Wall clock time and date at job start Wed Apr 1 2020 05:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.86934 * 2 1 4 4 C 1.54324 * 109.88442 * 121.02052 * 2 1 3 5 5 C 1.55151 * 102.94073 * 141.61113 * 4 2 1 6 6 H 1.09001 * 111.00004 * 206.38506 * 5 4 2 7 7 N 1.46506 * 111.00500 * 82.57325 * 5 4 2 8 8 C 1.38399 * 119.99915 * 154.99694 * 7 5 4 9 9 N 1.32729 * 120.17506 * 359.72621 * 8 7 5 10 10 C 1.32122 * 120.00055 * 179.72207 * 9 8 7 11 11 C 1.38646 * 120.35042 * 0.55461 * 10 9 8 12 12 N 1.31838 * 120.35122 * 359.72117 * 11 10 9 13 13 C 1.33035 * 119.99347 * 0.02562 * 12 11 10 14 14 C 1.43200 * 120.17694 * 179.97438 * 13 12 11 15 15 N 5.54030 * 156.23980 * 12.63809 * 2 1 3 16 16 C 1.54905 * 101.58488 * 324.49594 * 5 4 2 17 17 N 1.47028 * 109.88230 * 238.98982 * 2 1 3 18 18 C 1.34775 * 125.64515 * 61.60466 * 17 2 1 19 19 O 1.21276 * 120.00641 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99394 * 179.97438 * 18 17 2 21 21 S 1.81004 * 109.46843 * 180.02562 * 20 18 17 22 22 C 1.76201 * 99.99669 * 180.02562 * 21 20 18 23 23 H 1.07993 * 120.00474 * 0.02562 * 22 21 20 24 24 C 1.38800 * 119.99744 * 179.97438 * 22 21 20 25 25 N 1.31635 * 119.99826 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00159 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46958 * 60.00062 * 26 24 22 28 28 H 1.48497 * 109.47353 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47166 * 300.00388 * 26 24 22 30 30 H 1.08998 * 109.47007 * 299.29401 * 1 2 3 31 31 H 1.08996 * 109.47351 * 59.29842 * 1 2 3 32 32 H 1.08999 * 109.46680 * 179.29541 * 1 2 3 33 33 H 1.08997 * 110.71657 * 259.97367 * 4 2 1 34 34 H 1.09002 * 110.71774 * 23.06665 * 4 2 1 35 35 H 0.96999 * 119.99822 * 335.00044 * 7 5 4 36 36 H 1.07999 * 119.82782 * 180.28004 * 10 9 8 37 37 H 1.07997 * 119.82599 * 179.74416 * 11 10 9 38 38 H 1.09001 * 110.36617 * 155.84513 * 16 5 4 39 39 H 1.09002 * 110.36944 * 278.06458 * 16 5 4 40 40 H 1.08994 * 109.47096 * 300.00146 * 20 18 17 41 41 H 1.09003 * 109.46962 * 60.00648 * 20 18 17 42 42 H 0.97007 * 119.99255 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0550 -0.7479 1.2437 5 6 3.2877 -1.5132 0.6943 6 1 3.4857 -2.4089 1.2832 7 7 4.4675 -0.6458 0.6501 8 6 5.7352 -1.1988 0.7007 9 7 5.8861 -2.5141 0.7947 10 6 7.0979 -3.0387 0.8372 11 6 8.2170 -2.2213 0.7956 12 7 8.0832 -0.9126 0.7078 13 6 6.8696 -0.3700 0.6591 14 6 6.7197 1.0510 0.5642 15 7 6.6008 2.1782 0.4884 16 6 2.8146 -1.8804 -0.7343 17 7 2.0301 -0.7123 -1.1850 18 6 1.8074 -0.3583 -2.4663 19 8 1.1436 0.6251 -2.7172 20 6 2.3843 -1.1841 -3.5872 21 16 1.9132 -0.4570 -5.1764 22 6 2.6971 -1.5895 -6.2753 23 1 3.2576 -2.4242 -5.8812 24 6 2.5935 -1.4092 -7.6477 25 7 1.9100 -0.3920 -8.1281 26 14 3.4251 -2.6093 -8.8128 27 1 2.8830 -3.9735 -8.5882 28 1 3.1644 -2.1985 -10.2158 29 1 4.8886 -2.6106 -8.5606 30 1 -0.3633 0.5028 0.8962 31 1 -0.3634 0.5247 -0.8836 32 1 -0.3632 -1.0276 -0.0126 33 1 2.3530 -0.0433 2.0200 34 1 1.3040 -1.4415 1.6220 35 1 4.3601 0.3161 0.5855 36 1 7.2175 -4.1096 0.9091 37 1 9.2036 -2.6588 0.8351 38 1 3.6717 -2.0355 -1.3896 39 1 2.1903 -2.7735 -0.7095 40 1 3.4709 -1.2013 -3.5037 41 1 1.9988 -2.2018 -3.5244 42 1 1.8379 -0.2659 -9.0872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123158502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:48 Heat of formation + Delta-G solvation = 32.275683 kcal Electronic energy + Delta-G solvation = -27305.426521 eV Core-core repulsion = 23411.358753 eV Total energy + Delta-G solvation = -3894.067768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.23901 -41.26980 -39.06590 -37.88046 -36.60653 -34.83367 -34.62034 -33.39308 -32.40755 -30.37303 -29.91212 -27.70160 -27.03373 -26.63036 -24.89836 -23.61212 -21.97363 -20.64210 -20.40228 -19.53815 -19.30714 -18.75297 -18.08265 -17.17280 -16.91256 -16.62443 -16.46772 -16.23648 -16.03545 -15.54926 -15.30450 -15.04447 -14.87217 -14.61439 -14.39745 -14.26752 -14.20740 -13.95428 -13.76883 -13.63546 -13.29533 -13.20787 -13.13639 -12.88954 -12.74259 -12.63888 -12.60428 -12.29833 -12.25725 -11.78405 -11.76601 -11.37391 -11.15895 -10.90813 -10.33551 -10.23213 -9.77812 -9.04253 -8.72417 -8.37722 -6.17247 -0.54125 0.23686 1.20289 1.30594 1.41763 1.42088 1.52561 1.53718 1.74928 1.76339 2.03892 2.24409 2.45078 2.83908 2.96442 3.15413 3.19826 3.39596 3.43725 3.50141 3.82568 3.85552 3.92773 4.13390 4.15193 4.16700 4.31801 4.37720 4.43483 4.50562 4.59593 4.70285 4.79252 4.82310 4.90483 5.07385 5.24868 5.30067 5.37225 5.46889 5.77966 5.81304 6.15729 6.15804 6.34380 6.46027 6.78818 7.02984 7.10361 8.71431 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009028 B = 0.003228 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.720793 B = 8672.568044 C =10374.723262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 H 0.055 0.945 4 C -0.117 4.117 5 C 0.148 3.852 6 H 0.149 0.851 7 N -0.694 5.694 8 C 0.408 3.592 9 N -0.498 5.498 10 C 0.162 3.838 11 C -0.001 4.001 12 N -0.395 5.395 13 C 0.029 3.971 14 C 0.283 3.717 15 N -0.438 5.438 16 C 0.081 3.919 17 N -0.612 5.612 18 C 0.546 3.454 19 O -0.562 6.562 20 C -0.118 4.118 21 S -0.150 6.150 22 C -0.548 4.548 23 H 0.082 0.918 24 C 0.015 3.985 25 N -0.912 5.912 26 Si 0.999 3.001 27 H -0.258 1.258 28 H -0.278 1.278 29 H -0.263 1.263 30 H 0.089 0.911 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.408 0.592 36 H 0.229 0.771 37 H 0.214 0.786 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.983 -13.092 27.534 31.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 H 0.073 0.927 4 C -0.155 4.155 5 C 0.043 3.957 6 H 0.167 0.833 7 N -0.322 5.322 8 C 0.167 3.833 9 N -0.220 5.220 10 C -0.004 4.004 11 C -0.169 4.169 12 N -0.110 5.110 13 C -0.115 4.115 14 C -0.033 4.033 15 N -0.116 5.116 16 C -0.042 4.042 17 N -0.347 5.347 18 C 0.334 3.666 19 O -0.440 6.440 20 C -0.269 4.269 21 S 0.077 5.923 22 C -0.696 4.696 23 H 0.100 0.900 24 C -0.190 4.190 25 N -0.548 5.548 26 Si 0.820 3.180 27 H -0.183 1.183 28 H -0.203 1.203 29 H -0.187 1.187 30 H 0.108 0.892 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.146 0.854 35 H 0.245 0.755 36 H 0.245 0.755 37 H 0.231 0.769 38 H 0.088 0.912 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.490 -9.830 26.850 29.558 hybrid contribution 1.087 -0.891 -1.149 1.816 sum 8.577 -10.721 25.701 29.139 Atomic orbital electron populations 1.22079 0.94416 1.02762 1.02262 1.21787 0.95273 0.96056 0.84896 0.92717 1.23113 0.96670 1.00689 0.95054 1.22308 0.83375 0.95283 0.94707 0.83329 1.44713 1.01919 1.09634 1.75960 1.18954 0.85518 0.90069 0.88712 1.68323 1.27540 1.07758 1.18400 1.24764 0.85939 1.04211 0.85508 1.24220 1.03304 0.87162 1.02224 1.68082 1.22067 1.16142 1.04744 1.16405 0.90858 0.85929 1.18346 1.25189 0.93385 0.91992 0.92776 1.81314 1.07522 1.12323 1.10482 1.23177 0.95609 0.88827 0.96586 1.48591 1.52950 1.29451 1.03717 1.19687 0.79650 0.84340 0.82916 1.90682 1.40885 1.28800 1.83631 1.23281 1.03922 1.03038 0.96642 1.85586 1.70711 1.40251 0.95781 1.23142 1.38535 1.14184 0.93696 0.90027 1.26149 0.95648 0.97937 0.99282 1.70187 1.40057 1.30273 1.14278 0.85003 0.78713 0.78049 0.76241 1.18286 1.20285 1.18723 0.89231 0.95215 0.91294 0.87521 0.85397 0.75531 0.75481 0.76901 0.91184 0.87449 0.88730 0.87557 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 9.10 71.98 0.66 -2.69 16 2 C 0.12 2.50 3.44 45.34 0.16 2.66 16 3 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.12 -1.09 6.08 31.78 0.19 -0.90 16 5 C 0.15 1.62 3.46 46.38 0.16 1.78 16 6 H 0.15 0.96 7.50 -2.39 -0.02 0.95 16 7 N -0.69 -10.40 5.25 -317.01 -1.66 -12.06 16 8 C 0.41 6.42 7.48 133.52 1.00 7.42 16 9 N -0.50 -5.56 9.33 -191.79 -1.79 -7.35 16 10 C 0.16 0.84 11.22 84.75 0.95 1.79 16 11 C 0.00 -0.01 11.21 84.79 0.95 0.94 16 12 N -0.39 -6.87 10.42 -187.89 -1.96 -8.83 16 13 C 0.03 0.57 6.61 40.77 0.27 0.84 16 14 C 0.28 7.03 14.32 88.33 1.27 8.30 16 15 N -0.44 -12.91 18.54 19.00 0.35 -12.55 16 16 C 0.08 1.39 6.41 86.79 0.56 1.95 16 17 N -0.61 -16.02 3.08 -787.22 -2.42 -18.45 16 18 C 0.55 21.27 7.66 87.66 0.67 21.95 16 19 O -0.56 -27.10 14.90 -3.02 -0.04 -27.15 16 20 C -0.12 -4.92 5.18 71.24 0.37 -4.55 16 21 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 22 C -0.55 -31.85 9.50 67.95 0.65 -31.21 16 23 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 24 C 0.01 0.84 5.49 84.86 0.47 1.31 16 25 N -0.91 -56.85 13.22 21.65 0.29 -56.56 16 26 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 27 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 28 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 29 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.03 0.90 6.89 -2.39 -0.02 0.89 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.13 0.58 7.85 -2.39 -0.02 0.56 16 35 H 0.41 7.17 7.51 -92.71 -0.70 6.47 16 36 H 0.23 -1.04 8.06 -2.91 -0.02 -1.06 16 37 H 0.21 -0.01 8.06 -2.91 -0.02 -0.03 16 38 H 0.07 1.41 7.50 -2.39 -0.02 1.40 16 39 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.09 3.74 7.86 -2.40 -0.02 3.72 16 41 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 42 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -88.70 379.52 2.31 -86.38 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.38 Total: 10.88 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 8.31 Total: 9.58 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -7.19 Total: -115.80 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.04 Total: -27.15 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -88.70 2.31 -86.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123158502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.660 kcal (2) G-P(sol) polarization free energy of solvation -88.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds