Wall clock time and date at job start Wed Apr 1 2020 05:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.87424 * 2 1 4 4 C 1.54329 * 109.88003 * 121.01862 * 2 1 3 5 5 H 1.08996 * 110.72223 * 23.22727 * 4 2 1 6 6 N 1.46495 * 110.71903 * 260.12277 * 4 2 1 7 7 C 1.38977 * 119.99690 * 155.00311 * 6 4 2 8 8 C 1.39606 * 120.02739 * 0.02562 * 7 6 4 9 9 N 1.31945 * 120.12776 * 179.72057 * 8 7 6 10 10 C 1.32164 * 120.18033 * 0.51978 * 9 8 7 11 11 C 1.39373 * 120.04921 * 359.47907 * 10 9 8 12 12 C 1.43204 * 120.06437 * 180.27534 * 11 10 9 13 13 N 8.16221 * 104.03078 * 75.92736 * 2 1 3 14 14 N 1.32384 * 120.02242 * 180.02562 * 7 6 4 15 15 C 1.55165 * 102.93997 * 141.76164 * 4 2 1 16 16 C 1.54909 * 101.58167 * 324.49739 * 15 4 2 17 17 N 1.47026 * 110.00832 * 238.90098 * 2 1 3 18 18 C 1.34776 * 125.64362 * 61.60959 * 17 2 1 19 19 O 1.21278 * 120.00312 * 359.97438 * 18 17 2 20 20 C 1.50704 * 119.99583 * 179.97438 * 18 17 2 21 21 S 1.81004 * 109.46875 * 179.97438 * 20 18 17 22 22 C 1.76198 * 99.99808 * 180.02562 * 21 20 18 23 23 H 1.08007 * 120.00035 * 359.97438 * 22 21 20 24 24 C 1.38802 * 120.00168 * 179.97438 * 22 21 20 25 25 N 1.31628 * 120.00060 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99676 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47321 * 89.99680 * 26 24 22 28 28 H 1.48501 * 109.46978 * 210.00143 * 26 24 22 29 29 H 1.48508 * 109.47127 * 329.99526 * 26 24 22 30 30 H 1.09008 * 109.47016 * 298.98080 * 1 2 3 31 31 H 1.08997 * 109.47358 * 58.97925 * 1 2 3 32 32 H 1.08999 * 109.47619 * 178.98488 * 1 2 3 33 33 H 0.97000 * 120.00595 * 335.00199 * 6 4 2 34 34 H 1.07999 * 119.93916 * 359.97438 * 8 7 6 35 35 H 1.08002 * 119.97803 * 179.76648 * 10 9 8 36 36 H 1.09003 * 111.00203 * 82.57212 * 15 4 2 37 37 H 1.08990 * 111.00261 * 206.42154 * 15 4 2 38 38 H 1.08997 * 110.36890 * 278.17024 * 16 15 4 39 39 H 1.08999 * 110.36672 * 155.84583 * 16 15 4 40 40 H 1.08998 * 109.47411 * 299.99823 * 20 18 17 41 41 H 1.09007 * 109.46934 * 60.00060 * 20 18 17 42 42 H 0.97005 * 119.99566 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7479 1.2438 5 1 1.3049 -1.4435 1.6204 6 7 2.4521 0.1990 2.2886 7 6 2.4540 -0.1968 3.6208 8 6 2.0780 -1.4968 3.9639 9 7 2.0843 -1.8764 5.2276 10 6 2.4367 -1.0252 6.1752 11 6 2.8135 0.2744 5.8411 12 6 3.2010 1.1952 6.8671 13 7 3.5089 1.9254 7.6810 14 7 2.8124 0.6586 4.5654 15 6 3.2899 -1.5103 0.6953 16 6 2.8195 -1.8771 -0.7343 17 7 2.0330 -0.7136 -1.1830 18 6 1.8124 -0.3617 -2.4651 19 8 1.1473 0.6202 -2.7187 20 6 2.3923 -1.1886 -3.5838 21 16 1.9222 -0.4651 -5.1749 22 6 2.7096 -1.5982 -6.2707 23 1 3.2717 -2.4309 -5.8742 24 6 2.6076 -1.4207 -7.6436 25 7 3.1963 -2.2669 -8.4621 26 14 1.6362 0.0199 -8.3294 27 1 2.5358 1.1896 -8.4951 28 1 1.0613 -0.3531 -9.6468 29 1 0.5389 0.3684 -7.3913 30 1 -0.3633 0.4980 0.8991 31 1 -0.3634 0.5296 -0.8806 32 1 -0.3634 -1.0275 -0.0182 33 1 2.7138 1.1022 2.0507 34 1 1.7852 -2.1944 3.1932 35 1 2.4371 -1.3382 7.2089 36 1 4.1664 -0.8630 0.6642 37 1 3.4886 -2.4063 1.2832 38 1 2.1954 -2.7704 -0.7108 39 1 3.6777 -2.0299 -1.3886 40 1 3.4788 -1.2045 -3.4983 41 1 2.0078 -2.2066 -3.5201 42 1 3.1253 -2.1425 -9.4215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122987078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:31 Heat of formation + Delta-G solvation = 38.960915 kcal Electronic energy + Delta-G solvation = -26408.772757 eV Core-core repulsion = 22514.994882 eV Total energy + Delta-G solvation = -3893.777875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.27403 -41.29276 -39.10314 -37.89253 -36.55724 -35.12815 -34.66388 -33.10888 -32.20804 -31.10279 -29.76167 -27.83749 -26.96572 -26.38109 -24.60308 -23.94383 -22.34605 -20.58478 -20.39145 -19.47795 -19.12519 -18.24199 -17.94684 -17.48285 -17.11891 -16.88382 -16.48798 -16.43793 -16.12517 -15.65076 -15.17619 -14.91239 -14.87987 -14.65196 -14.53445 -14.28747 -14.10050 -14.02680 -13.91905 -13.57422 -13.32591 -13.31188 -13.05829 -12.98271 -12.79612 -12.67825 -12.63276 -12.43805 -12.16436 -11.87187 -11.79350 -11.17412 -11.16652 -10.91461 -10.51964 -10.33418 -9.73755 -8.99818 -8.98872 -8.50886 -6.21513 -0.67457 0.16996 0.95753 1.16870 1.31536 1.44910 1.52039 1.55066 1.73719 1.79900 2.14692 2.25154 2.43532 2.69484 2.79001 2.87629 3.21697 3.27103 3.36931 3.51079 3.76341 3.80220 3.89277 4.00904 4.18535 4.20259 4.25580 4.33275 4.40152 4.44584 4.57778 4.68611 4.80932 4.94598 5.02335 5.09886 5.19572 5.26662 5.41558 5.58803 5.71483 6.11853 6.12326 6.22156 6.35530 6.41463 6.76216 6.94649 7.09413 8.61238 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.031646 B = 0.001825 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.570842 B =15340.028644 C =15627.504888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.130 3.870 3 H 0.069 0.931 4 C 0.155 3.845 5 H 0.136 0.864 6 N -0.695 5.695 7 C 0.369 3.631 8 C 0.039 3.961 9 N -0.408 5.408 10 C 0.046 3.954 11 C 0.182 3.818 12 C 0.290 3.710 13 N -0.420 5.420 14 N -0.502 5.502 15 C -0.139 4.139 16 C 0.087 3.913 17 N -0.611 5.611 18 C 0.550 3.450 19 O -0.558 6.558 20 C -0.103 4.103 21 S -0.178 6.178 22 C -0.527 4.527 23 H 0.064 0.936 24 C 0.047 3.953 25 N -0.915 5.915 26 Si 0.912 3.088 27 H -0.264 1.264 28 H -0.260 1.260 29 H -0.237 1.237 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.411 0.589 34 H 0.205 0.795 35 H 0.201 0.799 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.186 -2.638 29.611 29.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.088 0.912 4 C 0.049 3.951 5 H 0.154 0.846 6 N -0.327 5.327 7 C 0.126 3.874 8 C -0.133 4.133 9 N -0.120 5.120 10 C -0.115 4.115 11 C 0.042 3.958 12 C -0.028 4.028 13 N -0.097 5.097 14 N -0.227 5.227 15 C -0.178 4.178 16 C -0.035 4.035 17 N -0.346 5.346 18 C 0.338 3.662 19 O -0.437 6.437 20 C -0.253 4.253 21 S 0.049 5.951 22 C -0.675 4.675 23 H 0.082 0.918 24 C -0.158 4.158 25 N -0.553 5.553 26 Si 0.734 3.266 27 H -0.189 1.189 28 H -0.184 1.184 29 H -0.161 1.161 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.248 0.752 34 H 0.222 0.778 35 H 0.218 0.782 36 H 0.098 0.902 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.708 -0.253 30.152 30.275 hybrid contribution 0.792 -0.204 -1.272 1.513 sum -1.916 -0.457 28.880 28.947 Atomic orbital electron populations 1.22100 0.93892 1.03205 1.02516 1.21683 0.95156 0.96371 0.84159 0.91248 1.22182 0.97668 0.90318 0.84938 0.84617 1.44453 1.71569 1.16145 1.00518 1.19242 0.91603 0.90504 0.86039 1.24008 0.99837 0.94132 0.95276 1.68532 1.09044 1.33917 1.00549 1.23706 0.98062 0.87936 1.01818 1.16956 1.00619 0.91137 0.87043 1.24942 0.93228 0.92295 0.92352 1.81310 1.08396 1.08397 1.11579 1.67621 1.18730 1.36540 0.99825 1.23352 0.97524 1.02655 0.94238 1.22733 0.96062 0.88454 0.96232 1.48352 1.52993 1.29832 1.03404 1.19591 0.79665 0.84275 0.82675 1.90693 1.40736 1.28752 1.83472 1.23218 1.05014 1.03034 0.94069 1.84752 1.70781 1.40602 0.99014 1.22447 1.37397 1.13832 0.93804 0.91774 1.25525 0.95486 0.98529 0.96301 1.70012 1.43506 1.37640 1.04185 0.85901 0.80982 0.79825 0.79873 1.18880 1.18417 1.16068 0.89816 0.94259 0.90854 0.75160 0.77833 0.78205 0.90169 0.85728 0.88251 0.89767 0.87223 0.86859 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.10 71.98 0.66 -1.91 16 2 C 0.13 1.93 3.20 45.34 0.15 2.07 16 3 H 0.07 1.22 7.72 -2.39 -0.02 1.21 16 4 C 0.15 0.91 2.55 46.19 0.12 1.03 16 5 H 0.14 0.13 6.07 -2.39 -0.01 0.12 16 6 N -0.69 -5.13 5.35 -318.54 -1.70 -6.83 16 7 C 0.37 3.39 7.66 133.19 1.02 4.42 16 8 C 0.04 0.24 10.40 85.01 0.88 1.13 16 9 N -0.41 -3.60 10.48 -193.55 -2.03 -5.63 16 10 C 0.05 0.37 10.91 84.92 0.93 1.29 16 11 C 0.18 2.18 6.58 40.45 0.27 2.45 16 12 C 0.29 4.43 15.56 88.33 1.37 5.80 16 13 N -0.42 -8.36 18.54 19.00 0.35 -8.00 16 14 N -0.50 -6.85 10.46 -186.03 -1.95 -8.79 16 15 C -0.14 -0.71 6.77 31.99 0.22 -0.49 16 16 C 0.09 0.95 6.69 86.85 0.58 1.53 16 17 N -0.61 -12.16 3.07 -788.04 -2.42 -14.58 16 18 C 0.55 17.46 7.66 87.66 0.67 18.13 16 19 O -0.56 -22.48 14.92 -3.02 -0.05 -22.52 16 20 C -0.10 -3.62 5.16 71.24 0.37 -3.25 16 21 S -0.18 -8.71 18.55 -56.49 -1.05 -9.75 16 22 C -0.53 -29.83 10.04 67.95 0.68 -29.15 16 23 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 24 C 0.05 2.71 5.50 84.86 0.47 3.18 16 25 N -0.92 -54.64 13.97 21.65 0.30 -54.34 16 26 Si 0.91 44.18 27.74 68.60 1.90 46.08 16 27 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 28 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 29 H -0.24 -11.44 6.74 99.48 0.67 -10.77 16 30 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.04 0.97 6.91 -2.39 -0.02 0.96 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.41 3.64 8.49 -92.71 -0.79 2.86 16 34 H 0.21 -0.06 6.18 -2.91 -0.02 -0.08 16 35 H 0.20 0.47 8.06 -2.91 -0.02 0.45 16 36 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 1.02 7.48 -2.39 -0.02 1.01 16 40 H 0.11 3.57 7.85 -2.40 -0.02 3.55 16 41 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 42 H 0.28 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -78.70 375.76 2.00 -76.69 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 0.26 Total: 1.45 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 8.38 Total: 6.23 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -7.44 Total: -98.18 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.52 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.08 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.05 Total: -9.75 kcal Total: -78.70 2.00 -76.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122987078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.653 kcal (2) G-P(sol) polarization free energy of solvation -78.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds