Wall clock time and date at job start Wed Apr 1 2020 05:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47649 * 2 1 4 4 C 1.50699 * 109.47087 * 120.00733 * 2 1 3 5 5 H 1.07996 * 120.00649 * 119.99054 * 4 2 1 6 6 C 1.37881 * 119.99551 * 299.99281 * 4 2 1 7 7 N 1.31514 * 119.99854 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00065 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.46968 * 89.99966 * 8 6 4 10 10 H 1.48504 * 109.46895 * 209.99766 * 8 6 4 11 11 H 1.48501 * 109.46962 * 329.99893 * 8 6 4 12 12 S 1.81405 * 109.46769 * 239.99908 * 2 1 3 13 13 C 1.76198 * 102.99821 * 169.61246 * 12 2 1 14 14 C 1.38784 * 120.10484 * 4.48523 * 13 12 2 15 15 C 1.38205 * 119.98847 * 179.97438 * 14 13 12 16 16 C 1.38294 * 120.20138 * 0.02562 * 15 14 13 17 17 C 1.38257 * 120.20732 * 359.67984 * 16 15 14 18 18 C 1.38648 * 120.00578 * 0.59809 * 17 16 15 19 19 N 1.40146 * 120.09493 * 179.70083 * 18 17 16 20 20 C 1.34767 * 120.00216 * 34.52220 * 19 18 17 21 21 O 1.21300 * 120.00241 * 355.76031 * 20 19 18 22 22 C 1.50702 * 120.00020 * 175.75795 * 20 19 18 23 23 C 1.53002 * 109.47155 * 179.97438 * 22 20 19 24 24 C 1.50702 * 109.47155 * 179.97438 * 23 22 20 25 25 N 1.33316 * 126.54911 * 269.68838 * 24 23 22 26 26 N 1.28995 * 107.35350 * 179.83588 * 25 24 23 27 27 N 1.28778 * 108.72583 * 0.43240 * 26 25 24 28 28 H 0.97001 * 125.45441 * 179.72353 * 27 26 25 29 29 N 1.28884 * 109.10192 * 359.72560 * 27 26 25 30 30 H 1.09003 * 109.47034 * 305.14881 * 1 2 3 31 31 H 1.08997 * 109.46911 * 65.14135 * 1 2 3 32 32 H 1.08997 * 109.47677 * 185.14501 * 1 2 3 33 33 H 0.97003 * 119.99749 * 180.02562 * 7 6 4 34 34 H 1.07995 * 120.00838 * 359.97438 * 14 13 12 35 35 H 1.08000 * 119.89542 * 179.97438 * 15 14 13 36 36 H 1.07995 * 119.89766 * 179.97438 * 16 15 14 37 37 H 1.07998 * 119.99447 * 180.29467 * 17 16 15 38 38 H 0.97005 * 119.99846 * 214.52053 * 19 18 17 39 39 H 1.08998 * 109.47110 * 60.00310 * 22 20 19 40 40 H 1.08998 * 109.47136 * 299.99953 * 22 20 19 41 41 H 1.09006 * 109.46936 * 60.00305 * 23 22 20 42 42 H 1.08998 * 109.47287 * 300.00139 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6531 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6249 1.2790 2.6541 9 1 -0.8027 0.8727 2.6998 10 1 0.9761 1.9950 3.9069 11 1 0.8473 2.1764 1.4921 12 16 2.1346 -0.8552 -1.4812 13 6 3.8588 -0.4925 -1.4722 14 6 4.4170 0.2096 -0.4131 15 6 5.7698 0.4923 -0.4082 16 6 6.5708 0.0780 -1.4567 17 6 6.0245 -0.6273 -2.5129 18 6 4.6674 -0.9105 -2.5294 19 7 4.1106 -1.6198 -3.6023 20 6 4.8243 -2.5851 -4.2148 21 8 5.9749 -2.7879 -3.8890 22 6 4.1927 -3.4125 -5.3046 23 6 5.2103 -4.4278 -5.8287 24 6 4.5785 -5.2556 -6.9181 25 7 3.9195 -6.4039 -6.7616 26 7 3.5350 -6.7893 -7.9310 27 7 3.9376 -5.9308 -8.8024 28 1 3.7843 -5.9855 -9.7586 29 7 4.5769 -4.9872 -8.2006 30 1 -0.3633 0.5916 0.8403 31 1 -0.3633 0.4320 -0.9324 32 1 -0.3634 -1.0235 0.0922 33 1 1.9034 -0.5280 4.4375 34 1 3.7943 0.5350 0.4071 35 1 6.2025 1.0391 0.4165 36 1 7.6273 0.3019 -1.4480 37 1 6.6542 -0.9532 -3.3276 38 1 3.2114 -1.4160 -3.9039 39 1 3.8778 -2.7606 -6.1194 40 1 3.3261 -3.9392 -4.9050 41 1 5.5256 -5.0798 -5.0140 42 1 6.0766 -3.9008 -6.2284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362143990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:05 Heat of formation + Delta-G solvation = 91.796059 kcal Electronic energy + Delta-G solvation = -26667.728852 eV Core-core repulsion = 22776.242081 eV Total energy + Delta-G solvation = -3891.486771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.47841 -41.51162 -39.41356 -36.33737 -36.01343 -35.65355 -34.97090 -33.23854 -32.71496 -31.87410 -30.48236 -27.27650 -26.90488 -25.54874 -24.24602 -23.84405 -23.19362 -22.41620 -21.23995 -20.10495 -19.00528 -18.90022 -18.26334 -17.98560 -17.75263 -17.18540 -16.83250 -16.05401 -15.89787 -15.72111 -15.36982 -15.16099 -14.99227 -14.70278 -14.43703 -14.29537 -14.10789 -13.86108 -13.59759 -13.51829 -13.14408 -13.02850 -12.91694 -12.59252 -12.42282 -12.32743 -12.24576 -12.06007 -11.97264 -11.57919 -11.49515 -11.39711 -11.29427 -10.87768 -10.81233 -10.76037 -10.47128 -9.26311 -8.34602 -8.08264 -6.40887 0.13521 0.27058 0.46806 0.85247 0.99895 1.29400 1.34759 1.44138 1.49914 1.57233 1.71732 2.07543 2.27177 2.86100 2.87761 3.00015 3.30185 3.61908 3.95402 4.05660 4.15379 4.22839 4.33062 4.37970 4.45810 4.49467 4.55056 4.58637 4.60591 4.63488 4.66797 4.88310 4.90102 5.01462 5.07318 5.29127 5.29952 5.37953 5.40737 5.55101 5.66899 5.67247 6.09524 6.12826 6.39814 6.63611 7.08401 7.21215 7.21471 8.81819 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.002448 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.679850 B =11436.267219 C =12573.709592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.043 3.957 3 H 0.050 0.950 4 C -0.512 4.512 5 H 0.038 0.962 6 C 0.026 3.974 7 N -0.937 5.937 8 Si 0.941 3.059 9 H -0.262 1.262 10 H -0.298 1.298 11 H -0.243 1.243 12 S -0.133 6.133 13 C -0.109 4.109 14 C -0.122 4.122 15 C -0.127 4.127 16 C -0.111 4.111 17 C -0.118 4.118 18 C 0.144 3.856 19 N -0.660 5.660 20 C 0.519 3.481 21 O -0.552 6.552 22 C -0.122 4.122 23 C -0.004 4.004 24 C 0.174 3.826 25 N -0.304 5.304 26 N -0.063 5.063 27 N -0.204 5.204 28 H 0.492 0.508 29 N -0.297 5.297 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.268 0.732 34 H 0.126 0.874 35 H 0.136 0.864 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.420 0.580 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.430 -1.300 -25.206 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 H 0.068 0.932 4 C -0.551 4.551 5 H 0.057 0.943 6 C -0.174 4.174 7 N -0.576 5.576 8 Si 0.767 3.233 9 H -0.188 1.188 10 H -0.226 1.226 11 H -0.167 1.167 12 S 0.112 5.888 13 C -0.224 4.224 14 C -0.146 4.146 15 C -0.147 4.147 16 C -0.132 4.132 17 C -0.139 4.139 18 C 0.043 3.957 19 N -0.305 5.305 20 C 0.309 3.691 21 O -0.430 6.430 22 C -0.163 4.163 23 C -0.045 4.045 24 C -0.109 4.109 25 N -0.176 5.176 26 N -0.058 5.058 27 N -0.055 5.055 28 H 0.351 0.649 29 N -0.150 5.150 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.154 0.846 36 H 0.171 0.829 37 H 0.164 0.836 38 H 0.259 0.741 39 H 0.146 0.854 40 H 0.131 0.869 41 H 0.117 0.883 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.111 -2.681 -25.832 26.156 hybrid contribution -0.032 1.427 1.421 2.014 sum 3.079 -1.254 -24.411 24.636 Atomic orbital electron populations 1.21918 0.93959 1.02262 1.01323 1.21323 0.96822 0.97239 0.93238 0.93168 1.21051 1.31859 1.12606 0.89566 0.94336 1.25792 0.96801 0.99696 0.95140 1.70024 1.46674 1.42138 0.98730 0.85971 0.79553 0.80077 0.77718 1.18762 1.22556 1.16724 1.83977 0.99760 1.70479 1.34550 1.21616 0.98036 1.05642 0.97155 1.21549 0.97065 0.98880 0.97113 1.21309 0.92782 1.01030 0.99602 1.21336 1.00893 0.97692 0.93234 1.21265 0.93022 0.98889 1.00734 1.17312 0.92810 0.97437 0.88123 1.43499 1.19804 1.35734 1.31503 1.21133 0.86083 0.79092 0.82832 1.90697 1.18446 1.68669 1.65153 1.21565 0.99844 0.97714 0.97189 1.19635 0.97122 0.95047 0.92663 1.25737 0.99663 0.93782 0.91721 1.75943 1.14363 1.12280 1.15033 1.78943 1.16914 1.16310 0.93672 1.47884 1.32188 1.11456 1.13973 0.64895 1.74714 1.16981 1.15231 1.08092 0.93055 0.90487 0.92245 0.92241 0.85645 0.84582 0.82874 0.83586 0.74129 0.85401 0.86889 0.88285 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 8.61 71.98 0.62 -4.60 16 2 C 0.04 1.87 1.61 29.85 0.05 1.92 16 3 H 0.05 2.21 6.40 -2.39 -0.02 2.19 16 4 C -0.51 -27.50 7.06 25.60 0.18 -27.32 16 5 H 0.04 2.40 7.96 -2.91 -0.02 2.37 16 6 C 0.03 1.43 5.45 84.66 0.46 1.89 16 7 N -0.94 -56.31 13.96 21.45 0.30 -56.01 16 8 Si 0.94 41.71 24.32 68.60 1.67 43.38 16 9 H -0.26 -11.00 6.92 99.48 0.69 -10.31 16 10 H -0.30 -13.38 7.11 99.48 0.71 -12.68 16 11 H -0.24 -9.84 6.53 99.48 0.65 -9.19 16 12 S -0.13 -5.07 20.11 -56.49 -1.14 -6.21 16 13 C -0.11 -4.22 6.11 22.71 0.14 -4.08 16 14 C -0.12 -4.96 8.85 22.39 0.20 -4.76 16 15 C -0.13 -4.32 10.04 22.28 0.22 -4.10 16 16 C -0.11 -3.27 10.04 22.29 0.22 -3.05 16 17 C -0.12 -3.68 8.70 22.37 0.19 -3.49 16 18 C 0.14 4.79 6.32 38.22 0.24 5.03 16 19 N -0.66 -17.26 5.02 -303.01 -1.52 -18.78 16 20 C 0.52 12.39 7.68 87.66 0.67 13.07 16 21 O -0.55 -16.54 13.40 -3.09 -0.04 -16.58 16 22 C -0.12 -1.89 5.68 29.85 0.17 -1.72 16 23 C 0.00 -0.06 5.13 29.85 0.15 0.09 16 24 C 0.17 3.07 7.62 138.55 1.06 4.12 16 25 N -0.30 -6.46 12.50 -51.26 -0.64 -7.10 16 26 N -0.06 -1.09 13.48 37.02 0.50 -0.59 16 27 N -0.20 -2.16 7.91 37.00 0.29 -1.87 16 28 H 0.49 0.35 8.96 -347.67 -3.12 -2.76 16 29 N -0.30 -4.35 12.36 -51.20 -0.63 -4.98 16 30 H 0.05 2.00 3.42 -2.39 -0.01 1.99 16 31 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.13 5.79 4.82 -2.91 -0.01 5.78 16 35 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 36 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 37 H 0.15 4.30 6.19 -2.91 -0.02 4.28 16 38 H 0.42 9.21 7.97 -92.70 -0.74 8.47 16 39 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.10 1.84 8.10 -2.38 -0.02 1.82 16 42 H 0.11 1.67 8.10 -2.39 -0.02 1.65 16 Total: -1.00 -73.26 361.42 0.55 -72.71 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -2.82 Total: 23.05 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 4.58 Total: -27.00 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -1.70 Total: -89.34 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.04 Total: -16.58 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.67 Total: 43.38 kcal Atomic # 16 Polarization: -5.07 SS G_CDS: -1.14 Total: -6.21 kcal Total: -73.26 0.55 -72.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362143990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.508 kcal (2) G-P(sol) polarization free energy of solvation -73.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds