Wall clock time and date at job start Wed Apr 1 2020 04:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99885 * 2 1 4 4 O 1.20821 * 120.00395 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99650 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46890 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.47240 * 180.02562 * 6 5 3 8 8 C 1.37099 * 120.00245 * 274.15376 * 7 6 5 9 9 H 1.07998 * 120.00441 * 126.68092 * 8 7 6 10 10 C 1.38948 * 119.99719 * 306.69262 * 8 7 6 11 11 N 1.31417 * 120.00326 * 3.68676 * 10 8 7 12 12 Si 1.86795 * 120.00007 * 183.69284 * 10 8 7 13 13 H 1.48500 * 109.47247 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47347 * 119.99464 * 12 10 8 15 15 H 1.48501 * 109.47197 * 239.99626 * 12 10 8 16 16 C 1.34775 * 120.00296 * 94.42376 * 7 6 5 17 17 O 1.21298 * 119.99756 * 353.80520 * 16 7 6 18 18 C 1.50691 * 120.00375 * 173.80166 * 16 7 6 19 19 C 1.53003 * 109.47520 * 311.57103 * 18 16 7 20 20 C 1.52999 * 109.47366 * 71.57144 * 18 16 7 21 21 S 1.81406 * 109.47367 * 191.57100 * 18 16 7 22 22 O 1.42093 * 108.57940 * 294.48895 * 21 18 16 23 23 O 1.42101 * 108.57630 * 65.51327 * 21 18 16 24 24 C 1.81404 * 101.92022 * 179.97438 * 21 18 16 25 25 C 1.53001 * 117.49954 * 253.61961 * 24 21 18 26 26 C 1.53001 * 60.00082 * 252.51443 * 25 24 21 27 27 H 1.09001 * 109.46746 * 299.99780 * 1 2 3 28 28 H 1.09000 * 109.46884 * 59.99777 * 1 2 3 29 29 H 1.08991 * 109.47160 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46902 * 60.00497 * 5 3 2 31 31 H 1.09001 * 109.47164 * 299.99984 * 5 3 2 32 32 H 1.09000 * 109.47157 * 59.99836 * 6 5 3 33 33 H 1.09007 * 109.46848 * 300.00218 * 6 5 3 34 34 H 0.96998 * 120.00284 * 180.02562 * 11 10 8 35 35 H 1.09005 * 109.46730 * 69.33699 * 19 18 16 36 36 H 1.08996 * 109.47831 * 189.34292 * 19 18 16 37 37 H 1.09000 * 109.46787 * 309.34531 * 19 18 16 38 38 H 1.08998 * 109.46953 * 57.82809 * 20 18 16 39 39 H 1.08991 * 109.47669 * 177.83205 * 20 18 16 40 40 H 1.08997 * 109.47074 * 297.83608 * 20 18 16 41 41 H 1.08993 * 115.55172 * 39.33424 * 24 21 18 42 42 H 1.09000 * 117.49926 * 0.02562 * 25 24 21 43 43 H 1.08993 * 117.49586 * 145.02281 * 25 24 21 44 44 H 1.08992 * 117.49601 * 252.51097 * 26 25 24 45 45 H 1.08999 * 117.49720 * 107.49033 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8187 0.0011 8 6 6.1523 2.7683 1.1852 9 1 6.9451 2.0471 1.3184 10 6 5.8307 3.6451 2.2140 11 7 4.8193 4.4733 2.0795 12 14 6.8361 3.6466 3.7883 13 1 7.9114 2.6272 3.6900 14 1 7.4417 4.9879 3.9877 15 1 5.9542 3.3257 4.9392 16 6 6.1314 2.9444 -1.1626 17 8 5.5327 2.8811 -2.2156 18 6 7.6223 3.1635 -1.1556 19 6 7.9688 4.2824 -0.1712 20 6 8.3254 1.8733 -0.7291 21 16 8.1728 3.6304 -2.8198 22 8 7.9592 2.5297 -3.6927 23 8 7.6092 4.8936 -3.1453 24 6 9.9585 3.8398 -2.5788 25 6 10.5067 5.2682 -2.5640 26 6 10.7753 4.3581 -3.7642 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9564 0.7806 -0.8892 31 1 3.9558 0.7809 0.8908 32 1 3.6101 3.2359 0.8910 33 1 3.6107 3.2364 -0.8890 34 1 4.5950 5.0856 2.7976 35 1 7.7914 3.9378 0.8476 36 1 9.0180 4.5548 -0.2853 37 1 7.3435 5.1518 -0.3747 38 1 8.0482 1.0669 -1.4080 39 1 9.4050 2.0201 -0.7611 40 1 8.0240 1.6136 0.2856 41 1 10.4327 3.1116 -1.9209 42 1 9.7943 6.0821 -2.6987 43 1 11.3416 5.4799 -1.8961 44 1 11.7870 3.9712 -3.8859 45 1 10.2397 4.5733 -4.6888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462271507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:45 Heat of formation + Delta-G solvation = -149.667018 kcal Electronic energy + Delta-G solvation = -30608.891392 eV Core-core repulsion = 26335.039574 eV Total energy + Delta-G solvation = -4273.851818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.07401 -39.23453 -37.15876 -36.38204 -36.21750 -35.52649 -35.14124 -34.32044 -32.13542 -30.47367 -27.51373 -26.89879 -25.46014 -24.22983 -23.28054 -22.66026 -22.30708 -20.36379 -19.50018 -18.28255 -17.74195 -17.08033 -16.84064 -16.24809 -16.16745 -15.77987 -15.61410 -15.37275 -14.90007 -14.51473 -14.30922 -13.95704 -13.65909 -13.43290 -13.33575 -12.91792 -12.63650 -12.53323 -12.20672 -12.13039 -11.90493 -11.85607 -11.82264 -11.53946 -11.52450 -11.43993 -11.19791 -11.14345 -11.04250 -10.96917 -10.87696 -10.68404 -10.53844 -10.49132 -10.34151 -10.10261 -10.01915 -9.68982 -9.19469 -8.73888 -7.62835 -6.51736 -4.45768 0.42421 2.67279 2.95636 3.02731 3.06075 3.06813 3.09012 3.36226 3.54506 3.89616 4.00298 4.35521 4.51243 4.65303 4.74335 4.79603 4.88304 5.21592 5.25746 5.31460 5.31943 5.37712 5.39952 5.46940 5.57859 5.64364 5.71657 5.82029 5.85313 5.89241 5.92757 6.01352 6.24648 6.27041 6.35160 6.50955 6.72442 6.81543 7.06839 7.20574 7.41539 7.78525 8.12796 8.18423 8.81168 9.10923 9.62957 10.46434 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.004349 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.641279 B = 6436.595404 C = 8171.368619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.124 4.124 6 C 0.123 3.877 7 N -0.423 5.423 8 C -0.351 4.351 9 H 0.097 0.903 10 C 0.054 3.946 11 N -0.850 5.850 12 Si 0.906 3.094 13 H -0.264 1.264 14 H -0.275 1.275 15 H -0.278 1.278 16 C 0.513 3.487 17 O -0.589 6.589 18 C -0.525 4.525 19 C -0.140 4.140 20 C -0.141 4.141 21 S 2.471 3.529 22 O -0.929 6.929 23 O -0.932 6.932 24 C -0.679 4.679 25 C -0.126 4.126 26 C -0.129 4.129 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.067 0.933 34 H 0.275 0.725 35 H 0.122 0.878 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.102 0.898 41 H 0.159 0.841 42 H 0.119 0.881 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.479 -3.998 -0.582 8.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.163 4.163 6 C -0.001 4.001 7 N -0.140 5.140 8 C -0.479 4.479 9 H 0.115 0.885 10 C -0.155 4.155 11 N -0.484 5.484 12 Si 0.732 3.268 13 H -0.188 1.188 14 H -0.200 1.200 15 H -0.203 1.203 16 C 0.299 3.701 17 O -0.474 6.474 18 C -0.619 4.619 19 C -0.198 4.198 20 C -0.198 4.198 21 S 2.650 3.350 22 O -0.926 6.926 23 O -0.929 6.929 24 C -0.785 4.785 25 C -0.164 4.164 26 C -0.167 4.167 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.139 0.861 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.140 0.860 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.177 0.823 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.330 -3.459 -1.738 7.419 hybrid contribution 0.662 -0.210 1.797 1.927 sum 6.992 -3.669 0.059 7.896 Atomic orbital electron populations 1.23165 0.77361 1.03016 1.02340 1.86538 1.22752 1.34416 1.84666 1.24059 0.92385 0.80890 0.71732 1.90652 1.67277 1.36220 1.45042 1.21881 0.85883 1.03235 1.05273 1.21406 0.81957 0.91172 1.05536 1.43014 1.04255 1.62258 1.04453 1.19473 1.19006 1.18618 0.90798 0.88535 1.25704 0.95918 0.94272 0.99603 1.69734 1.24976 1.20038 1.33639 0.86195 0.80145 0.78819 0.81671 1.18771 1.20033 1.20337 1.19332 0.85974 0.79630 0.85139 1.90700 1.69161 1.56411 1.31135 1.29802 1.03912 1.06657 1.21513 1.21939 0.99413 0.95143 1.03263 1.21872 0.98554 0.93468 1.05952 1.06873 0.75489 0.75377 0.77297 1.93497 1.83317 1.54423 1.61361 1.93504 1.74453 1.42964 1.81982 1.32483 1.25121 1.07699 1.13207 1.22856 1.03183 0.89712 1.00604 1.22728 1.00821 1.01403 0.91773 0.92163 0.92173 0.88638 0.88488 0.87538 0.86127 0.91485 0.91449 0.85993 0.93062 0.91204 0.91170 0.91782 0.87958 0.82318 0.86315 0.87130 0.87053 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.00 10.57 -39.25 -0.41 -6.42 16 3 C 0.47 8.95 7.96 36.01 0.29 9.24 16 4 O -0.51 -11.01 15.73 -18.75 -0.29 -11.30 16 5 C -0.12 -2.42 6.12 -27.88 -0.17 -2.59 16 6 C 0.12 2.87 4.34 -4.04 -0.02 2.85 16 7 N -0.42 -9.83 2.45 -114.81 -0.28 -10.11 16 8 C -0.35 -7.67 5.44 -14.93 -0.08 -7.75 16 9 H 0.10 1.93 5.09 -52.49 -0.27 1.67 16 10 C 0.05 1.20 4.80 -17.47 -0.08 1.11 16 11 N -0.85 -20.72 11.25 55.50 0.62 -20.10 16 12 Si 0.91 17.11 29.09 -169.99 -4.95 12.17 16 13 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 14 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 15 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 16 C 0.51 12.17 6.44 -10.99 -0.07 12.10 16 17 O -0.59 -15.79 15.20 -0.50 -0.01 -15.80 16 18 C -0.53 -10.10 0.59 -91.77 -0.05 -10.15 16 19 C -0.14 -2.50 7.73 37.16 0.29 -2.22 16 20 C -0.14 -2.19 8.09 37.16 0.30 -1.89 16 21 S 2.47 47.11 3.47 -107.50 -0.37 46.74 16 22 O -0.93 -20.35 17.59 -61.89 -1.09 -21.44 16 23 O -0.93 -20.49 17.13 -57.83 -0.99 -21.48 16 24 C -0.68 -8.78 4.85 -26.73 -0.13 -8.91 16 25 C -0.13 -1.38 9.89 -26.73 -0.26 -1.65 16 26 C -0.13 -1.41 10.30 -26.73 -0.28 -1.68 16 27 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 31 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 32 H 0.12 3.03 5.73 -51.93 -0.30 2.73 16 33 H 0.07 1.70 7.34 -51.92 -0.38 1.32 16 34 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 35 H 0.12 2.27 4.27 -51.93 -0.22 2.04 16 36 H 0.05 0.70 6.79 -51.93 -0.35 0.34 16 37 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 38 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 39 H 0.06 0.73 6.26 -51.93 -0.33 0.41 16 40 H 0.10 1.59 5.06 -51.93 -0.26 1.33 16 41 H 0.16 1.63 6.46 -51.93 -0.34 1.29 16 42 H 0.12 1.40 7.57 -51.93 -0.39 1.00 16 43 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -33.19 375.15 -7.52 -40.71 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.20 Total: 11.40 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 0.79 Total: -10.02 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.34 Total: -30.21 kcal Atomic # 8 Polarization: -73.64 SS G_CDS: -2.80 Total: -76.44 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -4.95 Total: 12.17 kcal Atomic # 16 Polarization: 47.11 SS G_CDS: -0.37 Total: 46.74 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.19 -7.52 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462271507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.954 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds