Wall clock time and date at job start Wed Apr 1 2020 04:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00212 * 2 1 4 4 H 1.48502 * 109.46720 * 270.00241 * 3 2 1 5 5 H 1.48498 * 109.47041 * 30.00088 * 3 2 1 6 6 H 1.48498 * 109.47199 * 150.00131 * 3 2 1 7 7 C 1.38813 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99605 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00399 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00359 * 174.85422 * 9 7 2 11 11 C 1.52998 * 112.84632 * 303.58778 * 10 9 7 12 12 N 1.46502 * 109.47247 * 287.12971 * 11 10 9 13 13 C 1.34776 * 119.99892 * 175.33964 * 12 11 10 14 14 O 1.21752 * 120.00121 * 359.73289 * 13 12 11 15 15 C 1.46210 * 119.99933 * 179.72739 * 13 12 11 16 16 S 1.75825 * 125.47420 * 7.15273 * 15 13 12 17 17 C 1.70573 * 91.66830 * 179.91312 * 16 15 13 18 18 C 1.33594 * 111.17023 * 0.35813 * 17 16 15 19 19 C 1.37328 * 125.47912 * 187.46189 * 15 13 12 20 20 N 1.39963 * 123.48133 * 359.95623 * 19 15 13 21 21 C 1.36159 * 125.94594 * 187.19603 * 20 19 15 22 22 C 1.35363 * 106.04800 * 179.97438 * 21 20 19 23 23 N 1.33786 * 106.53478 * 0.02562 * 22 21 20 24 24 N 1.28602 * 109.07213 * 359.75491 * 23 22 21 25 25 C 1.53777 * 113.61443 * 74.78126 * 10 9 7 26 26 C 1.53959 * 87.02196 * 89.23052 * 25 10 9 27 27 C 1.53784 * 113.61419 * 172.39111 * 10 9 7 28 28 H 0.97001 * 119.99790 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99896 * 354.85578 * 9 7 2 30 30 H 1.09006 * 109.47045 * 167.13697 * 11 10 9 31 31 H 1.08993 * 109.47385 * 47.13731 * 11 10 9 32 32 H 0.96998 * 119.99639 * 355.07353 * 12 11 10 33 33 H 1.08004 * 124.41530 * 180.02562 * 17 16 15 34 34 H 1.07998 * 122.45587 * 179.70717 * 18 17 16 35 35 H 1.07999 * 126.97100 * 0.02562 * 21 20 19 36 36 H 1.07991 * 126.72881 * 179.97438 * 22 21 20 37 37 H 1.08998 * 113.61496 * 203.75127 * 25 10 9 38 38 H 1.08997 * 113.61825 * 334.65728 * 25 10 9 39 39 H 1.08996 * 113.53991 * 270.81660 * 26 25 10 40 40 H 1.08998 * 113.66993 * 139.93151 * 26 25 10 41 41 H 1.08994 * 113.61385 * 25.35023 * 27 10 9 42 42 H 1.09002 * 113.60928 * 156.25165 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0536 -3.6542 -0.1149 11 6 2.9312 -3.7240 -1.3662 12 7 2.0829 -3.8904 -2.5490 13 6 2.6331 -3.8823 -3.7793 14 8 3.8344 -3.7317 -3.9080 15 6 1.7873 -4.0544 -4.9595 16 16 0.0298 -4.1044 -4.9568 17 6 -0.0165 -4.3151 -6.6488 18 6 1.2154 -4.3515 -7.1643 19 6 2.2381 -4.2089 -6.2474 20 7 3.5938 -4.2198 -6.5950 21 6 4.0943 -4.2310 -7.8612 22 6 5.4417 -4.2382 -7.7309 23 7 5.6973 -4.2318 -6.4177 24 7 4.5846 -4.2161 -5.7731 25 6 2.7854 -4.0626 1.1744 26 6 1.4899 -4.7857 1.5855 27 6 1.1671 -4.8948 0.0858 28 1 -0.4850 0.8401 -0.0004 29 1 0.3585 -2.3898 0.0752 30 1 3.6123 -4.5712 -1.2855 31 1 3.5065 -2.8028 -1.4583 32 1 1.1259 -4.0104 -2.4464 33 1 -0.9234 -4.4123 -7.2272 34 1 1.3980 -4.4830 -8.2206 35 1 3.5307 -4.2328 -8.7824 36 1 6.1677 -4.2481 -8.5303 37 1 3.6260 -4.7355 1.0049 38 1 3.0393 -3.2203 1.8179 39 1 0.7943 -4.1529 2.1368 40 1 1.6600 -5.7488 2.0667 41 1 0.1165 -4.7232 -0.1484 42 1 1.5645 -5.7956 -0.3819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326843285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:59 Heat of formation + Delta-G solvation = 144.761445 kcal Electronic energy + Delta-G solvation = -28124.448353 eV Core-core repulsion = 24235.258333 eV Total energy + Delta-G solvation = -3889.190020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.31480 -41.02818 -40.05483 -38.90393 -35.35515 -35.23775 -34.51674 -32.15895 -31.98570 -30.99460 -28.66372 -26.72517 -26.68383 -25.71976 -23.97518 -23.51494 -22.95004 -22.17704 -20.70060 -20.13050 -19.52336 -19.11575 -18.14892 -17.50921 -17.04101 -16.84539 -16.46409 -16.19711 -15.92756 -15.84242 -15.63118 -15.45496 -15.05409 -14.94578 -14.73337 -14.40779 -14.18572 -13.61304 -13.52572 -13.13211 -12.98463 -12.96910 -12.72989 -12.47120 -12.18452 -12.09435 -12.00718 -11.98236 -11.94956 -11.56843 -11.47004 -10.96582 -10.84038 -10.65215 -10.26877 -10.13306 -9.85073 -9.48424 -8.99510 -7.96451 -5.22184 -0.90687 0.11610 0.50789 0.70958 1.40347 1.42923 1.44923 1.49346 1.52657 1.65928 2.15659 2.21423 2.51707 3.34876 3.38607 3.69093 3.72209 3.75158 3.80017 3.98001 4.00534 4.10118 4.21576 4.22431 4.26026 4.46012 4.63190 4.71050 4.80873 4.84300 4.87560 4.90089 4.98719 5.04333 5.11959 5.25118 5.30449 5.41149 5.48994 5.60239 5.68557 5.76975 6.28453 6.53566 7.26677 7.35148 7.58561 8.07864 8.33103 9.25903 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.003561 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.056008 B = 7861.969448 C = 8116.825379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.060 4.060 3 Si 0.951 3.049 4 H -0.298 1.298 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.224 4.224 8 H 0.061 0.939 9 N -0.703 5.703 10 C 0.158 3.842 11 C 0.135 3.865 12 N -0.699 5.699 13 C 0.553 3.447 14 O -0.523 6.523 15 C -0.301 4.301 16 S 0.309 5.691 17 C -0.193 4.193 18 C -0.151 4.151 19 C 0.154 3.846 20 N -0.247 5.247 21 C -0.047 4.047 22 C -0.058 4.058 23 N -0.331 5.331 24 N -0.047 5.047 25 C -0.154 4.154 26 C -0.118 4.118 27 C -0.129 4.129 28 H 0.250 0.750 29 H 0.379 0.621 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.401 0.599 33 H 0.229 0.771 34 H 0.195 0.805 35 H 0.244 0.756 36 H 0.227 0.773 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.631 -15.387 -17.651 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.253 4.253 3 Si 0.782 3.218 4 H -0.226 1.226 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.356 4.356 8 H 0.079 0.921 9 N -0.342 5.342 10 C 0.067 3.933 11 C 0.009 3.991 12 N -0.350 5.350 13 C 0.338 3.662 14 O -0.399 6.399 15 C -0.425 4.425 16 S 0.577 5.423 17 C -0.332 4.332 18 C -0.182 4.182 19 C 0.045 3.955 20 N -0.036 5.036 21 C -0.194 4.194 22 C -0.213 4.213 23 N -0.199 5.199 24 N -0.027 5.027 25 C -0.195 4.195 26 C -0.155 4.155 27 C -0.167 4.167 28 H 0.059 0.941 29 H 0.213 0.787 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.237 0.763 33 H 0.246 0.754 34 H 0.212 0.788 35 H 0.260 0.740 36 H 0.244 0.756 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.292 -15.011 -15.097 21.718 hybrid contribution 0.835 1.475 -1.810 2.480 sum -3.457 -13.536 -16.908 21.933 Atomic orbital electron populations 1.69745 1.05777 1.25702 1.59579 1.25222 0.96183 0.99831 1.04078 0.85479 0.78060 0.81374 0.76917 1.22601 1.21594 1.20255 1.19256 0.90830 0.85133 1.40357 0.92139 1.42078 1.05542 0.99642 1.86954 1.21124 0.93610 0.87048 0.91540 1.21612 0.93168 0.99469 0.84807 1.45569 1.11377 1.73163 1.04888 1.17344 0.87640 0.78195 0.82980 1.91067 1.14807 1.48860 1.85126 1.24640 1.01747 1.19675 0.96432 1.83414 0.93134 1.62460 1.03286 1.25721 1.03325 1.04297 0.99809 1.19766 0.88949 1.07368 1.02121 1.17455 0.80814 1.04193 0.93049 1.44856 1.05769 1.46337 1.06642 1.24720 0.95861 1.08905 0.89925 1.24386 0.95933 1.06228 0.94755 1.75235 1.19787 1.17918 1.06934 1.79733 0.89183 1.17585 1.16169 1.23461 0.97950 0.99856 0.98195 1.22582 0.96678 1.00326 0.95915 1.23139 0.99702 0.96671 0.97173 0.94057 0.78706 0.91538 0.95067 0.76345 0.75418 0.78790 0.73968 0.75624 0.89134 0.93536 0.91712 0.89477 0.90947 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.39 13.06 21.65 0.28 -56.10 16 2 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 3 Si 0.95 47.50 29.55 68.60 2.03 49.53 16 4 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.22 -12.25 9.19 84.03 0.77 -11.48 16 8 H 0.06 3.40 7.37 -2.91 -0.02 3.38 16 9 N -0.70 -33.10 5.22 -300.97 -1.57 -34.67 16 10 C 0.16 5.91 0.91 4.13 0.00 5.91 16 11 C 0.14 5.33 5.13 86.38 0.44 5.78 16 12 N -0.70 -25.27 5.40 -467.51 -2.52 -27.79 16 13 C 0.55 21.43 7.73 86.31 0.67 22.10 16 14 O -0.52 -24.66 12.57 -4.52 -0.06 -24.72 16 15 C -0.30 -8.89 6.45 24.13 0.16 -8.73 16 16 S 0.31 5.65 22.17 -56.49 -1.25 4.39 16 17 C -0.19 -2.03 10.90 66.77 0.73 -1.30 16 18 C -0.15 -2.09 9.59 21.18 0.20 -1.88 16 19 C 0.15 3.97 6.70 37.59 0.25 4.23 16 20 N -0.25 -7.44 3.55 -188.91 -0.67 -8.11 16 21 C -0.05 -0.95 11.07 83.36 0.92 -0.02 16 22 C -0.06 -1.40 12.05 83.73 1.01 -0.39 16 23 N -0.33 -12.23 12.39 -58.25 -0.72 -12.95 16 24 N -0.05 -1.90 8.59 37.02 0.32 -1.58 16 25 C -0.15 -5.24 7.37 31.18 0.23 -5.01 16 26 C -0.12 -3.38 8.00 31.18 0.25 -3.13 16 27 C -0.13 -3.65 6.70 31.12 0.21 -3.44 16 28 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.38 18.82 7.83 -92.71 -0.73 18.09 16 30 H 0.07 2.45 7.91 -2.38 -0.02 2.43 16 31 H 0.03 1.50 7.14 -2.39 -0.02 1.48 16 32 H 0.40 12.75 7.16 -92.71 -0.66 12.09 16 33 H 0.23 0.27 8.06 -2.91 -0.02 0.25 16 34 H 0.20 1.02 7.39 -2.91 -0.02 1.00 16 35 H 0.24 1.69 7.53 -2.91 -0.02 1.66 16 36 H 0.23 3.16 8.06 -2.92 -0.02 3.14 16 37 H 0.09 2.68 7.94 -2.39 -0.02 2.66 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 1.99 8.09 -2.39 -0.02 1.97 16 42 H 0.10 2.46 8.10 -2.39 -0.02 2.44 16 Total: -1.00 -84.86 366.45 1.84 -83.02 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.30 Total: 29.31 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 6.31 Total: -0.32 kcal Atomic # 7 Polarization: -136.33 SS G_CDS: -4.89 Total: -141.22 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.06 Total: -24.72 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Atomic # 16 Polarization: 5.65 SS G_CDS: -1.25 Total: 4.39 kcal Total: -84.86 1.84 -83.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326843285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.785 kcal (2) G-P(sol) polarization free energy of solvation -84.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds