Wall clock time and date at job start Wed Apr 1 2020 05:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34221 * 117.00008 * 2 1 4 4 O 1.20827 * 120.00489 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99887 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46939 * 185.22880 * 5 3 2 7 7 N 1.46500 * 109.23588 * 305.56790 * 6 5 3 8 8 C 1.34775 * 120.00046 * 295.91717 * 7 6 5 9 9 O 1.21283 * 120.00321 * 5.12974 * 8 7 6 10 10 C 1.50700 * 120.00134 * 185.12570 * 8 7 6 11 11 H 1.08998 * 109.46865 * 60.00215 * 10 8 7 12 12 C 1.53005 * 109.47000 * 300.00369 * 10 8 7 13 13 C 1.50694 * 109.47398 * 180.02562 * 10 8 7 14 14 H 1.08007 * 119.99903 * 5.47248 * 13 10 8 15 15 C 1.37878 * 120.00316 * 185.47374 * 13 10 8 16 16 N 1.31516 * 119.99715 * 5.21482 * 15 13 10 17 17 Si 1.86795 * 120.00212 * 185.21469 * 15 13 10 18 18 H 1.48503 * 109.47450 * 94.99636 * 17 15 13 19 19 H 1.48503 * 109.47138 * 214.99687 * 17 15 13 20 20 H 1.48502 * 109.47361 * 334.99844 * 17 15 13 21 21 C 1.52581 * 109.21524 * 64.99250 * 6 5 3 22 22 C 1.53037 * 109.98878 * 190.26660 * 21 6 5 23 23 S 1.81674 * 108.99666 * 296.35233 * 22 21 6 24 24 O 1.42102 * 108.66398 * 299.96862 * 23 22 21 25 25 O 1.42098 * 108.74794 * 168.65860 * 23 22 21 26 26 C 1.81672 * 101.30822 * 54.29459 * 23 22 21 27 27 C 1.52589 * 109.23875 * 186.13179 * 6 5 3 28 28 H 1.08999 * 109.47506 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47441 * 299.99623 * 1 2 3 30 30 H 1.09000 * 109.47273 * 59.99749 * 1 2 3 31 31 H 1.08992 * 109.47431 * 65.22676 * 5 3 2 32 32 H 1.09003 * 109.46876 * 305.22246 * 5 3 2 33 33 H 0.96996 * 120.00050 * 115.92763 * 7 6 5 34 34 H 1.09004 * 109.47177 * 294.98731 * 12 10 8 35 35 H 1.08996 * 109.46992 * 54.98667 * 12 10 8 36 36 H 1.09001 * 109.47059 * 174.98937 * 12 10 8 37 37 H 0.97006 * 120.00044 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.38437 * 310.42278 * 21 6 5 39 39 H 1.09008 * 109.38352 * 70.10419 * 21 6 5 40 40 H 1.08997 * 109.54714 * 176.49673 * 22 21 6 41 41 H 1.08994 * 109.54705 * 56.20236 * 22 21 6 42 42 H 1.09000 * 109.55055 * 185.84095 * 26 23 22 43 43 H 1.09003 * 109.54587 * 65.55484 * 26 23 22 44 44 H 1.09003 * 109.38283 * 289.90581 * 27 6 5 45 45 H 1.09001 * 109.38914 * 49.69397 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0005 2.7360 0.1310 7 7 3.3602 3.5266 -0.9231 8 6 3.6501 3.2851 -2.2170 9 8 4.3684 2.3540 -2.5139 10 6 3.0819 4.1718 -3.2948 11 1 3.4176 5.1967 -3.1366 12 6 1.5535 4.1221 -3.2430 13 6 3.5542 3.6904 -4.6424 14 1 4.1277 2.7784 -4.7194 15 6 3.2544 4.4141 -5.7770 16 7 2.6459 5.5755 -5.6745 17 14 3.7123 3.7449 -7.4598 18 1 2.5495 3.0262 -8.0400 19 1 4.0951 4.8687 -8.3520 20 1 4.8565 2.8079 -7.3254 21 6 3.5657 3.2683 1.4932 22 6 3.7591 4.7854 1.5481 23 16 5.5294 5.1620 1.3897 24 8 6.2239 4.5425 2.4636 25 8 5.6819 6.5586 1.1765 26 6 5.9427 4.2903 -0.1496 27 6 5.5159 2.8261 -0.0231 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.9513 0.8640 -0.9338 32 1 3.9605 0.7017 0.8387 33 1 2.7276 4.2239 -0.6899 34 1 1.2142 3.1158 -3.4890 35 1 1.2152 4.3847 -2.2406 36 1 1.1423 4.8302 -3.9624 37 1 2.4346 6.0845 -6.4728 38 1 2.5141 3.0317 1.6553 39 1 4.1650 2.7987 2.2733 40 1 3.3889 5.1661 2.5000 41 1 3.2122 5.2526 0.7292 42 1 7.0177 4.3434 -0.3215 43 1 5.4152 4.7531 -0.9837 44 1 5.9953 2.3837 0.8502 45 1 5.8216 2.2831 -0.9175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417440887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:29 Heat of formation + Delta-G solvation = -212.516273 kcal Electronic energy + Delta-G solvation = -31336.496268 eV Core-core repulsion = 27059.919102 eV Total energy + Delta-G solvation = -4276.577166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.15189 -40.73092 -38.62127 -37.96564 -37.17849 -37.07925 -35.69303 -33.70524 -32.86136 -32.45577 -31.71878 -28.69221 -27.17333 -26.32960 -24.80662 -24.66602 -22.22324 -21.63110 -20.51693 -19.67660 -18.60982 -18.35824 -18.17450 -17.65057 -17.55673 -17.49698 -17.17612 -16.76224 -16.45011 -16.09007 -15.80092 -15.30110 -14.93365 -14.84600 -14.62658 -14.48293 -14.21918 -14.18429 -13.78022 -13.56728 -13.21301 -13.11691 -13.07328 -12.96033 -12.93023 -12.84711 -12.76597 -12.73294 -12.56547 -12.54853 -12.27819 -12.15366 -11.98238 -11.78771 -11.64064 -11.33381 -11.04654 -10.97810 -10.54933 -10.11669 -9.90536 -8.17504 -6.23781 -0.92568 1.27791 1.38659 1.40530 1.51525 1.71617 1.79584 1.97941 2.32384 2.50049 2.70023 2.93990 3.15884 3.41029 3.47190 3.61017 3.67198 3.92576 3.96761 4.20750 4.24054 4.32996 4.35421 4.42009 4.48121 4.54601 4.66543 4.71431 4.72865 4.85090 4.89288 4.92235 4.96190 5.00337 5.01425 5.21112 5.48261 5.49264 5.64860 5.73312 5.85445 6.18794 6.75309 6.81968 6.90211 7.41753 7.59556 8.91593 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.009298 B = 0.004978 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.725922 B = 5623.125492 C = 7617.645362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.461 3.539 4 O -0.514 6.514 5 C -0.126 4.126 6 C 0.169 3.831 7 N -0.717 5.717 8 C 0.530 3.470 9 O -0.563 6.563 10 C 0.018 3.982 11 H 0.041 0.959 12 C -0.109 4.109 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.018 3.982 16 N -0.915 5.915 17 Si 0.951 3.049 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.275 1.275 21 C -0.114 4.114 22 C -0.589 4.589 23 S 2.429 3.571 24 O -0.958 6.958 25 O -0.987 6.987 26 C -0.597 4.597 27 C -0.120 4.120 28 H 0.126 0.874 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.111 0.889 32 H 0.154 0.846 33 H 0.408 0.592 34 H 0.020 0.980 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.263 0.737 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.169 0.831 41 H 0.138 0.862 42 H 0.146 0.854 43 H 0.119 0.881 44 H 0.126 0.874 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.492 -8.160 18.471 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.287 6.287 3 C 0.305 3.695 4 O -0.403 6.403 5 C -0.164 4.164 6 C 0.082 3.918 7 N -0.372 5.372 8 C 0.319 3.681 9 O -0.442 6.442 10 C -0.003 4.003 11 H 0.059 0.941 12 C -0.167 4.167 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.182 4.182 16 N -0.555 5.555 17 Si 0.777 3.223 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.200 1.200 21 C -0.152 4.152 22 C -0.721 4.721 23 S 2.614 3.386 24 O -0.956 6.956 25 O -0.984 6.984 26 C -0.726 4.726 27 C -0.158 4.158 28 H 0.145 0.855 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.171 0.829 33 H 0.246 0.754 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.147 0.853 40 H 0.187 0.813 41 H 0.156 0.844 42 H 0.165 0.835 43 H 0.138 0.862 44 H 0.144 0.856 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.699 -7.846 18.716 20.307 hybrid contribution -0.948 0.073 -2.087 2.294 sum -1.647 -7.773 16.629 18.430 Atomic orbital electron populations 1.23453 0.75185 1.05303 1.02265 1.86488 1.24710 1.33423 1.84044 1.23893 0.92512 0.81323 0.71740 1.90612 1.67586 1.36490 1.45593 1.21934 0.87444 0.98582 1.08472 1.20401 0.92681 0.90162 0.88517 1.46307 1.46807 1.39512 1.04618 1.21163 0.78931 0.84485 0.83535 1.90449 1.38976 1.31728 1.83008 1.18830 0.94275 0.95026 0.92181 0.94108 1.21448 0.96127 0.99530 0.99602 1.21275 1.34110 1.08920 0.91535 0.92694 1.25605 0.95331 0.94895 1.02322 1.70018 1.42641 1.12905 1.29910 0.85646 0.78477 0.78059 0.80101 1.20155 1.20589 1.20003 1.21779 1.07170 0.91101 0.95181 1.30084 1.22528 1.05503 1.13966 1.07582 0.79477 0.74486 0.77036 1.93531 1.71986 1.78257 1.51798 1.93543 1.86400 1.31848 1.86633 1.30125 1.12538 1.08885 1.21101 1.21725 0.93561 0.93326 1.07234 0.85535 0.91054 0.93350 0.87057 0.82866 0.75437 0.96043 0.93297 0.93012 0.92833 0.87335 0.85306 0.81292 0.84374 0.83541 0.86222 0.85622 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.37 -8.49 10.56 -51.33 -0.54 -9.04 16 3 C 0.46 11.34 7.31 71.24 0.52 11.87 16 4 O -0.51 -14.21 12.78 21.96 0.28 -13.93 16 5 C -0.13 -2.65 4.59 29.85 0.14 -2.51 16 6 C 0.17 3.62 0.27 3.33 0.00 3.62 16 7 N -0.72 -20.78 2.06 -424.17 -0.88 -21.65 16 8 C 0.53 21.24 5.71 87.66 0.50 21.74 16 9 O -0.56 -24.83 11.82 -3.04 -0.04 -24.87 16 10 C 0.02 0.87 2.52 -12.29 -0.03 0.84 16 11 H 0.04 2.08 8.12 -2.39 -0.02 2.06 16 12 C -0.11 -4.91 8.91 71.98 0.64 -4.27 16 13 C -0.52 -28.95 8.29 25.60 0.21 -28.73 16 14 H 0.05 3.22 6.78 -2.91 -0.02 3.20 16 15 C 0.02 0.97 5.29 84.65 0.45 1.41 16 16 N -0.92 -51.73 11.99 21.45 0.26 -51.47 16 17 Si 0.95 44.48 29.54 68.60 2.03 46.50 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 C -0.11 -1.69 4.51 30.47 0.14 -1.56 16 22 C -0.59 -8.93 6.14 71.99 0.44 -8.49 16 23 S 2.43 51.56 5.31 -56.49 -0.30 51.26 16 24 O -0.96 -23.15 17.94 -127.38 -2.29 -25.43 16 25 O -0.99 -29.74 18.11 -127.38 -2.31 -32.05 16 26 C -0.60 -13.53 6.12 71.99 0.44 -13.09 16 27 C -0.12 -2.52 4.19 30.47 0.13 -2.40 16 28 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 30 H 0.05 1.01 8.13 -2.39 -0.02 0.99 16 31 H 0.11 2.98 6.37 -2.39 -0.02 2.96 16 32 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.41 10.90 5.76 -92.71 -0.53 10.37 16 34 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 1.85 7.32 -2.39 -0.02 1.83 16 36 H 0.05 2.57 6.85 -2.39 -0.02 2.55 16 37 H 0.26 14.16 8.31 -92.70 -0.77 13.38 16 38 H 0.11 1.65 5.98 -2.39 -0.01 1.64 16 39 H 0.13 1.17 8.01 -2.38 -0.02 1.15 16 40 H 0.17 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.14 2.15 6.30 -2.39 -0.02 2.14 16 42 H 0.15 2.92 8.14 -2.39 -0.02 2.90 16 43 H 0.12 3.25 6.60 -2.39 -0.02 3.24 16 44 H 0.13 1.73 8.01 -2.39 -0.02 1.72 16 45 H 0.09 2.51 6.25 -2.39 -0.01 2.49 16 Total: -1.00 -78.56 363.51 1.49 -77.08 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.49 Total: 23.41 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 4.77 Total: -19.82 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -0.62 Total: -73.12 kcal Atomic # 8 Polarization: -100.42 SS G_CDS: -4.89 Total: -105.31 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 51.56 SS G_CDS: -0.30 Total: 51.26 kcal Total: -78.56 1.49 -77.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417440887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.438 kcal (2) G-P(sol) polarization free energy of solvation -78.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds