.19204 1.19892 1.15938 0.91750 0.90271 0.92034 0.74917 0.80693 0.80549 0.89488 0.89002 0.90583 0.89485 0.88531 0.88405 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.10 37.16 0.34 -1.13 16 2 C 0.14 1.15 3.20 -66.95 -0.21 0.93 16 3 H 0.08 0.75 7.72 -51.93 -0.40 0.35 16 4 C 0.14 0.69 2.55 -66.09 -0.17 0.52 16 5 H 0.11 0.36 6.07 -51.93 -0.32 0.05 16 6 N -0.70 -3.63 5.35 -52.03 -0.28 -3.91 16 7 C 0.37 2.30 7.66 -154.88 -1.19 1.11 16 8 C 0.02 0.13 10.40 -16.99 -0.18 -0.05 16 9 N -0.39 -2.45 10.48 -12.53 -0.13 -2.58 16 10 C 0.03 0.18 10.91 -16.99 -0.19 -0.01 16 11 C 0.20 1.36 6.58 -84.91 -0.56 0.80 16 12 C 0.27 2.13 15.56 -22.47 -0.35 1.78 16 13 N -0.38 -3.75 18.54 41.84 0.78 -2.97 16 14 N -0.48 -3.69 10.46 -10.15 -0.11 -3.80 16 15 C -0.15 -0.71 6.77 -24.58 -0.17 -0.88 16 16 C 0.10 0.72 6.69 -2.53 -0.02 0.70 16 17 N -0.62 -6.79 3.07 -163.01 -0.50 -7.30 16 18 C 0.55 8.91 7.66 -10.98 -0.08 8.82 16 19 O -0.51 -10.15 14.92 5.56 0.08 -10.07 16 20 C -0.12 -2.13 5.16 36.01 0.19 -1.94 16 21 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 22 C -0.52 -14.55 10.04 30.94 0.31 -14.24 16 23 H 0.09 2.56 8.03 -52.48 -0.42 2.14 16 24 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 25 N -0.88 -25.89 13.97 55.49 0.78 -25.12 16 26 Si 0.86 21.25 27.74 -169.99 -4.71 16.53 16 27 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 30 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.08 0.98 6.91 -51.93 -0.36 0.62 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.41 2.24 8.49 -40.82 -0.35 1.89 16 34 H 0.18 0.50 6.18 -52.49 -0.32 0.18 16 35 H 0.18 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.66 7.48 -51.93 -0.39 0.27 16 40 H 0.10 1.62 7.85 -51.92 -0.41 1.21 16 41 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -34.68 375.76 -7.88 -42.56 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -5.08 Total: -2.66 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.37 Total: -0.93 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.53 Total: -45.67 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.53 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.68 -7.88 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122987078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.087 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds