Wall clock time and date at job start Wed Apr 1 2020 05:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99801 * 2 1 4 4 O 1.20829 * 119.99967 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00081 * 180.27794 * 3 2 1 6 6 C 1.52999 * 109.47038 * 185.35296 * 5 3 2 7 7 N 1.46495 * 109.24037 * 306.10887 * 6 5 3 8 8 C 1.34780 * 120.00229 * 300.95931 * 7 6 5 9 9 O 1.21279 * 119.99491 * 354.99120 * 8 7 6 10 10 C 1.50695 * 120.00233 * 174.99094 * 8 7 6 11 11 H 1.08996 * 109.47355 * 300.00141 * 10 8 7 12 12 C 1.53005 * 109.46963 * 59.99953 * 10 8 7 13 13 C 1.50696 * 109.47094 * 179.97438 * 10 8 7 14 14 H 1.08006 * 120.00225 * 359.97438 * 13 10 8 15 15 C 1.37877 * 120.00282 * 180.02562 * 13 10 8 16 16 N 1.31514 * 119.99774 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00251 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47152 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47467 * 119.99846 * 17 15 13 20 20 H 1.48508 * 109.47209 * 239.99613 * 17 15 13 21 21 C 1.52587 * 109.24141 * 186.70433 * 6 5 3 22 22 C 1.53034 * 109.98636 * 169.71654 * 21 6 5 23 23 S 1.81669 * 108.99944 * 63.64768 * 22 21 6 24 24 O 1.42105 * 108.65970 * 191.37217 * 23 22 21 25 25 O 1.42097 * 108.74598 * 60.06593 * 23 22 21 26 26 C 1.81668 * 101.30551 * 305.69987 * 23 22 21 27 27 C 1.52590 * 109.24123 * 65.55211 * 6 5 3 28 28 H 1.08996 * 109.47210 * 60.00416 * 1 2 3 29 29 H 1.09001 * 109.46634 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47534 * 299.99988 * 1 2 3 31 31 H 1.08995 * 109.46653 * 305.35009 * 5 3 2 32 32 H 1.08994 * 109.46969 * 65.35296 * 5 3 2 33 33 H 0.97000 * 120.00133 * 120.95993 * 7 6 5 34 34 H 1.09002 * 109.47226 * 60.00204 * 12 10 8 35 35 H 1.09007 * 109.46625 * 179.97438 * 12 10 8 36 36 H 1.08997 * 109.47094 * 299.99798 * 12 10 8 37 37 H 0.97001 * 120.00004 * 180.02562 * 16 15 13 38 38 H 1.09004 * 109.38557 * 289.87547 * 21 6 5 39 39 H 1.09004 * 109.38313 * 49.55893 * 21 6 5 40 40 H 1.09004 * 109.54743 * 303.79151 * 22 21 6 41 41 H 1.08995 * 109.54804 * 183.50877 * 22 21 6 42 42 H 1.08996 * 109.55367 * 294.44437 * 26 23 22 43 43 H 1.09007 * 109.54355 * 174.15316 * 26 23 22 44 44 H 1.08997 * 109.38345 * 310.43939 * 27 6 5 45 45 H 1.08994 * 109.38579 * 70.23342 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0063 6 6 4.0009 2.7356 0.1296 7 7 3.3463 3.5328 -0.9106 8 6 3.5407 3.2348 -2.2106 9 8 4.3274 2.3660 -2.5223 10 6 2.7806 3.9809 -3.2766 11 1 1.7106 3.8341 -3.1300 12 6 3.1077 5.4729 -3.1865 13 6 3.1781 3.4610 -4.6340 14 1 3.9085 2.6697 -4.7166 15 6 2.6102 3.9962 -5.7707 16 7 1.7212 4.9601 -5.6702 17 14 3.1025 3.3513 -7.4533 18 1 4.1123 2.2742 -7.2945 19 1 1.9054 2.8101 -8.1457 20 1 3.6814 4.4575 -8.2574 21 6 5.5140 2.8283 -0.0445 22 6 5.9376 4.2937 -0.1674 23 16 5.5444 5.1551 1.3830 24 8 5.6906 6.5533 1.1760 25 8 6.2538 4.5313 2.4446 26 6 3.7769 4.7757 1.5629 27 6 3.5842 3.2587 1.5011 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9638 0.6984 0.8289 32 1 3.9475 0.8681 -0.9429 33 1 2.7729 4.2753 -0.6638 34 1 4.1778 5.6197 -3.3332 35 1 2.5582 6.0125 -3.9579 36 1 2.8205 5.8492 -2.2047 37 1 1.3213 5.3365 -6.4699 38 1 6.0057 2.3808 0.8194 39 1 5.8082 2.2899 -0.9454 40 1 5.3984 4.7613 -0.9913 41 1 7.0101 4.3489 -0.3536 42 1 3.2184 5.2476 0.7546 43 1 3.4194 5.1500 2.5222 44 1 2.5352 3.0199 1.6759 45 1 4.1958 2.7862 2.2697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417440885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:26 Heat of formation + Delta-G solvation = -210.597227 kcal Electronic energy + Delta-G solvation = -31348.723154 eV Core-core repulsion = 27072.229205 eV Total energy + Delta-G solvation = -4276.493950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.16577 -40.73372 -38.62818 -37.96477 -37.20248 -37.07537 -35.74041 -33.68280 -32.85735 -32.47037 -31.66803 -28.70100 -27.20491 -26.33587 -24.79561 -24.64994 -22.24321 -21.62572 -20.51777 -19.66840 -18.62705 -18.36507 -18.17543 -17.66859 -17.57475 -17.47071 -17.19804 -16.74975 -16.46471 -16.12424 -15.82689 -15.19493 -15.06537 -14.85524 -14.54236 -14.50406 -14.29559 -14.16397 -13.79860 -13.44771 -13.21727 -13.14085 -13.08479 -13.01157 -12.94441 -12.83049 -12.76106 -12.62088 -12.60119 -12.54384 -12.18695 -12.16286 -12.00372 -11.79850 -11.66090 -11.35819 -11.02192 -11.00200 -10.55958 -10.08605 -9.91483 -8.14713 -6.24843 -0.92388 1.25251 1.37757 1.40502 1.52777 1.71834 1.78363 1.97180 2.32489 2.50283 2.70267 2.93551 3.15374 3.40606 3.46147 3.60912 3.67813 3.91635 3.96052 4.20698 4.23266 4.31621 4.33798 4.41823 4.47926 4.54640 4.66412 4.71553 4.74645 4.81550 4.89366 4.91878 4.97800 4.99777 5.05893 5.22555 5.46363 5.51030 5.64777 5.76699 5.95654 6.22639 6.74082 6.79896 6.89221 7.41611 7.59292 8.91214 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.009728 B = 0.004871 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.538404 B = 5746.545421 C = 7636.745362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.459 3.541 4 O -0.516 6.516 5 C -0.127 4.127 6 C 0.168 3.832 7 N -0.716 5.716 8 C 0.530 3.470 9 O -0.563 6.563 10 C 0.022 3.978 11 H 0.027 0.973 12 C -0.127 4.127 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.016 3.984 16 N -0.914 5.914 17 Si 0.953 3.047 18 H -0.275 1.275 19 H -0.279 1.279 20 H -0.277 1.277 21 C -0.119 4.119 22 C -0.595 4.595 23 S 2.429 3.571 24 O -0.985 6.985 25 O -0.959 6.959 26 C -0.592 4.592 27 C -0.114 4.114 28 H 0.045 0.955 29 H 0.128 0.872 30 H 0.071 0.929 31 H 0.156 0.844 32 H 0.111 0.889 33 H 0.406 0.594 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.262 0.738 38 H 0.124 0.876 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.148 0.852 42 H 0.138 0.862 43 H 0.169 0.831 44 H 0.105 0.895 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.295 -6.373 18.352 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.286 6.286 3 C 0.303 3.697 4 O -0.404 6.404 5 C -0.165 4.165 6 C 0.082 3.918 7 N -0.371 5.371 8 C 0.319 3.681 9 O -0.442 6.442 10 C 0.001 3.999 11 H 0.045 0.955 12 C -0.185 4.185 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.779 3.221 18 H -0.200 1.200 19 H -0.204 1.204 20 H -0.203 1.203 21 C -0.158 4.158 22 C -0.725 4.725 23 S 2.614 3.386 24 O -0.982 6.982 25 O -0.956 6.956 26 C -0.723 4.723 27 C -0.152 4.152 28 H 0.064 0.936 29 H 0.146 0.854 30 H 0.090 0.910 31 H 0.174 0.826 32 H 0.129 0.871 33 H 0.244 0.756 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.142 0.858 39 H 0.113 0.887 40 H 0.141 0.859 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.187 0.813 44 H 0.124 0.876 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.069 -6.078 18.583 19.660 hybrid contribution -1.118 -0.006 -2.029 2.316 sum 0.951 -6.083 16.554 17.662 Atomic orbital electron populations 1.23456 0.75203 1.05362 1.02191 1.86485 1.24698 1.33397 1.84032 1.23961 0.92643 0.81323 0.71771 1.90631 1.67639 1.36580 1.45578 1.21931 0.87264 0.98707 1.08562 1.20412 0.92691 0.89992 0.88712 1.46282 1.50834 1.35419 1.04543 1.21145 0.81032 0.82386 0.83493 1.90449 1.36996 1.34029 1.82711 1.18775 0.94970 0.93982 0.92218 0.95524 1.21625 0.99718 0.96604 1.00550 1.21332 1.23975 1.19480 0.90983 0.92659 1.25623 0.95030 0.95282 1.02380 1.69979 1.28924 1.26787 1.29695 0.85573 0.78070 0.78332 0.80081 1.19991 1.20442 1.20284 1.21737 0.93428 0.93412 1.07203 1.30111 1.12549 1.08682 1.21145 1.07580 0.79280 0.74527 0.77178 1.93545 1.86395 1.31619 1.86682 1.93533 1.71266 1.78151 1.52649 1.30111 1.22808 1.05413 1.13979 1.21765 1.07100 0.91283 0.95046 0.93563 0.85371 0.91023 0.82634 0.87054 0.75607 0.95104 0.91452 0.93313 0.92856 0.85773 0.88708 0.85941 0.83395 0.84424 0.81323 0.87618 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.79 16 2 O -0.37 -8.97 10.57 -51.40 -0.54 -9.52 16 3 C 0.46 11.93 7.28 71.24 0.52 12.45 16 4 O -0.52 -15.28 12.91 21.95 0.28 -15.00 16 5 C -0.13 -2.74 4.51 29.85 0.13 -2.60 16 6 C 0.17 3.64 0.27 3.33 0.00 3.64 16 7 N -0.72 -20.97 1.92 -424.18 -0.81 -21.79 16 8 C 0.53 21.46 5.98 87.66 0.52 21.98 16 9 O -0.56 -24.92 11.81 -3.03 -0.04 -24.95 16 10 C 0.02 1.06 2.65 -12.29 -0.03 1.02 16 11 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 12 C -0.13 -5.66 8.86 71.98 0.64 -5.02 16 13 C -0.52 -29.04 8.37 25.60 0.21 -28.83 16 14 H 0.06 3.25 6.75 -2.91 -0.02 3.23 16 15 C 0.02 0.86 5.30 84.65 0.45 1.31 16 16 N -0.91 -51.51 11.32 21.45 0.24 -51.27 16 17 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 C -0.12 -2.45 4.23 30.47 0.13 -2.32 16 22 C -0.59 -12.83 6.14 71.99 0.44 -12.38 16 23 S 2.43 49.66 5.30 -56.49 -0.30 49.36 16 24 O -0.99 -28.51 18.10 -127.38 -2.31 -30.82 16 25 O -0.96 -22.64 17.95 -127.38 -2.29 -24.92 16 26 C -0.59 -8.84 6.14 71.99 0.44 -8.40 16 27 C -0.11 -1.71 4.54 30.47 0.14 -1.57 16 28 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 29 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 31 H 0.16 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.11 3.04 6.36 -2.39 -0.02 3.03 16 33 H 0.41 10.98 5.81 -92.71 -0.54 10.44 16 34 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 3.40 6.07 -2.38 -0.01 3.39 16 36 H 0.05 1.74 7.46 -2.39 -0.02 1.73 16 37 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.12 1.67 8.02 -2.38 -0.02 1.65 16 39 H 0.09 2.48 6.26 -2.38 -0.01 2.46 16 40 H 0.12 3.13 6.83 -2.39 -0.02 3.11 16 41 H 0.15 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.14 2.10 6.21 -2.39 -0.01 2.09 16 43 H 0.17 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.11 1.67 6.05 -2.39 -0.01 1.66 16 45 H 0.13 1.18 8.01 -2.39 -0.02 1.16 16 Total: -1.00 -78.89 362.83 1.55 -77.34 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.49 Total: 24.00 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 4.79 Total: -18.93 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -0.57 Total: -73.06 kcal Atomic # 8 Polarization: -100.32 SS G_CDS: -4.89 Total: -105.21 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 49.66 SS G_CDS: -0.30 Total: 49.36 kcal Total: -78.89 1.55 -77.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417440885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.258 kcal (2) G-P(sol) polarization free energy of solvation -78.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds