Wall clock time and date at job start Wed Apr 1 2020 04:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00212 * 2 1 4 4 H 1.48502 * 109.46720 * 270.00241 * 3 2 1 5 5 H 1.48498 * 109.47041 * 30.00088 * 3 2 1 6 6 H 1.48498 * 109.47199 * 150.00131 * 3 2 1 7 7 C 1.38813 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99605 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00399 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00359 * 174.85422 * 9 7 2 11 11 C 1.52998 * 112.84632 * 303.58778 * 10 9 7 12 12 N 1.46502 * 109.47247 * 287.12971 * 11 10 9 13 13 C 1.34776 * 119.99892 * 175.33964 * 12 11 10 14 14 O 1.21752 * 120.00121 * 359.73289 * 13 12 11 15 15 C 1.46210 * 119.99933 * 179.72739 * 13 12 11 16 16 S 1.75825 * 125.47420 * 7.15273 * 15 13 12 17 17 C 1.70573 * 91.66830 * 179.91312 * 16 15 13 18 18 C 1.33594 * 111.17023 * 0.35813 * 17 16 15 19 19 C 1.37328 * 125.47912 * 187.46189 * 15 13 12 20 20 N 1.39963 * 123.48133 * 359.95623 * 19 15 13 21 21 C 1.36159 * 125.94594 * 187.19603 * 20 19 15 22 22 C 1.35363 * 106.04800 * 179.97438 * 21 20 19 23 23 N 1.33786 * 106.53478 * 0.02562 * 22 21 20 24 24 N 1.28602 * 109.07213 * 359.75491 * 23 22 21 25 25 C 1.53777 * 113.61443 * 74.78126 * 10 9 7 26 26 C 1.53959 * 87.02196 * 89.23052 * 25 10 9 27 27 C 1.53784 * 113.61419 * 172.39111 * 10 9 7 28 28 H 0.97001 * 119.99790 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99896 * 354.85578 * 9 7 2 30 30 H 1.09006 * 109.47045 * 167.13697 * 11 10 9 31 31 H 1.08993 * 109.47385 * 47.13731 * 11 10 9 32 32 H 0.96998 * 119.99639 * 355.07353 * 12 11 10 33 33 H 1.08004 * 124.41530 * 180.02562 * 17 16 15 34 34 H 1.07998 * 122.45587 * 179.70717 * 18 17 16 35 35 H 1.07999 * 126.97100 * 0.02562 * 21 20 19 36 36 H 1.07991 * 126.72881 * 179.97438 * 22 21 20 37 37 H 1.08998 * 113.61496 * 203.75127 * 25 10 9 38 38 H 1.08997 * 113.61825 * 334.65728 * 25 10 9 39 39 H 1.08996 * 113.53991 * 270.81660 * 26 25 10 40 40 H 1.08998 * 113.66993 * 139.93151 * 26 25 10 41 41 H 1.08994 * 113.61385 * 25.35023 * 27 10 9 42 42 H 1.09002 * 113.60928 * 156.25165 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0536 -3.6542 -0.1149 11 6 2.9312 -3.7240 -1.3662 12 7 2.0829 -3.8904 -2.5490 13 6 2.6331 -3.8823 -3.7793 14 8 3.8344 -3.7317 -3.9080 15 6 1.7873 -4.0544 -4.9595 16 16 0.0298 -4.1044 -4.9568 17 6 -0.0165 -4.3151 -6.6488 18 6 1.2154 -4.3515 -7.1643 19 6 2.2381 -4.2089 -6.2474 20 7 3.5938 -4.2198 -6.5950 21 6 4.0943 -4.2310 -7.8612 22 6 5.4417 -4.2382 -7.7309 23 7 5.6973 -4.2318 -6.4177 24 7 4.5846 -4.2161 -5.7731 25 6 2.7854 -4.0626 1.1744 26 6 1.4899 -4.7857 1.5855 27 6 1.1671 -4.8948 0.0858 28 1 -0.4850 0.8401 -0.0004 29 1 0.3585 -2.3898 0.0752 30 1 3.6123 -4.5712 -1.2855 31 1 3.5065 -2.8028 -1.4583 32 1 1.1259 -4.0104 -2.4464 33 1 -0.9234 -4.4123 -7.2272 34 1 1.3980 -4.4830 -8.2206 35 1 3.5307 -4.2328 -8.7824 36 1 6.1677 -4.2481 -8.5303 37 1 3.6260 -4.7355 1.0049 38 1 3.0393 -3.2203 1.8179 39 1 0.7943 -4.1529 2.1368 40 1 1.6600 -5.7488 2.0667 41 1 0.1165 -4.7232 -0.1484 42 1 1.5645 -5.7956 -0.3819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326843285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:00 Heat of formation + Delta-G solvation = 170.445969 kcal Electronic energy + Delta-G solvation = -28123.334588 eV Core-core repulsion = 24235.258333 eV Total energy + Delta-G solvation = -3888.076255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.27680 -39.69632 -38.81097 -37.79018 -33.95653 -33.50830 -33.27789 -31.13425 -30.28512 -29.77193 -27.31118 -25.63171 -25.26290 -23.88362 -23.04816 -22.25678 -21.83777 -20.94197 -19.75843 -18.88488 -18.03039 -17.30330 -17.05637 -16.44747 -15.86228 -15.44272 -15.17766 -14.87505 -14.80800 -14.67519 -14.31689 -14.11954 -13.96579 -13.49715 -13.31703 -13.18161 -12.77591 -12.60761 -12.04120 -11.78213 -11.57949 -11.35371 -11.16486 -11.01844 -11.00156 -10.89114 -10.85400 -10.38250 -10.22298 -10.04502 -9.70574 -9.52046 -9.43573 -9.18116 -9.13862 -8.88845 -8.62865 -8.46107 -7.04103 -5.82956 -3.12146 0.03109 0.97787 1.30945 1.43559 2.35995 2.44554 2.72525 3.41903 3.43062 3.47213 3.48772 3.50409 4.19345 4.51628 4.54375 4.66059 4.85963 5.01977 5.12476 5.16749 5.21304 5.26289 5.29952 5.40562 5.42672 5.48461 5.54421 5.78108 5.89280 6.06214 6.11986 6.16953 6.19169 6.30262 6.38226 6.55263 6.66569 6.73991 6.90484 6.96749 7.05617 7.71010 7.87359 8.35838 8.57573 8.67083 9.47737 10.00601 10.36008 11.39096 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.003561 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.056008 B = 7861.969448 C = 8116.825379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.007 4.007 3 Si 0.903 3.097 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.071 0.929 9 N -0.699 5.699 10 C 0.174 3.826 11 C 0.125 3.875 12 N -0.701 5.701 13 C 0.561 3.439 14 O -0.477 6.477 15 C -0.243 4.243 16 S 0.289 5.711 17 C -0.229 4.229 18 C -0.147 4.147 19 C 0.161 3.839 20 N -0.238 5.238 21 C -0.069 4.069 22 C -0.047 4.047 23 N -0.285 5.285 24 N 0.017 4.983 25 C -0.154 4.154 26 C -0.128 4.128 27 C -0.148 4.148 28 H 0.255 0.745 29 H 0.386 0.614 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.393 0.607 33 H 0.182 0.818 34 H 0.154 0.846 35 H 0.188 0.812 36 H 0.189 0.811 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 -13.524 -14.826 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.734 3.266 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.081 3.919 11 C 0.000 4.000 12 N -0.352 5.352 13 C 0.344 3.656 14 O -0.349 6.349 15 C -0.368 4.368 16 S 0.556 5.444 17 C -0.367 4.367 18 C -0.180 4.180 19 C 0.053 3.947 20 N -0.027 5.027 21 C -0.216 4.216 22 C -0.202 4.202 23 N -0.154 5.154 24 N 0.037 4.963 25 C -0.195 4.195 26 C -0.166 4.166 27 C -0.186 4.186 28 H 0.065 0.935 29 H 0.221 0.779 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.227 0.773 33 H 0.199 0.801 34 H 0.171 0.829 35 H 0.205 0.795 36 H 0.206 0.794 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.286 -13.112 -12.307 18.128 hybrid contribution 0.212 0.976 -2.534 2.724 sum -2.074 -12.135 -14.841 19.283 Atomic orbital electron populations 1.69652 1.05036 1.25688 1.57565 1.24689 0.95449 0.97557 1.02644 0.86252 0.78848 0.83923 0.77591 1.21754 1.21800 1.20617 1.19118 0.91139 0.83631 1.42702 0.91062 1.42077 1.05870 0.98945 1.87003 1.20818 0.92408 0.87283 0.91381 1.21849 0.93012 1.01368 0.83815 1.45630 1.11204 1.73107 1.05249 1.16758 0.87545 0.79393 0.81924 1.91084 1.12679 1.46912 1.84268 1.24855 0.99370 1.15237 0.97305 1.83508 0.96844 1.63203 1.00798 1.25128 1.02047 1.08204 1.01368 1.19426 0.90133 1.07483 1.00935 1.16741 0.80668 1.04944 0.92361 1.44568 1.05461 1.46970 1.05659 1.23794 0.95903 1.12281 0.89586 1.23608 0.94123 1.06746 0.95679 1.75325 1.19101 1.16728 1.04225 1.79730 0.88079 1.14131 1.14383 1.23451 0.96170 1.00065 0.99794 1.22660 0.98720 0.99481 0.95721 1.23190 0.99982 0.98027 0.97375 0.93542 0.77894 0.92500 0.90499 0.77323 0.80088 0.82853 0.79540 0.79358 0.91293 0.90781 0.90098 0.92681 0.91630 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.83 13.06 55.49 0.72 -26.11 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.21 9.19 -15.06 -0.14 -6.35 16 8 H 0.07 1.90 7.37 -52.48 -0.39 1.51 16 9 N -0.70 -16.00 5.22 -46.48 -0.24 -16.24 16 10 C 0.17 3.21 0.91 -131.01 -0.12 3.09 16 11 C 0.12 2.34 5.13 -4.04 -0.02 2.32 16 12 N -0.70 -12.17 5.40 -61.76 -0.33 -12.50 16 13 C 0.56 10.30 7.73 -13.06 -0.10 10.20 16 14 O -0.48 -10.41 12.57 5.14 0.06 -10.34 16 15 C -0.24 -3.58 6.45 -36.71 -0.24 -3.82 16 16 S 0.29 2.94 22.17 -107.50 -2.38 0.56 16 17 C -0.23 -1.77 10.90 29.11 0.32 -1.45 16 18 C -0.15 -1.34 9.59 -41.26 -0.40 -1.74 16 19 C 0.16 2.18 6.70 -84.53 -0.57 1.61 16 20 N -0.24 -3.64 3.55 -11.06 -0.04 -3.68 16 21 C -0.07 -0.78 11.07 -16.66 -0.18 -0.97 16 22 C -0.05 -0.59 12.05 -17.73 -0.21 -0.81 16 23 N -0.29 -5.07 12.39 30.24 0.37 -4.69 16 24 N 0.02 0.33 8.59 60.35 0.52 0.85 16 25 C -0.15 -2.63 7.37 -25.83 -0.19 -2.82 16 26 C -0.13 -1.95 8.00 -25.82 -0.21 -2.16 16 27 C -0.15 -2.21 6.70 -25.91 -0.17 -2.38 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.39 9.38 7.83 -40.82 -0.32 9.06 16 30 H 0.06 1.00 7.91 -51.93 -0.41 0.59 16 31 H 0.08 1.71 7.14 -51.93 -0.37 1.34 16 32 H 0.39 6.13 7.16 -40.82 -0.29 5.84 16 33 H 0.18 0.77 8.06 -52.48 -0.42 0.34 16 34 H 0.15 0.91 7.39 -52.49 -0.39 0.52 16 35 H 0.19 1.18 7.53 -52.49 -0.40 0.79 16 36 H 0.19 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 42 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -34.87 366.45 -8.21 -43.08 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.07 Total: 11.69 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -2.33 Total: -5.56 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: 1.00 Total: -62.37 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.06 Total: -10.34 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -2.38 Total: 0.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.87 -8.21 -43.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326843285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.523 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds