Wall clock time and date at job start Wed Apr 1 2020 05:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34221 * 117.00008 * 2 1 4 4 O 1.20827 * 120.00489 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99887 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46939 * 185.22880 * 5 3 2 7 7 N 1.46500 * 109.23588 * 305.56790 * 6 5 3 8 8 C 1.34775 * 120.00046 * 295.91717 * 7 6 5 9 9 O 1.21283 * 120.00321 * 5.12974 * 8 7 6 10 10 C 1.50700 * 120.00134 * 185.12570 * 8 7 6 11 11 H 1.08998 * 109.46865 * 60.00215 * 10 8 7 12 12 C 1.53005 * 109.47000 * 300.00369 * 10 8 7 13 13 C 1.50694 * 109.47398 * 180.02562 * 10 8 7 14 14 H 1.08007 * 119.99903 * 5.47248 * 13 10 8 15 15 C 1.37878 * 120.00316 * 185.47374 * 13 10 8 16 16 N 1.31516 * 119.99715 * 5.21482 * 15 13 10 17 17 Si 1.86795 * 120.00212 * 185.21469 * 15 13 10 18 18 H 1.48503 * 109.47450 * 94.99636 * 17 15 13 19 19 H 1.48503 * 109.47138 * 214.99687 * 17 15 13 20 20 H 1.48502 * 109.47361 * 334.99844 * 17 15 13 21 21 C 1.52581 * 109.21524 * 64.99250 * 6 5 3 22 22 C 1.53037 * 109.98878 * 190.26660 * 21 6 5 23 23 S 1.81674 * 108.99666 * 296.35233 * 22 21 6 24 24 O 1.42102 * 108.66398 * 299.96862 * 23 22 21 25 25 O 1.42098 * 108.74794 * 168.65860 * 23 22 21 26 26 C 1.81672 * 101.30822 * 54.29459 * 23 22 21 27 27 C 1.52589 * 109.23875 * 186.13179 * 6 5 3 28 28 H 1.08999 * 109.47506 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47441 * 299.99623 * 1 2 3 30 30 H 1.09000 * 109.47273 * 59.99749 * 1 2 3 31 31 H 1.08992 * 109.47431 * 65.22676 * 5 3 2 32 32 H 1.09003 * 109.46876 * 305.22246 * 5 3 2 33 33 H 0.96996 * 120.00050 * 115.92763 * 7 6 5 34 34 H 1.09004 * 109.47177 * 294.98731 * 12 10 8 35 35 H 1.08996 * 109.46992 * 54.98667 * 12 10 8 36 36 H 1.09001 * 109.47059 * 174.98937 * 12 10 8 37 37 H 0.97006 * 120.00044 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.38437 * 310.42278 * 21 6 5 39 39 H 1.09008 * 109.38352 * 70.10419 * 21 6 5 40 40 H 1.08997 * 109.54714 * 176.49673 * 22 21 6 41 41 H 1.08994 * 109.54705 * 56.20236 * 22 21 6 42 42 H 1.09000 * 109.55055 * 185.84095 * 26 23 22 43 43 H 1.09003 * 109.54587 * 65.55484 * 26 23 22 44 44 H 1.09003 * 109.38283 * 289.90581 * 27 6 5 45 45 H 1.09001 * 109.38914 * 49.69397 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0005 2.7360 0.1310 7 7 3.3602 3.5266 -0.9231 8 6 3.6501 3.2851 -2.2170 9 8 4.3684 2.3540 -2.5139 10 6 3.0819 4.1718 -3.2948 11 1 3.4176 5.1967 -3.1366 12 6 1.5535 4.1221 -3.2430 13 6 3.5542 3.6904 -4.6424 14 1 4.1277 2.7784 -4.7194 15 6 3.2544 4.4141 -5.7770 16 7 2.6459 5.5755 -5.6745 17 14 3.7123 3.7449 -7.4598 18 1 2.5495 3.0262 -8.0400 19 1 4.0951 4.8687 -8.3520 20 1 4.8565 2.8079 -7.3254 21 6 3.5657 3.2683 1.4932 22 6 3.7591 4.7854 1.5481 23 16 5.5294 5.1620 1.3897 24 8 6.2239 4.5425 2.4636 25 8 5.6819 6.5586 1.1765 26 6 5.9427 4.2903 -0.1496 27 6 5.5159 2.8261 -0.0231 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.9513 0.8640 -0.9338 32 1 3.9605 0.7017 0.8387 33 1 2.7276 4.2239 -0.6899 34 1 1.2142 3.1158 -3.4890 35 1 1.2152 4.3847 -2.2406 36 1 1.1423 4.8302 -3.9624 37 1 2.4346 6.0845 -6.4728 38 1 2.5141 3.0317 1.6553 39 1 4.1650 2.7987 2.2733 40 1 3.3889 5.1661 2.5000 41 1 3.2122 5.2526 0.7292 42 1 7.0177 4.3434 -0.3215 43 1 5.4152 4.7531 -0.9837 44 1 5.9953 2.3837 0.8502 45 1 5.8216 2.2831 -0.9175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417440887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:30 Heat of formation + Delta-G solvation = -186.677437 kcal Electronic energy + Delta-G solvation = -31335.375812 eV Core-core repulsion = 27059.919102 eV Total energy + Delta-G solvation = -4275.456710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.07636 -39.58331 -37.37437 -36.89760 -36.17034 -36.05126 -33.78048 -32.25772 -32.00905 -31.32627 -30.10581 -27.85063 -25.43577 -25.13694 -23.93266 -23.02733 -21.24320 -20.30266 -19.32376 -18.63759 -17.63042 -17.09440 -16.67023 -16.60905 -16.48327 -16.20455 -16.06798 -15.68823 -15.00366 -14.71660 -14.57149 -14.05200 -13.88362 -13.66104 -13.54008 -13.35264 -13.04949 -12.85531 -12.52451 -12.19846 -12.17053 -12.10805 -12.04889 -11.95360 -11.88916 -11.68800 -11.51803 -11.31944 -11.04026 -10.91162 -10.86741 -10.70909 -10.66009 -10.37909 -10.28009 -10.08930 -9.96523 -9.04053 -8.67580 -8.53897 -8.40593 -6.09047 -4.09725 -0.01498 2.27625 2.59951 2.68322 3.29881 3.36866 3.41943 3.51767 3.55389 3.64077 3.86645 4.25666 4.35988 4.43346 4.53577 4.53810 4.74733 4.84286 5.02764 5.05034 5.09507 5.12647 5.26436 5.28124 5.32201 5.44839 5.47896 5.60050 5.71463 5.81947 5.87043 6.13259 6.16558 6.41413 6.57713 6.76437 6.84756 6.90675 7.40396 7.62458 7.78926 7.92264 8.02593 8.34864 8.98539 9.09382 9.55283 11.01118 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.009298 B = 0.004978 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.725922 B = 5623.125492 C = 7617.645362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.363 6.363 3 C 0.465 3.535 4 O -0.494 6.494 5 C -0.126 4.126 6 C 0.176 3.824 7 N -0.734 5.734 8 C 0.523 3.477 9 O -0.541 6.541 10 C 0.027 3.973 11 H 0.058 0.942 12 C -0.125 4.125 13 C -0.503 4.503 14 H 0.074 0.926 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.272 1.272 21 C -0.117 4.117 22 C -0.601 4.601 23 S 2.411 3.589 24 O -0.943 6.943 25 O -0.944 6.944 26 C -0.590 4.590 27 C -0.120 4.120 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.110 0.890 33 H 0.402 0.598 34 H 0.032 0.968 35 H 0.018 0.982 36 H 0.075 0.925 37 H 0.261 0.739 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.090 0.910 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 -6.985 16.355 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.280 6.280 3 C 0.308 3.692 4 O -0.381 6.381 5 C -0.165 4.165 6 C 0.088 3.912 7 N -0.390 5.390 8 C 0.314 3.686 9 O -0.417 6.417 10 C 0.006 3.994 11 H 0.076 0.924 12 C -0.183 4.183 13 C -0.541 4.541 14 H 0.092 0.908 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.155 4.155 22 C -0.730 4.730 23 S 2.593 3.407 24 O -0.940 6.940 25 O -0.941 6.941 26 C -0.720 4.720 27 C -0.159 4.159 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.128 0.872 33 H 0.239 0.761 34 H 0.051 0.949 35 H 0.037 0.963 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.158 0.842 44 H 0.108 0.892 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.295 -6.676 16.572 17.869 hybrid contribution -1.029 -0.249 -1.471 1.813 sum -1.324 -6.924 15.101 16.666 Atomic orbital electron populations 1.23218 0.76520 1.03394 1.02566 1.86494 1.23325 1.33828 1.84377 1.23584 0.91928 0.81347 0.72319 1.90630 1.67013 1.35918 1.44493 1.21886 0.88272 0.98528 1.07775 1.20057 0.92652 0.90151 0.88356 1.46585 1.47454 1.39518 1.05480 1.21995 0.78973 0.85236 0.82410 1.90453 1.37973 1.31027 1.82260 1.18904 0.93493 0.95192 0.91806 0.92431 1.21666 0.96993 1.01031 0.98622 1.21085 1.34140 1.09517 0.89360 0.90753 1.24952 0.95227 0.94614 0.99336 1.69934 1.41985 1.12232 1.29163 0.86486 0.78803 0.78563 0.83643 1.20800 1.21315 1.19712 1.21697 1.06238 0.91266 0.96348 1.30168 1.25705 1.05168 1.11985 1.08217 0.78551 0.75878 0.78022 1.93560 1.70576 1.78354 1.51539 1.93597 1.85116 1.29174 1.86218 1.30082 1.11818 1.08603 1.21492 1.21687 0.93661 0.93837 1.06672 0.88425 0.92111 0.91712 0.84813 0.87224 0.76050 0.94922 0.96318 0.90566 0.92939 0.87908 0.88629 0.84517 0.84530 0.84544 0.84151 0.89202 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.53 10.56 -39.23 -0.41 -4.95 16 3 C 0.47 6.19 7.31 36.01 0.26 6.46 16 4 O -0.49 -7.30 12.78 -18.75 -0.24 -7.54 16 5 C -0.13 -1.47 4.59 -27.88 -0.13 -1.60 16 6 C 0.18 2.08 0.27 -132.24 -0.04 2.04 16 7 N -0.73 -10.95 2.06 -48.00 -0.10 -11.04 16 8 C 0.52 10.35 5.71 -10.99 -0.06 10.29 16 9 O -0.54 -11.67 11.82 5.55 0.07 -11.60 16 10 C 0.03 0.63 2.52 -92.92 -0.23 0.40 16 11 H 0.06 1.41 8.12 -51.93 -0.42 0.99 16 12 C -0.12 -2.78 8.91 37.16 0.33 -2.45 16 13 C -0.50 -13.58 8.29 -34.44 -0.29 -13.87 16 14 H 0.07 2.11 6.78 -52.48 -0.36 1.75 16 15 C 0.06 1.63 5.29 -17.82 -0.09 1.53 16 16 N -0.89 -24.80 11.99 55.43 0.66 -24.14 16 17 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.12 -1.10 4.51 -26.93 -0.12 -1.22 16 22 C -0.60 -5.52 6.14 37.18 0.23 -5.29 16 23 S 2.41 27.62 5.31 -107.50 -0.57 27.05 16 24 O -0.94 -12.59 17.94 -57.82 -1.04 -13.62 16 25 O -0.94 -14.42 18.11 -57.82 -1.05 -15.47 16 26 C -0.59 -6.89 6.12 37.18 0.23 -6.66 16 27 C -0.12 -1.37 4.19 -26.92 -0.11 -1.48 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 31 H 0.13 1.85 6.37 -51.93 -0.33 1.52 16 32 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.40 5.64 5.76 -40.82 -0.24 5.40 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.02 0.35 7.32 -51.93 -0.38 -0.03 16 36 H 0.08 1.86 6.85 -51.93 -0.36 1.50 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.10 1.00 5.98 -51.93 -0.31 0.69 16 39 H 0.10 0.70 8.01 -51.92 -0.42 0.28 16 40 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.14 1.23 6.30 -51.93 -0.33 0.91 16 42 H 0.14 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.14 1.87 6.60 -51.93 -0.34 1.52 16 44 H 0.09 0.78 8.01 -51.93 -0.42 0.36 16 45 H 0.12 1.59 6.25 -51.93 -0.32 1.27 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -35.48 363.51 -7.49 -42.97 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.31 Total: 6.92 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 1.04 Total: -10.42 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.57 Total: -35.18 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -2.67 Total: -53.18 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 27.62 SS G_CDS: -0.57 Total: 27.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.48 -7.49 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417440887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.708 kcal (2) G-P(sol) polarization free energy of solvation -35.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds