Wall clock time and date at job start Wed Apr 1 2020 05:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47211 * 2 1 4 4 O 1.45203 * 109.47313 * 120.00203 * 2 1 3 5 5 C 1.34229 * 116.99579 * 269.99744 * 4 2 1 6 6 O 1.20819 * 120.00199 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99505 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.46735 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47466 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99890 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46838 * 89.99826 * 14 12 10 16 16 H 1.48497 * 109.47419 * 209.99978 * 14 12 10 17 17 H 1.48499 * 109.47011 * 330.00539 * 14 12 10 18 18 C 1.50702 * 109.47098 * 239.99917 * 2 1 3 19 19 O 1.21284 * 120.00220 * 244.99933 * 18 2 1 20 20 N 1.34783 * 119.99887 * 64.99903 * 18 2 1 21 21 C 1.46501 * 120.00021 * 180.02562 * 20 18 2 22 22 H 1.09005 * 110.00884 * 33.62194 * 21 20 18 23 23 C 1.53873 * 110.02871 * 272.19315 * 21 20 18 24 24 C 1.54164 * 108.70449 * 193.53211 * 23 21 20 25 25 S 1.82913 * 105.08871 * 27.90279 * 24 23 21 26 26 O 1.42091 * 109.35643 * 244.48070 * 25 24 23 27 27 O 1.42101 * 109.35318 * 111.27470 * 25 24 23 28 28 C 1.55048 * 110.02589 * 154.99920 * 21 20 18 29 29 H 1.09001 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46963 * 299.99977 * 1 2 3 31 31 H 1.08994 * 109.47647 * 59.99997 * 1 2 3 32 32 H 1.09001 * 109.46797 * 60.00347 * 7 5 4 33 33 H 1.08992 * 109.47518 * 300.00344 * 7 5 4 34 34 H 1.09002 * 109.47398 * 300.00410 * 8 7 5 35 35 H 1.09001 * 109.47194 * 60.00591 * 8 7 5 36 36 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 37 37 H 1.08998 * 109.47533 * 59.99948 * 9 8 7 38 38 H 0.97002 * 119.99731 * 180.02562 * 13 12 10 39 39 H 0.97000 * 119.99723 * 0.02562 * 20 18 2 40 40 H 1.09000 * 109.64347 * 313.37961 * 23 21 20 41 41 H 1.08999 * 109.64722 * 73.67649 * 23 21 20 42 42 H 1.09009 * 110.31536 * 269.00215 * 24 23 21 43 43 H 1.08996 * 110.40826 * 146.85753 * 24 23 21 44 44 H 1.08998 * 110.79195 * 279.99763 * 28 21 20 45 45 H 1.08997 * 110.78743 * 43.45548 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2172 0.0640 2.2810 6 8 1.9974 1.2517 2.2505 7 6 2.7184 -0.5773 3.5494 8 6 2.8637 0.4890 4.6370 9 6 3.3731 -0.1619 5.9245 10 6 3.5157 0.8882 6.9959 11 1 3.2675 1.9169 6.7803 12 6 3.9622 0.5356 8.2518 13 7 4.2641 -0.7172 8.5146 14 14 4.1397 1.8374 9.5798 15 1 2.8664 1.9501 10.3357 16 1 5.2336 1.4525 10.5073 17 1 4.4598 3.1444 8.9519 18 6 2.0323 -0.7104 -1.2305 19 8 2.6530 -1.7467 -1.1215 20 7 1.7918 -0.1942 -2.4521 21 6 2.2796 -0.8851 -3.6483 22 1 2.2588 -1.9635 -3.4907 23 6 3.7119 -0.4267 -3.9744 24 6 4.0687 -0.8955 -5.3990 25 16 2.4710 -0.9841 -6.2853 26 8 2.2056 -2.3332 -6.6439 27 8 2.4236 0.0357 -7.2737 28 6 1.4044 -0.5102 -4.8720 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.6872 -1.0409 3.3638 33 1 2.0089 -1.3370 3.8774 34 1 3.5734 1.2484 4.3087 35 1 1.8951 0.9530 4.8227 36 1 2.6637 -0.9215 6.2529 37 1 4.3418 -0.6256 5.7386 38 1 4.5778 -0.9654 9.3983 39 1 1.2957 0.6348 -2.5391 40 1 3.7697 0.6605 -3.9211 41 1 4.4085 -0.8643 -3.2593 42 1 4.5390 -1.8784 -5.3673 43 1 4.7298 -0.1757 -5.8815 44 1 0.4785 -1.0853 -4.8761 45 1 1.1966 0.5597 -4.8857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327722324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:26 Heat of formation + Delta-G solvation = -205.502511 kcal Electronic energy + Delta-G solvation = -27629.434279 eV Core-core repulsion = 23353.161252 eV Total energy + Delta-G solvation = -4276.273026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99906 -39.98414 -37.69671 -37.47970 -36.63500 -36.46819 -34.36514 -33.96941 -32.32956 -31.83896 -30.16251 -28.18133 -26.02131 -25.09809 -24.01675 -22.25686 -21.38542 -20.79549 -19.89660 -19.46272 -18.19812 -17.91377 -17.41599 -17.28035 -16.45479 -16.38662 -16.22699 -16.09157 -15.51927 -15.38665 -14.97298 -14.67828 -14.52383 -14.31766 -14.08838 -13.53007 -13.34511 -13.09570 -12.96903 -12.83990 -12.74158 -12.69068 -12.62811 -12.34061 -11.96997 -11.94434 -11.84518 -11.54201 -11.48046 -11.10209 -11.00571 -10.86092 -10.73882 -10.60998 -10.37147 -10.15358 -9.84230 -9.77721 -9.43732 -9.12297 -8.36546 -6.01814 -4.03986 -0.66584 1.73142 2.00854 2.11258 2.35254 2.88316 2.95372 3.31233 3.31764 3.37966 3.41944 3.56030 3.85310 3.92065 4.06895 4.12325 4.22837 4.43993 4.45486 4.58493 4.72864 4.76494 4.80027 5.00052 5.13405 5.21414 5.26972 5.27958 5.34264 5.57094 5.60310 5.64251 5.66643 6.02303 6.38527 6.56945 6.75710 6.76783 7.02624 7.58480 7.64065 7.75466 7.86187 7.97613 8.39883 9.02660 9.60181 11.09537 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.032575 B = 0.001528 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.339830 B =18319.694216 C =18495.353802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.067 3.933 3 H 0.112 0.888 4 O -0.333 6.333 5 C 0.463 3.537 6 O -0.507 6.507 7 C -0.111 4.111 8 C -0.099 4.099 9 C 0.020 3.980 10 C -0.521 4.521 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.521 3.479 19 O -0.506 6.506 20 N -0.717 5.717 21 C 0.151 3.849 22 H 0.117 0.883 23 C -0.133 4.133 24 C -0.587 4.587 25 S 2.398 3.602 26 O -0.929 6.929 27 O -0.933 6.933 28 C -0.609 4.609 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.407 0.593 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.261 0.466 -31.336 31.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 H 0.129 0.871 4 O -0.250 6.250 5 C 0.306 3.694 6 O -0.394 6.394 7 C -0.148 4.148 8 C -0.137 4.137 9 C -0.017 4.017 10 C -0.559 4.559 11 H 0.075 0.925 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.306 3.694 19 O -0.378 6.378 20 N -0.373 5.373 21 C 0.044 3.956 22 H 0.135 0.865 23 C -0.173 4.173 24 C -0.717 4.717 25 S 2.580 3.420 26 O -0.926 6.926 27 O -0.929 6.929 28 C -0.737 4.737 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.243 0.757 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.160 0.840 43 H 0.162 0.838 44 H 0.165 0.835 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.036 -0.288 -32.069 32.634 hybrid contribution 0.033 1.420 1.499 2.066 sum -6.003 1.132 -30.570 31.174 Atomic orbital electron populations 1.22158 0.91736 1.04167 1.04209 1.22306 0.96075 0.97713 0.83078 0.87054 1.86725 1.77242 1.41733 1.19280 1.24628 0.73511 0.86196 0.85019 1.90631 1.48039 1.16802 1.83880 1.21737 1.03276 1.01456 0.88351 1.21591 1.01763 0.95952 0.94361 1.19133 0.96446 0.96129 0.89986 1.21220 1.44094 0.94718 0.95859 0.92549 1.25024 0.95457 0.95361 0.98647 1.69963 1.45286 1.16437 1.21771 0.86573 0.77725 0.81928 0.81648 1.20662 1.21226 1.19872 1.20372 0.79542 0.85426 0.84079 1.90779 1.38356 1.22542 1.86152 1.45723 1.58938 1.28246 1.04363 1.21543 0.90748 0.99994 0.83267 0.86509 1.22380 0.96871 1.03522 0.94487 1.30463 1.21007 1.11957 1.08315 1.08861 0.79961 0.75636 0.77568 1.93659 1.83329 1.34158 1.81434 1.93645 1.85458 1.59195 1.54646 1.31092 1.13698 1.12980 1.15946 0.90698 0.90138 0.90376 0.87819 0.87825 0.92418 0.92387 0.96295 0.96284 0.92978 0.75686 0.89066 0.87910 0.83958 0.83846 0.83469 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.50 37.16 0.35 -0.89 16 2 C 0.07 0.68 2.97 -27.88 -0.08 0.59 16 3 H 0.11 1.05 7.16 -51.93 -0.37 0.68 16 4 O -0.33 -4.65 9.42 -45.89 -0.43 -5.08 16 5 C 0.46 7.20 7.93 36.01 0.29 7.49 16 6 O -0.51 -8.76 15.20 -18.74 -0.28 -9.05 16 7 C -0.11 -1.80 5.81 -27.88 -0.16 -1.96 16 8 C -0.10 -2.02 4.44 -26.73 -0.12 -2.14 16 9 C 0.02 0.50 4.97 -27.89 -0.14 0.37 16 10 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 14 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.52 4.94 7.18 -10.98 -0.08 4.86 16 19 O -0.51 -6.87 16.17 -14.05 -0.23 -7.09 16 20 N -0.72 -3.61 5.08 -52.31 -0.27 -3.87 16 21 C 0.15 0.64 2.91 -66.39 -0.19 0.45 16 22 H 0.12 0.63 7.57 -51.93 -0.39 0.23 16 23 C -0.13 -0.48 6.03 -25.67 -0.15 -0.63 16 24 C -0.59 -1.47 7.26 37.77 0.27 -1.19 16 25 S 2.40 10.04 6.11 -107.50 -0.66 9.39 16 26 O -0.93 -7.64 18.14 -57.71 -1.05 -8.69 16 27 O -0.93 -7.20 18.15 -57.71 -1.05 -8.25 16 28 C -0.61 -1.18 6.85 38.24 0.26 -0.92 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.32 7.92 -51.93 -0.41 -0.09 16 32 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.41 0.80 8.38 -40.82 -0.34 0.45 16 40 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.14 0.27 8.14 -51.92 -0.42 -0.15 16 43 H 0.14 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.15 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.15 -0.03 8.10 -51.93 -0.42 -0.45 16 LS Contribution 393.79 15.07 5.93 5.93 Total: -1.00 -40.27 393.79 -9.45 -49.72 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -6.97 Total: -6.25 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.17 Total: -7.46 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.47 Total: -29.76 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -3.04 Total: -38.16 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 10.04 SS G_CDS: -0.66 Total: 9.39 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -40.27 -9.45 -49.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327722324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.782 kcal (2) G-P(sol) polarization free energy of solvation -40.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds