Wall clock time and date at job start Wed Apr 1 2020 05:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99801 * 2 1 4 4 O 1.20829 * 119.99967 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00081 * 180.27794 * 3 2 1 6 6 C 1.52999 * 109.47038 * 185.35296 * 5 3 2 7 7 N 1.46495 * 109.24037 * 306.10887 * 6 5 3 8 8 C 1.34780 * 120.00229 * 300.95931 * 7 6 5 9 9 O 1.21279 * 119.99491 * 354.99120 * 8 7 6 10 10 C 1.50695 * 120.00233 * 174.99094 * 8 7 6 11 11 H 1.08996 * 109.47355 * 300.00141 * 10 8 7 12 12 C 1.53005 * 109.46963 * 59.99953 * 10 8 7 13 13 C 1.50696 * 109.47094 * 179.97438 * 10 8 7 14 14 H 1.08006 * 120.00225 * 359.97438 * 13 10 8 15 15 C 1.37877 * 120.00282 * 180.02562 * 13 10 8 16 16 N 1.31514 * 119.99774 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00251 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47152 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47467 * 119.99846 * 17 15 13 20 20 H 1.48508 * 109.47209 * 239.99613 * 17 15 13 21 21 C 1.52587 * 109.24141 * 186.70433 * 6 5 3 22 22 C 1.53034 * 109.98636 * 169.71654 * 21 6 5 23 23 S 1.81669 * 108.99944 * 63.64768 * 22 21 6 24 24 O 1.42105 * 108.65970 * 191.37217 * 23 22 21 25 25 O 1.42097 * 108.74598 * 60.06593 * 23 22 21 26 26 C 1.81668 * 101.30551 * 305.69987 * 23 22 21 27 27 C 1.52590 * 109.24123 * 65.55211 * 6 5 3 28 28 H 1.08996 * 109.47210 * 60.00416 * 1 2 3 29 29 H 1.09001 * 109.46634 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47534 * 299.99988 * 1 2 3 31 31 H 1.08995 * 109.46653 * 305.35009 * 5 3 2 32 32 H 1.08994 * 109.46969 * 65.35296 * 5 3 2 33 33 H 0.97000 * 120.00133 * 120.95993 * 7 6 5 34 34 H 1.09002 * 109.47226 * 60.00204 * 12 10 8 35 35 H 1.09007 * 109.46625 * 179.97438 * 12 10 8 36 36 H 1.08997 * 109.47094 * 299.99798 * 12 10 8 37 37 H 0.97001 * 120.00004 * 180.02562 * 16 15 13 38 38 H 1.09004 * 109.38557 * 289.87547 * 21 6 5 39 39 H 1.09004 * 109.38313 * 49.55893 * 21 6 5 40 40 H 1.09004 * 109.54743 * 303.79151 * 22 21 6 41 41 H 1.08995 * 109.54804 * 183.50877 * 22 21 6 42 42 H 1.08996 * 109.55367 * 294.44437 * 26 23 22 43 43 H 1.09007 * 109.54355 * 174.15316 * 26 23 22 44 44 H 1.08997 * 109.38345 * 310.43939 * 27 6 5 45 45 H 1.08994 * 109.38579 * 70.23342 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0063 6 6 4.0009 2.7356 0.1296 7 7 3.3463 3.5328 -0.9106 8 6 3.5407 3.2348 -2.2106 9 8 4.3274 2.3660 -2.5223 10 6 2.7806 3.9809 -3.2766 11 1 1.7106 3.8341 -3.1300 12 6 3.1077 5.4729 -3.1865 13 6 3.1781 3.4610 -4.6340 14 1 3.9085 2.6697 -4.7166 15 6 2.6102 3.9962 -5.7707 16 7 1.7212 4.9601 -5.6702 17 14 3.1025 3.3513 -7.4533 18 1 4.1123 2.2742 -7.2945 19 1 1.9054 2.8101 -8.1457 20 1 3.6814 4.4575 -8.2574 21 6 5.5140 2.8283 -0.0445 22 6 5.9376 4.2937 -0.1674 23 16 5.5444 5.1551 1.3830 24 8 5.6906 6.5533 1.1760 25 8 6.2538 4.5313 2.4446 26 6 3.7769 4.7757 1.5629 27 6 3.5842 3.2587 1.5011 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9638 0.6984 0.8289 32 1 3.9475 0.8681 -0.9429 33 1 2.7729 4.2753 -0.6638 34 1 4.1778 5.6197 -3.3332 35 1 2.5582 6.0125 -3.9579 36 1 2.8205 5.8492 -2.2047 37 1 1.3213 5.3365 -6.4699 38 1 6.0057 2.3808 0.8194 39 1 5.8082 2.2899 -0.9454 40 1 5.3984 4.7613 -0.9913 41 1 7.0101 4.3489 -0.3536 42 1 3.2184 5.2476 0.7546 43 1 3.4194 5.1500 2.5222 44 1 2.5352 3.0199 1.6759 45 1 4.1958 2.7862 2.2697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417440885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:27 Heat of formation + Delta-G solvation = -184.818639 kcal Electronic energy + Delta-G solvation = -31347.605311 eV Core-core repulsion = 27072.229205 eV Total energy + Delta-G solvation = -4275.376106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.06644 -39.55943 -37.38203 -36.90729 -36.16036 -36.07024 -33.82711 -32.25344 -32.02038 -31.33332 -30.04112 -27.81694 -25.44233 -25.17530 -23.93783 -23.01357 -21.23570 -20.27791 -19.32723 -18.64461 -17.62139 -17.11190 -16.67626 -16.63033 -16.42071 -16.18063 -16.09190 -15.68867 -15.03171 -14.73463 -14.58706 -13.97645 -13.96041 -13.67759 -13.45956 -13.37702 -13.05315 -12.88535 -12.55117 -12.21456 -12.16600 -12.08938 -12.06572 -11.95546 -11.83365 -11.71637 -11.54412 -11.29807 -11.06138 -10.86453 -10.76818 -10.71717 -10.69632 -10.35879 -10.26807 -10.10236 -9.98928 -9.01416 -8.66198 -8.59546 -8.36228 -6.07232 -4.10881 -0.03686 2.29551 2.57680 2.70626 3.28455 3.36501 3.42635 3.51370 3.54679 3.64252 3.84572 4.24709 4.35067 4.42684 4.52490 4.53622 4.72741 4.84340 5.04373 5.06347 5.08614 5.16587 5.26109 5.27555 5.32349 5.44657 5.50775 5.59130 5.71433 5.80993 5.85729 6.13986 6.17894 6.43970 6.55035 6.75126 6.85531 6.91613 7.43117 7.71319 7.81268 7.92935 8.08012 8.34912 8.97852 9.09994 9.54935 11.00285 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.009728 B = 0.004871 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.538404 B = 5746.545421 C = 7636.745362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.363 6.363 3 C 0.464 3.536 4 O -0.493 6.493 5 C -0.126 4.126 6 C 0.175 3.825 7 N -0.732 5.732 8 C 0.524 3.476 9 O -0.542 6.542 10 C 0.029 3.971 11 H 0.053 0.947 12 C -0.137 4.137 13 C -0.500 4.500 14 H 0.075 0.925 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.119 4.119 22 C -0.589 4.589 23 S 2.410 3.590 24 O -0.944 6.944 25 O -0.943 6.943 26 C -0.602 4.602 27 C -0.117 4.117 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.401 0.599 34 H 0.032 0.968 35 H 0.095 0.905 36 H 0.011 0.989 37 H 0.260 0.740 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.102 0.898 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 -5.541 16.263 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.280 6.280 3 C 0.307 3.693 4 O -0.379 6.379 5 C -0.165 4.165 6 C 0.088 3.912 7 N -0.389 5.389 8 C 0.315 3.685 9 O -0.418 6.418 10 C 0.008 3.992 11 H 0.071 0.929 12 C -0.195 4.195 13 C -0.539 4.539 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.158 4.158 22 C -0.719 4.719 23 S 2.593 3.407 24 O -0.942 6.942 25 O -0.940 6.940 26 C -0.731 4.731 27 C -0.155 4.155 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.152 0.848 33 H 0.238 0.762 34 H 0.052 0.948 35 H 0.113 0.887 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.136 0.864 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.121 0.879 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.940 -5.253 16.464 17.390 hybrid contribution -1.009 -0.209 -1.418 1.753 sum 0.931 -5.462 15.046 16.034 Atomic orbital electron populations 1.23227 0.76456 1.03414 1.02621 1.86490 1.23379 1.33773 1.84365 1.23570 0.91918 0.81400 0.72435 1.90646 1.66979 1.35925 1.44379 1.21853 0.88358 0.98406 1.07854 1.20056 0.92515 0.90177 0.88491 1.46555 1.51479 1.35393 1.05439 1.21981 0.81342 0.82858 0.82333 1.90453 1.36099 1.33307 1.81956 1.18878 0.95991 0.92503 0.91824 0.92926 1.21800 1.00410 0.97866 0.99418 1.21153 1.24216 1.19694 0.88801 0.90690 1.24956 0.94948 0.95010 0.99367 1.69879 1.28411 1.26212 1.28924 0.86423 0.78386 0.78883 0.83682 1.19599 1.21120 1.21053 1.21712 0.93758 0.93688 1.06658 1.30073 1.11695 1.08625 1.21527 1.08235 0.78522 0.75873 0.78104 1.93595 1.85213 1.29071 1.86276 1.93562 1.69913 1.78209 1.52288 1.30182 1.25669 1.05245 1.12019 1.21691 1.06266 0.91263 0.96271 0.91607 0.88405 0.92132 0.87107 0.84821 0.76205 0.94840 0.88670 0.96990 0.92996 0.89338 0.86438 0.84152 0.84610 0.84590 0.84455 0.87933 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.44 16 2 O -0.36 -4.68 10.57 -39.25 -0.41 -5.09 16 3 C 0.46 6.37 7.28 36.01 0.26 6.63 16 4 O -0.49 -7.58 12.91 -18.75 -0.24 -7.82 16 5 C -0.13 -1.50 4.51 -27.88 -0.13 -1.62 16 6 C 0.18 2.09 0.27 -132.24 -0.04 2.05 16 7 N -0.73 -11.03 1.92 -48.00 -0.09 -11.12 16 8 C 0.52 10.46 5.98 -10.99 -0.07 10.39 16 9 O -0.54 -11.72 11.81 5.56 0.07 -11.66 16 10 C 0.03 0.69 2.65 -92.93 -0.25 0.44 16 11 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 12 C -0.14 -3.01 8.86 37.16 0.33 -2.68 16 13 C -0.50 -13.56 8.37 -34.44 -0.29 -13.84 16 14 H 0.07 2.13 6.75 -52.48 -0.35 1.77 16 15 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 16 N -0.89 -24.72 11.32 55.43 0.63 -24.10 16 17 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 C -0.12 -1.35 4.23 -26.93 -0.11 -1.46 16 22 C -0.59 -6.73 6.14 37.18 0.23 -6.50 16 23 S 2.41 27.19 5.30 -107.50 -0.57 26.62 16 24 O -0.94 -14.15 18.10 -57.82 -1.05 -15.19 16 25 O -0.94 -12.45 17.95 -57.82 -1.04 -13.49 16 26 C -0.60 -5.51 6.14 37.18 0.23 -5.28 16 27 C -0.12 -1.10 4.54 -26.92 -0.12 -1.22 16 28 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.13 1.87 6.36 -51.93 -0.33 1.54 16 33 H 0.40 5.66 5.81 -40.82 -0.24 5.42 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 2.35 6.07 -51.92 -0.32 2.04 16 36 H 0.01 0.21 7.46 -51.93 -0.39 -0.18 16 37 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.09 0.76 8.02 -51.93 -0.42 0.34 16 39 H 0.12 1.58 6.26 -51.93 -0.32 1.25 16 40 H 0.14 1.82 6.83 -51.93 -0.35 1.46 16 41 H 0.14 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.14 1.23 6.21 -51.93 -0.32 0.90 16 43 H 0.14 0.95 8.14 -51.92 -0.42 0.53 16 44 H 0.10 1.01 6.05 -51.93 -0.31 0.70 16 45 H 0.10 0.70 8.01 -51.93 -0.42 0.28 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -35.42 362.83 -7.53 -42.95 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.29 Total: 7.28 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 1.02 Total: -10.17 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.54 Total: -35.22 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -2.68 Total: -53.26 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 27.19 SS G_CDS: -0.57 Total: 26.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.42 -7.53 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417440885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.867 kcal (2) G-P(sol) polarization free energy of solvation -35.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds