Wall clock time and date at job start Wed Apr 1 2020 04:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47263 * 239.99733 * 3 2 1 5 5 H 1.48501 * 109.46944 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47333 * 119.99853 * 3 2 1 7 7 C 1.38816 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99909 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47140 * 324.99754 * 10 9 7 12 12 C 1.53004 * 109.46943 * 205.00011 * 10 9 7 13 13 N 1.46499 * 109.47198 * 54.99919 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21623 * 120.00244 * 359.72094 * 14 13 12 16 16 C 1.47344 * 119.99686 * 179.72403 * 14 13 12 17 17 C 1.36305 * 122.54099 * 179.97438 * 16 14 13 18 18 S 1.71012 * 109.01842 * 179.97438 * 17 16 14 19 19 C 1.75980 * 90.63223 * 0.02562 * 18 17 16 20 20 C 1.47378 * 125.23301 * 180.02562 * 19 18 17 21 21 N 1.31608 * 125.86026 * 179.66464 * 20 19 18 22 22 C 1.33627 * 109.24445 * 179.86360 * 21 20 19 23 23 C 1.35001 * 108.42738 * 0.40148 * 22 21 20 24 24 N 1.36589 * 125.85939 * 359.96963 * 20 19 18 25 25 H 0.97006 * 126.50624 * 359.96742 * 24 20 19 26 26 N 1.29958 * 109.52978 * 359.75452 * 19 18 17 27 27 C 1.52995 * 109.47091 * 85.00050 * 10 9 7 28 28 C 1.52999 * 117.50225 * 8.74581 * 27 10 9 29 29 C 1.52999 * 117.49761 * 300.08359 * 27 10 9 30 30 H 0.96996 * 119.99816 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00310 * 359.97438 * 9 7 2 32 32 H 1.09009 * 109.46730 * 294.99706 * 12 10 9 33 33 H 1.08998 * 109.46846 * 175.00251 * 12 10 9 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 35 35 H 1.07996 * 125.49088 * 359.97438 * 17 16 14 36 36 H 1.08001 * 125.78518 * 180.11895 * 22 21 20 37 37 H 1.07992 * 126.47638 * 179.79782 * 23 22 21 38 38 H 1.09006 * 115.55266 * 154.41988 * 27 10 9 39 39 H 1.08993 * 117.49781 * 359.97438 * 28 27 10 40 40 H 1.09000 * 117.50138 * 145.02405 * 28 27 10 41 41 H 1.09009 * 117.50018 * 214.98040 * 29 27 10 42 42 H 1.08997 * 117.49907 * 0.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5509 -0.5871 12 6 1.1812 -4.7524 -0.6082 13 7 0.7356 -4.3363 -1.9403 14 6 -0.0579 -5.1463 -2.6689 15 8 -0.3998 -6.2248 -2.2226 16 6 -0.5110 -4.7252 -4.0062 17 6 -1.3132 -5.5028 -4.7870 18 16 -1.6244 -4.6837 -6.2557 19 6 -0.6423 -3.3225 -5.7272 20 6 -0.3947 -2.0982 -6.5096 21 7 0.3320 -1.0708 -6.1243 22 6 0.3356 -0.1471 -7.0899 23 6 -0.4184 -0.5982 -8.1148 24 7 -0.8849 -1.8327 -7.7565 25 1 -1.4554 -2.4104 -8.2874 26 7 -0.1736 -3.5603 -4.5387 27 6 2.4207 -4.0350 1.4391 28 6 1.8113 -3.1975 2.5652 29 6 3.2977 -3.0593 2.2264 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 0.3131 -4.9200 0.0295 33 1 1.7562 -5.6749 -0.6890 34 1 1.0081 -3.4761 -2.2960 35 1 -1.6913 -6.4788 -4.5211 36 1 0.8503 0.8017 -7.0543 37 1 -0.6154 -0.0821 -9.0427 38 1 2.5619 -5.1000 1.6237 39 1 1.1523 -2.3769 2.2820 40 1 1.5519 -3.7114 3.4908 41 1 4.0155 -3.4823 2.9293 42 1 3.6158 -2.1478 1.7204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317019222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:55 Heat of formation + Delta-G solvation = 118.455268 kcal Electronic energy + Delta-G solvation = -27324.488977 eV Core-core repulsion = 23434.158236 eV Total energy + Delta-G solvation = -3890.330741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.14569 -40.29325 -38.50224 -37.43703 -34.44894 -33.12922 -32.81493 -31.80031 -30.74285 -29.05354 -28.26454 -25.95510 -24.08101 -23.21651 -22.07477 -21.92378 -21.38717 -20.62642 -19.58408 -19.19183 -18.82028 -17.83783 -17.20109 -16.55937 -15.71469 -15.62904 -15.22268 -15.03515 -14.81231 -14.46439 -14.37644 -14.06694 -13.91081 -13.69194 -13.35972 -13.30951 -13.02587 -12.75366 -12.20913 -11.96743 -11.20884 -11.09115 -10.76155 -10.74005 -10.45681 -10.41421 -10.17930 -10.12314 -10.09077 -10.03596 -9.87461 -9.55080 -9.51262 -9.38739 -9.09087 -8.85330 -8.59833 -8.24897 -6.93912 -5.69844 -2.99579 0.04501 0.78235 1.23964 1.49372 2.22906 2.46168 3.10074 3.49898 3.52621 3.55340 3.55752 3.60323 3.89331 4.42033 4.60653 4.72752 4.76044 5.02013 5.08877 5.12640 5.24040 5.44550 5.57837 5.62411 5.66153 5.79946 5.83020 5.92704 6.04587 6.13264 6.13902 6.45439 6.46111 6.53463 6.71934 6.81831 6.86913 6.94331 7.08242 7.29661 7.36119 7.77722 7.84226 8.00502 8.46455 8.52996 9.59222 10.12264 10.48244 11.51740 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.008947 B = 0.003792 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.924709 B = 7382.002534 C =10050.510964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.005 4.005 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.715 5.715 10 C 0.192 3.808 11 H 0.058 0.942 12 C 0.117 3.883 13 N -0.688 5.688 14 C 0.587 3.413 15 O -0.549 6.549 16 C 0.027 3.973 17 C -0.206 4.206 18 S 0.164 5.836 19 C 0.123 3.877 20 C 0.258 3.742 21 N -0.418 5.418 22 C -0.020 4.020 23 C -0.030 4.030 24 N -0.561 5.561 25 H 0.420 0.580 26 N -0.385 5.385 27 C -0.177 4.177 28 C -0.163 4.163 29 C -0.175 4.175 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.423 0.577 35 H 0.196 0.804 36 H 0.180 0.820 37 H 0.187 0.813 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 -8.200 -17.699 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.733 3.267 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.357 5.357 10 C 0.081 3.919 11 H 0.076 0.924 12 C -0.007 4.007 13 N -0.338 5.338 14 C 0.370 3.630 15 O -0.429 6.429 16 C -0.111 4.111 17 C -0.349 4.349 18 S 0.420 5.580 19 C -0.155 4.155 20 C -0.004 4.004 21 N -0.138 5.138 22 C -0.171 4.171 23 C -0.166 4.166 24 N -0.167 5.167 25 H 0.258 0.742 26 N -0.100 5.100 27 C -0.199 4.199 28 C -0.200 4.200 29 C -0.212 4.212 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.261 0.739 35 H 0.214 0.786 36 H 0.197 0.803 37 H 0.204 0.796 38 H 0.103 0.897 39 H 0.137 0.863 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.301 -8.546 -17.203 19.491 hybrid contribution -0.179 0.806 -0.246 0.862 sum -3.479 -7.740 -17.449 19.404 Atomic orbital electron populations 1.69643 1.05035 1.25686 1.57044 1.24675 0.95357 0.97460 1.02633 0.86353 0.78614 0.83965 0.77764 1.21186 1.21897 1.21428 1.19073 0.90783 0.83776 1.43371 0.91191 1.42432 1.05798 0.99430 1.88031 1.19982 0.94147 0.86074 0.91711 0.92435 1.21682 0.98990 0.97667 0.82370 1.45878 1.48429 1.22092 1.17427 1.17005 0.79130 0.84263 0.82635 1.90777 1.58349 1.22421 1.71316 1.20647 1.01705 0.90195 0.98532 1.26826 1.03940 1.06712 0.97432 1.83475 1.46903 1.10755 1.16864 1.23892 1.01941 0.95906 0.93743 1.19490 1.01807 0.94560 0.84550 1.70650 1.15970 0.99462 1.27736 1.22620 1.03384 1.00753 0.90375 1.22964 1.03565 0.87175 1.02924 1.43348 1.40832 1.17112 1.15400 0.74211 1.66812 1.19981 1.16060 1.07121 1.23071 1.06004 0.95266 0.95541 1.22912 0.96738 1.03550 0.96797 1.22850 0.93460 1.01920 1.02980 0.93544 0.77943 0.91382 0.91564 0.73865 0.78649 0.80329 0.79607 0.89660 0.86289 0.91364 0.91091 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 3 Si 0.90 22.48 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.30 8.15 -15.06 -0.12 -6.42 16 8 H 0.07 1.82 6.91 -52.48 -0.36 1.45 16 9 N -0.72 -16.92 3.08 -53.42 -0.16 -17.08 16 10 C 0.19 3.75 2.86 -67.93 -0.19 3.55 16 11 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 12 C 0.12 2.12 5.22 -4.04 -0.02 2.10 16 13 N -0.69 -12.96 5.38 -61.40 -0.33 -13.29 16 14 C 0.59 10.80 7.80 -12.56 -0.10 10.70 16 15 O -0.55 -10.83 16.68 5.26 0.09 -10.74 16 16 C 0.03 0.43 6.68 -84.59 -0.56 -0.13 16 17 C -0.21 -2.54 10.63 30.04 0.32 -2.23 16 18 S 0.16 1.54 23.17 -107.50 -2.49 -0.95 16 19 C 0.12 1.73 7.47 -14.63 -0.11 1.62 16 20 C 0.26 3.53 8.05 -154.61 -1.25 2.28 16 21 N -0.42 -6.89 11.28 -11.30 -0.13 -7.02 16 22 C -0.02 -0.24 11.84 -17.92 -0.21 -0.45 16 23 C -0.03 -0.24 12.03 -16.51 -0.20 -0.44 16 24 N -0.56 -4.89 6.22 -10.62 -0.07 -4.95 16 25 H 0.42 2.07 8.96 -40.82 -0.37 1.70 16 26 N -0.38 -6.61 10.07 -8.01 -0.08 -6.69 16 27 C -0.18 -3.21 5.70 -90.62 -0.52 -3.72 16 28 C -0.16 -3.16 9.74 -26.69 -0.26 -3.42 16 29 C -0.18 -3.24 9.87 -26.69 -0.26 -3.51 16 30 H 0.25 7.49 8.31 -40.82 -0.34 7.16 16 31 H 0.39 10.05 7.80 -40.82 -0.32 9.74 16 32 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.42 8.67 7.62 -40.82 -0.31 8.36 16 35 H 0.20 2.05 8.01 -52.49 -0.42 1.63 16 36 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.19 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 39 H 0.12 2.76 6.68 -51.93 -0.35 2.41 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 42 H 0.10 2.14 6.22 -51.93 -0.32 1.82 16 LS Contribution 376.74 15.07 5.68 5.68 Total: -1.00 -34.29 376.74 -10.34 -44.63 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -4.96 Total: 20.13 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -3.58 Total: -0.29 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -0.04 Total: -75.90 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.49 Total: -0.95 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.29 -10.34 -44.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317019222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.081 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds