Wall clock time and date at job start Wed Apr 1 2020 04:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46975 * 262.64583 * 3 2 1 5 5 N 1.46496 * 109.47020 * 179.97438 * 4 3 2 6 6 C 1.45759 * 117.94472 * 90.00454 * 5 4 3 7 7 C 1.52924 * 110.48938 * 160.92334 * 6 5 4 8 8 C 1.53337 * 108.67184 * 50.75188 * 7 6 5 9 9 C 1.53070 * 108.42930 * 292.46852 * 8 7 6 10 10 H 1.09002 * 109.39977 * 288.77659 * 9 8 7 11 11 N 1.46498 * 109.40511 * 169.03079 * 9 8 7 12 12 C 1.38412 * 120.00148 * 154.99995 * 11 9 8 13 13 N 1.32743 * 119.43661 * 359.72965 * 12 11 9 14 14 C 1.31464 * 121.74183 * 179.75095 * 13 12 11 15 15 C 1.40795 * 120.38761 * 0.52097 * 14 13 12 16 16 C 1.41195 * 120.56782 * 179.72414 * 15 14 13 17 17 H 1.07999 * 119.99718 * 335.72519 * 16 15 14 18 18 C 1.39866 * 120.00226 * 155.72788 * 16 15 14 19 19 N 1.30901 * 119.99900 * 343.22965 * 18 16 15 20 20 Si 1.86801 * 120.00148 * 163.22390 * 18 16 15 21 21 H 1.48497 * 109.46863 * 89.99718 * 20 18 16 22 22 H 1.48496 * 109.47150 * 210.00196 * 20 18 16 23 23 H 1.48502 * 109.46686 * 330.00388 * 20 18 16 24 24 C 1.41278 * 118.86841 * 359.74580 * 15 14 13 25 25 C 1.36672 * 118.40230 * 359.97438 * 24 15 14 26 26 Cl 1.73599 * 120.26555 * 179.97438 * 25 24 15 27 27 C 1.33349 * 117.95107 * 270.02186 * 5 4 3 28 28 O 1.21279 * 118.24296 * 2.20370 * 27 5 4 29 29 H 4.44655 * 5.63331 * 179.97438 * 4 1 2 30 30 H 1.08996 * 109.47097 * 142.65622 * 3 2 1 31 31 H 1.08992 * 109.47595 * 22.64643 * 3 2 1 32 32 H 1.09006 * 109.47054 * 60.00319 * 4 3 2 33 33 H 1.09001 * 109.47055 * 300.00615 * 4 3 2 34 34 H 1.09007 * 109.29792 * 40.60849 * 6 5 4 35 35 H 1.09002 * 109.29915 * 281.23897 * 6 5 4 36 36 H 1.08998 * 109.59749 * 290.99434 * 7 6 5 37 37 H 1.08999 * 109.59709 * 170.51132 * 7 6 5 38 38 H 1.09000 * 109.67753 * 52.20469 * 8 7 6 39 39 H 1.08998 * 109.67402 * 172.73484 * 8 7 6 40 40 H 0.97001 * 119.99567 * 335.00368 * 11 9 8 41 41 H 1.07994 * 119.81121 * 180.28892 * 14 13 12 42 42 H 0.96994 * 120.00129 * 180.02562 * 19 18 16 43 43 H 1.07999 * 120.80375 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.1855 1.4307 5 7 4.6208 0.1856 1.4308 6 6 5.3038 1.4626 1.2659 7 6 6.7506 1.3624 1.7510 8 6 7.4051 0.1411 1.0943 9 6 6.7398 -1.1211 1.6487 10 1 7.0439 -1.2651 2.6855 11 7 7.1572 -2.2798 0.8555 12 6 7.1383 -3.5453 1.4159 13 7 6.7452 -3.6954 2.6749 14 6 6.7052 -4.8765 3.2508 15 6 7.0940 -6.0286 2.5408 16 6 7.0581 -7.2982 3.1574 17 1 7.1201 -7.3783 4.2327 18 6 6.9422 -8.4523 2.3758 19 7 6.5420 -8.3633 1.1326 20 14 7.3586 -10.1206 3.1058 21 1 6.1407 -10.7116 3.7163 22 1 7.8610 -11.0181 2.0348 23 1 8.4050 -9.9580 4.1469 24 6 7.5212 -5.8924 1.2011 25 6 7.5386 -4.6427 0.6481 26 17 8.0555 -4.4196 -0.9941 27 6 5.2459 -0.9827 1.5813 28 8 4.5718 -1.9871 1.6693 29 1 -1.0501 0.0002 -0.0001 30 1 3.0089 0.8178 -0.6234 31 1 3.0098 -0.9475 -0.3957 32 1 2.7929 -0.6316 2.0542 33 1 2.7920 1.1338 1.8264 34 1 4.7826 2.2270 1.8424 35 1 5.2956 1.7422 0.2124 36 1 6.7657 1.2470 2.8348 37 1 7.2940 2.2643 1.4693 38 1 7.2647 0.1857 0.0144 39 1 8.4701 0.1265 1.3260 40 1 7.4467 -2.1602 -0.0625 41 1 6.3758 -4.9633 4.2756 42 1 6.4613 -9.1636 0.5907 43 1 7.8259 -6.7552 0.6274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160900547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:17 Heat of formation + Delta-G solvation = 45.934868 kcal Electronic energy + Delta-G solvation = -27772.962266 eV Core-core repulsion = 23845.150347 eV Total energy + Delta-G solvation = -3927.811919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.114 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.47645 -38.57550 -36.29656 -36.09210 -35.52168 -34.56348 -33.62271 -32.29496 -30.43664 -29.82950 -29.36428 -27.96635 -25.05740 -24.67464 -23.44128 -22.17248 -21.51992 -20.98127 -18.55651 -18.26052 -17.39408 -16.77080 -16.69869 -16.39501 -15.91732 -15.39476 -14.91489 -14.45389 -14.24862 -14.09780 -14.04158 -13.77968 -13.43893 -13.30786 -13.05604 -12.91063 -12.70012 -12.16159 -11.88540 -11.72456 -11.60430 -11.44870 -11.36694 -11.24957 -11.14347 -10.95718 -10.87718 -10.68779 -10.45597 -10.35957 -10.15278 -9.87053 -9.76526 -9.31161 -8.71765 -8.61869 -8.22069 -8.02152 -6.88967 -6.64945 -4.25700 2.55853 2.64982 2.77300 2.86843 3.00972 3.08404 3.08681 3.13164 3.23776 3.27238 3.93584 4.06083 4.34777 4.58482 4.60357 4.70303 4.74293 4.81525 5.07699 5.13788 5.25083 5.34490 5.38777 5.42059 5.62120 5.65885 5.74337 5.78603 5.91157 5.94725 5.98368 5.99993 6.11482 6.43209 6.52545 6.70626 6.99186 7.12819 7.20372 7.53353 7.56950 7.70688 7.74823 8.08234 8.34005 8.43707 8.57620 8.74036 8.78305 9.61270 10.19069 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.003054 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.327123 B = 9167.018784 C =10002.632971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.177 4.177 3 C -0.027 4.027 4 C 0.117 3.883 5 N -0.615 5.615 6 C 0.115 3.885 7 C -0.130 4.130 8 C -0.131 4.131 9 C 0.166 3.834 10 H 0.112 0.888 11 N -0.721 5.721 12 C 0.296 3.704 13 N -0.486 5.486 14 C 0.019 3.981 15 C 0.040 3.960 16 C -0.453 4.453 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.798 5.798 20 Si 0.910 3.090 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.091 4.091 25 C -0.099 4.099 26 Cl -0.118 7.118 27 C 0.493 3.507 28 O -0.507 6.507 29 H 0.217 0.783 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.399 0.601 41 H 0.132 0.868 42 H 0.282 0.718 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 18.376 -2.212 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.178 4.178 3 C -0.065 4.065 4 C -0.006 4.006 5 N -0.351 5.351 6 C -0.008 4.008 7 C -0.169 4.169 8 C -0.170 4.170 9 C 0.055 3.945 10 H 0.130 0.870 11 N -0.361 5.361 12 C 0.063 3.937 13 N -0.201 5.201 14 C -0.140 4.140 15 C 0.035 3.965 16 C -0.483 4.483 17 H 0.100 0.900 18 C -0.144 4.144 19 N -0.424 5.424 20 Si 0.734 3.266 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.118 4.118 25 C -0.131 4.131 26 Cl -0.090 7.090 27 C 0.278 3.722 28 O -0.379 6.379 29 H 0.233 0.767 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.235 0.765 41 H 0.150 0.850 42 H 0.093 0.907 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.937 18.440 -1.867 18.636 hybrid contribution 0.094 -1.481 -0.906 1.739 sum -1.843 16.960 -2.773 17.283 Atomic orbital electron populations 1.24864 0.95900 1.01700 1.00658 1.22970 0.94314 0.99980 1.00544 1.19065 0.84828 1.03793 0.98840 1.21315 0.80418 1.03158 0.95748 1.47582 1.06119 1.07314 1.74113 1.21364 0.93251 0.85305 1.00857 1.21821 0.94562 0.98821 1.01667 1.21964 1.00952 0.93193 1.00866 1.20365 0.88602 0.86414 0.99131 0.87016 1.43501 1.75572 1.02292 1.14749 1.17235 1.02900 0.83812 0.89733 1.66677 1.17107 1.27933 1.08345 1.22324 1.04923 0.87012 0.99768 1.18298 0.92394 0.94233 0.91594 1.19313 1.44501 0.89682 0.94842 0.90014 1.25895 0.92352 1.01567 0.94629 1.69804 1.32633 1.31709 1.08244 0.86282 0.79768 0.80848 0.79676 1.19515 1.20164 1.18463 1.21261 0.99845 0.93962 0.96751 1.20887 1.12212 0.95506 0.84486 1.98233 1.90278 1.97338 1.23169 1.21386 0.92217 0.82399 0.76148 1.90775 1.65548 1.35090 1.46466 0.76654 0.89829 0.88955 0.89260 0.90679 0.90974 0.92125 0.90569 0.89602 0.91072 0.90049 0.76497 0.85011 0.90747 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.36 19.25 29.55 0.57 -1.79 16 2 C -0.18 -2.21 13.34 -37.12 -0.50 -2.71 16 3 C -0.03 -0.33 6.02 -29.51 -0.18 -0.51 16 4 C 0.12 1.41 5.15 -4.04 -0.02 1.39 16 5 N -0.61 -7.55 2.81 -174.95 -0.49 -8.05 16 6 C 0.12 0.92 6.39 -4.48 -0.03 0.89 16 7 C -0.13 -0.97 6.02 -26.60 -0.16 -1.13 16 8 C -0.13 -1.33 5.50 -26.52 -0.15 -1.47 16 9 C 0.17 2.55 2.69 -69.30 -0.19 2.37 16 10 H 0.11 1.90 7.51 -51.93 -0.39 1.51 16 11 N -0.72 -13.34 5.04 -55.17 -0.28 -13.61 16 12 C 0.30 6.79 6.92 -155.05 -1.07 5.72 16 13 N -0.49 -11.79 8.64 -11.75 -0.10 -11.89 16 14 C 0.02 0.48 10.97 -16.74 -0.18 0.30 16 15 C 0.04 1.06 5.59 -106.65 -0.60 0.47 16 16 C -0.45 -11.75 9.07 -37.85 -0.34 -12.10 16 17 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 18 C 0.07 1.81 5.18 -17.34 -0.09 1.72 16 19 N -0.80 -20.68 10.91 55.54 0.61 -20.08 16 20 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 24 C -0.09 -2.36 8.52 -38.99 -0.33 -2.69 16 25 C -0.10 -2.34 6.32 -39.57 -0.25 -2.59 16 26 Cl -0.12 -2.36 27.56 -51.86 -1.43 -3.79 16 27 C 0.49 8.21 7.19 -11.87 -0.09 8.12 16 28 O -0.51 -11.14 14.93 5.56 0.08 -11.06 16 29 H 0.22 1.58 7.80 -54.09 -0.42 1.15 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.09 1.34 7.20 -51.93 -0.37 0.96 16 33 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 34 H 0.07 0.44 7.92 -51.92 -0.41 0.03 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.60 8.12 -51.93 -0.42 0.17 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.40 6.77 7.19 -40.82 -0.29 6.48 16 41 H 0.13 3.07 8.06 -52.49 -0.42 2.65 16 42 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 43 H 0.14 3.71 6.20 -52.49 -0.33 3.38 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -31.74 377.80 -10.10 -41.84 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.55 Total: 11.42 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.60 Total: -4.02 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.27 Total: -53.62 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -1.43 Total: -3.79 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.74 -10.10 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160900547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.771 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds