Wall clock time and date at job start Wed Apr 1 2020 04:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47263 * 239.99733 * 3 2 1 5 5 H 1.48501 * 109.46944 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47333 * 119.99853 * 3 2 1 7 7 C 1.38816 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99909 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47140 * 324.99754 * 10 9 7 12 12 C 1.53004 * 109.46943 * 205.00011 * 10 9 7 13 13 N 1.46499 * 109.47198 * 54.99919 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21623 * 120.00244 * 359.72094 * 14 13 12 16 16 C 1.47344 * 119.99686 * 179.72403 * 14 13 12 17 17 C 1.36305 * 122.54099 * 179.97438 * 16 14 13 18 18 S 1.71012 * 109.01842 * 179.97438 * 17 16 14 19 19 C 1.75980 * 90.63223 * 0.02562 * 18 17 16 20 20 C 1.47378 * 125.23301 * 180.02562 * 19 18 17 21 21 N 1.31608 * 125.86026 * 179.66464 * 20 19 18 22 22 C 1.33627 * 109.24445 * 179.86360 * 21 20 19 23 23 C 1.35001 * 108.42738 * 0.40148 * 22 21 20 24 24 N 1.36589 * 125.85939 * 359.96963 * 20 19 18 25 25 H 0.97006 * 126.50624 * 359.96742 * 24 20 19 26 26 N 1.29958 * 109.52978 * 359.75452 * 19 18 17 27 27 C 1.52995 * 109.47091 * 85.00050 * 10 9 7 28 28 C 1.52999 * 117.50225 * 8.74581 * 27 10 9 29 29 C 1.52999 * 117.49761 * 300.08359 * 27 10 9 30 30 H 0.96996 * 119.99816 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00310 * 359.97438 * 9 7 2 32 32 H 1.09009 * 109.46730 * 294.99706 * 12 10 9 33 33 H 1.08998 * 109.46846 * 175.00251 * 12 10 9 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 35 35 H 1.07996 * 125.49088 * 359.97438 * 17 16 14 36 36 H 1.08001 * 125.78518 * 180.11895 * 22 21 20 37 37 H 1.07992 * 126.47638 * 179.79782 * 23 22 21 38 38 H 1.09006 * 115.55266 * 154.41988 * 27 10 9 39 39 H 1.08993 * 117.49781 * 359.97438 * 28 27 10 40 40 H 1.09000 * 117.50138 * 145.02405 * 28 27 10 41 41 H 1.09009 * 117.50018 * 214.98040 * 29 27 10 42 42 H 1.08997 * 117.49907 * 0.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5509 -0.5871 12 6 1.1812 -4.7524 -0.6082 13 7 0.7356 -4.3363 -1.9403 14 6 -0.0579 -5.1463 -2.6689 15 8 -0.3998 -6.2248 -2.2226 16 6 -0.5110 -4.7252 -4.0062 17 6 -1.3132 -5.5028 -4.7870 18 16 -1.6244 -4.6837 -6.2557 19 6 -0.6423 -3.3225 -5.7272 20 6 -0.3947 -2.0982 -6.5096 21 7 0.3320 -1.0708 -6.1243 22 6 0.3356 -0.1471 -7.0899 23 6 -0.4184 -0.5982 -8.1148 24 7 -0.8849 -1.8327 -7.7565 25 1 -1.4554 -2.4104 -8.2874 26 7 -0.1736 -3.5603 -4.5387 27 6 2.4207 -4.0350 1.4391 28 6 1.8113 -3.1975 2.5652 29 6 3.2977 -3.0593 2.2264 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 0.3131 -4.9200 0.0295 33 1 1.7562 -5.6749 -0.6890 34 1 1.0081 -3.4761 -2.2960 35 1 -1.6913 -6.4788 -4.5211 36 1 0.8503 0.8017 -7.0543 37 1 -0.6154 -0.0821 -9.0427 38 1 2.5619 -5.1000 1.6237 39 1 1.1523 -2.3769 2.2820 40 1 1.5519 -3.7114 3.4908 41 1 4.0155 -3.4823 2.9293 42 1 3.6158 -2.1478 1.7204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317019222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:54 Heat of formation + Delta-G solvation = 92.788247 kcal Electronic energy + Delta-G solvation = -27325.601982 eV Core-core repulsion = 23434.158236 eV Total energy + Delta-G solvation = -3891.443747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.97300 -41.49338 -39.84429 -38.99156 -35.95001 -35.05651 -33.68107 -32.85111 -32.49170 -30.06102 -29.89578 -27.10779 -25.64519 -24.87221 -23.45392 -22.88822 -22.74949 -21.73554 -20.92431 -20.25975 -20.05973 -19.21360 -18.77230 -17.82668 -16.96996 -16.90171 -16.61944 -16.30675 -16.18678 -16.06168 -15.47000 -15.39739 -15.13668 -14.87265 -14.71978 -14.47026 -14.43491 -14.22696 -13.67887 -13.18928 -12.94061 -12.83310 -12.64526 -12.60502 -12.14746 -11.96174 -11.59490 -11.39241 -11.31529 -11.08420 -11.03225 -11.01534 -10.99429 -10.81764 -10.61092 -10.44129 -10.04053 -9.10719 -8.97334 -7.86363 -5.13491 -0.90415 -0.11330 0.27996 0.45770 1.29379 1.47427 1.50678 1.54642 1.69308 2.08648 2.24544 2.38527 2.59885 3.01358 3.14888 3.42272 3.49443 3.87030 3.94012 4.01153 4.03226 4.13208 4.28704 4.33769 4.35614 4.49051 4.51997 4.58481 4.60975 4.68714 4.91658 4.96259 4.98040 5.18072 5.23697 5.40255 5.50005 5.65153 5.67172 5.71290 6.15929 6.32899 6.34959 6.57469 7.01876 7.08244 7.41265 8.12104 8.37026 9.36190 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.008947 B = 0.003792 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.924709 B = 7382.002534 C =10050.510964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.067 4.067 3 Si 0.957 3.043 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.279 1.279 7 C -0.219 4.219 8 H 0.074 0.926 9 N -0.719 5.719 10 C 0.191 3.809 11 H 0.054 0.946 12 C 0.125 3.875 13 N -0.696 5.696 14 C 0.585 3.415 15 O -0.570 6.570 16 C -0.011 4.011 17 C -0.208 4.208 18 S 0.305 5.695 19 C 0.089 3.911 20 C 0.228 3.772 21 N -0.487 5.487 22 C -0.064 4.064 23 C 0.016 3.984 24 N -0.540 5.540 25 H 0.440 0.560 26 N -0.437 5.437 27 C -0.166 4.166 28 C -0.172 4.172 29 C -0.170 4.170 30 H 0.245 0.755 31 H 0.372 0.628 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.413 0.587 35 H 0.215 0.785 36 H 0.187 0.813 37 H 0.242 0.758 38 H 0.120 0.880 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.627 -9.742 -20.162 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.259 4.259 3 Si 0.788 3.212 4 H -0.211 1.211 5 H -0.228 1.228 6 H -0.205 1.205 7 C -0.350 4.350 8 H 0.092 0.908 9 N -0.359 5.359 10 C 0.082 3.918 11 H 0.072 0.928 12 C 0.001 3.999 13 N -0.345 5.345 14 C 0.369 3.631 15 O -0.451 6.451 16 C -0.148 4.148 17 C -0.352 4.352 18 S 0.562 5.438 19 C -0.187 4.187 20 C -0.034 4.034 21 N -0.208 5.208 22 C -0.215 4.215 23 C -0.122 4.122 24 N -0.147 5.147 25 H 0.282 0.718 26 N -0.153 5.153 27 C -0.188 4.188 28 C -0.209 4.209 29 C -0.207 4.207 30 H 0.054 0.946 31 H 0.204 0.796 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.250 0.750 35 H 0.232 0.768 36 H 0.204 0.796 37 H 0.258 0.742 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.524 -10.145 -19.688 22.427 hybrid contribution -0.137 1.220 0.337 1.273 sum -3.661 -8.925 -19.351 21.622 Atomic orbital electron populations 1.69801 1.06384 1.25438 1.59856 1.25325 0.96011 1.00341 1.04248 0.85445 0.77321 0.80557 0.77875 1.21050 1.22805 1.20486 1.19344 0.90954 0.84664 1.40087 0.90816 1.42477 1.05146 1.00336 1.87952 1.20129 0.93781 0.84846 0.93044 0.92766 1.21613 0.98490 0.97696 0.82059 1.45929 1.49042 1.21817 1.17719 1.17372 0.78364 0.83781 0.83539 1.90735 1.59103 1.23029 1.72210 1.20334 1.04621 0.91483 0.98387 1.27265 1.01988 1.07192 0.98739 1.82855 1.42542 1.05726 1.12687 1.24215 1.03086 0.97831 0.93601 1.19444 1.03180 0.94430 0.86362 1.70493 1.18112 1.01575 1.30644 1.23008 1.05890 1.01249 0.91326 1.23712 0.99658 0.85868 1.02923 1.43277 1.40083 1.17475 1.13873 0.71808 1.66734 1.22170 1.17152 1.09261 1.23020 1.05155 0.96934 0.93652 1.22770 0.96695 1.03019 0.98400 1.22840 0.93462 1.01085 1.03290 0.94590 0.79561 0.92299 0.89412 0.75043 0.76842 0.79623 0.74193 0.86244 0.90617 0.88822 0.87797 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.28 13.06 21.65 0.28 -60.00 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.96 47.88 29.55 68.60 2.03 49.90 16 4 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.30 -15.37 7.11 99.48 0.71 -14.67 16 6 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 7 C -0.22 -11.92 8.15 84.04 0.69 -11.23 16 8 H 0.07 3.91 6.91 -2.91 -0.02 3.89 16 9 N -0.72 -35.45 3.08 -322.94 -0.99 -36.44 16 10 C 0.19 7.57 2.86 44.99 0.13 7.69 16 11 H 0.05 2.20 8.08 -2.39 -0.02 2.18 16 12 C 0.13 4.60 5.22 86.38 0.45 5.05 16 13 N -0.70 -27.49 5.38 -466.43 -2.51 -30.00 16 14 C 0.59 22.28 7.80 86.64 0.68 22.95 16 15 O -0.57 -22.77 16.68 -4.10 -0.07 -22.84 16 16 C -0.01 -0.36 6.68 41.00 0.27 -0.09 16 17 C -0.21 -4.86 10.63 67.37 0.72 -4.14 16 18 S 0.31 4.84 23.17 -56.49 -1.31 3.53 16 19 C 0.09 2.50 7.47 87.38 0.65 3.16 16 20 C 0.23 6.20 8.05 136.30 1.10 7.30 16 21 N -0.49 -16.75 11.28 -189.66 -2.14 -18.89 16 22 C -0.06 -1.53 11.84 83.67 0.99 -0.54 16 23 C 0.02 0.21 12.03 83.18 1.00 1.21 16 24 N -0.54 -8.03 6.22 -187.53 -1.17 -9.19 16 25 H 0.44 2.61 8.96 -92.70 -0.83 1.78 16 26 N -0.44 -15.70 10.07 -179.25 -1.80 -17.50 16 27 C -0.17 -5.82 5.70 -10.80 -0.06 -5.88 16 28 C -0.17 -6.58 9.74 30.62 0.30 -6.28 16 29 C -0.17 -6.07 9.87 30.62 0.30 -5.77 16 30 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.37 20.49 7.80 -92.71 -0.72 19.76 16 32 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.41 18.12 7.62 -92.71 -0.71 17.41 16 35 H 0.21 4.02 8.01 -2.91 -0.02 3.99 16 36 H 0.19 3.72 8.06 -2.91 -0.02 3.69 16 37 H 0.24 0.40 8.06 -2.91 -0.02 0.37 16 38 H 0.12 3.45 8.11 -2.38 -0.02 3.43 16 39 H 0.08 3.63 6.68 -2.39 -0.02 3.61 16 40 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 42 H 0.08 3.14 6.22 -2.39 -0.01 3.13 16 Total: -1.00 -82.00 376.74 -1.15 -83.16 By element: Atomic # 1 Polarization: 49.41 SS G_CDS: -1.15 Total: 48.26 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 7.68 Total: 10.01 kcal Atomic # 7 Polarization: -163.69 SS G_CDS: -8.33 Total: -172.03 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.07 Total: -22.84 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.90 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.31 Total: 3.53 kcal Total: -82.00 -1.15 -83.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317019222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.944 kcal (2) G-P(sol) polarization free energy of solvation -82.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds