Wall clock time and date at job start Wed Apr 1 2020 04:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99885 * 2 1 4 4 O 1.20821 * 120.00395 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99650 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46890 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.47240 * 180.02562 * 6 5 3 8 8 C 1.37099 * 120.00245 * 274.15376 * 7 6 5 9 9 H 1.07998 * 120.00441 * 126.68092 * 8 7 6 10 10 C 1.38948 * 119.99719 * 306.69262 * 8 7 6 11 11 N 1.31417 * 120.00326 * 3.68676 * 10 8 7 12 12 Si 1.86795 * 120.00007 * 183.69284 * 10 8 7 13 13 H 1.48500 * 109.47247 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47347 * 119.99464 * 12 10 8 15 15 H 1.48501 * 109.47197 * 239.99626 * 12 10 8 16 16 C 1.34775 * 120.00296 * 94.42376 * 7 6 5 17 17 O 1.21298 * 119.99756 * 353.80520 * 16 7 6 18 18 C 1.50691 * 120.00375 * 173.80166 * 16 7 6 19 19 C 1.53003 * 109.47520 * 311.57103 * 18 16 7 20 20 C 1.52999 * 109.47366 * 71.57144 * 18 16 7 21 21 S 1.81406 * 109.47367 * 191.57100 * 18 16 7 22 22 O 1.42093 * 108.57940 * 294.48895 * 21 18 16 23 23 O 1.42101 * 108.57630 * 65.51327 * 21 18 16 24 24 C 1.81404 * 101.92022 * 179.97438 * 21 18 16 25 25 C 1.53001 * 117.49954 * 253.61961 * 24 21 18 26 26 C 1.53001 * 60.00082 * 252.51443 * 25 24 21 27 27 H 1.09001 * 109.46746 * 299.99780 * 1 2 3 28 28 H 1.09000 * 109.46884 * 59.99777 * 1 2 3 29 29 H 1.08991 * 109.47160 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46902 * 60.00497 * 5 3 2 31 31 H 1.09001 * 109.47164 * 299.99984 * 5 3 2 32 32 H 1.09000 * 109.47157 * 59.99836 * 6 5 3 33 33 H 1.09007 * 109.46848 * 300.00218 * 6 5 3 34 34 H 0.96998 * 120.00284 * 180.02562 * 11 10 8 35 35 H 1.09005 * 109.46730 * 69.33699 * 19 18 16 36 36 H 1.08996 * 109.47831 * 189.34292 * 19 18 16 37 37 H 1.09000 * 109.46787 * 309.34531 * 19 18 16 38 38 H 1.08998 * 109.46953 * 57.82809 * 20 18 16 39 39 H 1.08991 * 109.47669 * 177.83205 * 20 18 16 40 40 H 1.08997 * 109.47074 * 297.83608 * 20 18 16 41 41 H 1.08993 * 115.55172 * 39.33424 * 24 21 18 42 42 H 1.09000 * 117.49926 * 0.02562 * 25 24 21 43 43 H 1.08993 * 117.49586 * 145.02281 * 25 24 21 44 44 H 1.08992 * 117.49601 * 252.51097 * 26 25 24 45 45 H 1.08999 * 117.49720 * 107.49033 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8187 0.0011 8 6 6.1523 2.7683 1.1852 9 1 6.9451 2.0471 1.3184 10 6 5.8307 3.6451 2.2140 11 7 4.8193 4.4733 2.0795 12 14 6.8361 3.6466 3.7883 13 1 7.9114 2.6272 3.6900 14 1 7.4417 4.9879 3.9877 15 1 5.9542 3.3257 4.9392 16 6 6.1314 2.9444 -1.1626 17 8 5.5327 2.8811 -2.2156 18 6 7.6223 3.1635 -1.1556 19 6 7.9688 4.2824 -0.1712 20 6 8.3254 1.8733 -0.7291 21 16 8.1728 3.6304 -2.8198 22 8 7.9592 2.5297 -3.6927 23 8 7.6092 4.8936 -3.1453 24 6 9.9585 3.8398 -2.5788 25 6 10.5067 5.2682 -2.5640 26 6 10.7753 4.3581 -3.7642 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9564 0.7806 -0.8892 31 1 3.9558 0.7809 0.8908 32 1 3.6101 3.2359 0.8910 33 1 3.6107 3.2364 -0.8890 34 1 4.5950 5.0856 2.7976 35 1 7.7914 3.9378 0.8476 36 1 9.0180 4.5548 -0.2853 37 1 7.3435 5.1518 -0.3747 38 1 8.0482 1.0669 -1.4080 39 1 9.4050 2.0201 -0.7611 40 1 8.0240 1.6136 0.2856 41 1 10.4327 3.1116 -1.9209 42 1 9.7943 6.0821 -2.6987 43 1 11.3416 5.4799 -1.8961 44 1 11.7870 3.9712 -3.8859 45 1 10.2397 4.5733 -4.6888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462271507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:44 Heat of formation + Delta-G solvation = -173.683919 kcal Electronic energy + Delta-G solvation = -30609.932843 eV Core-core repulsion = 26335.039574 eV Total energy + Delta-G solvation = -4274.893269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.63376 -40.95938 -38.27894 -37.75090 -37.72460 -37.16360 -36.85293 -35.83587 -33.89101 -32.15694 -28.74823 -28.21146 -27.20336 -25.78804 -24.45423 -23.84927 -23.46181 -21.89917 -21.25677 -19.72864 -19.31709 -18.60521 -18.10895 -17.76387 -17.66587 -17.36278 -17.20528 -16.79534 -16.30387 -15.89219 -15.83612 -15.66021 -15.12974 -14.82191 -14.53630 -14.42289 -14.08331 -13.99663 -13.80095 -13.64441 -13.31081 -13.21886 -13.17295 -13.04940 -12.98900 -12.76741 -12.66819 -12.51439 -12.49707 -12.16792 -11.99915 -11.98575 -11.94802 -11.88099 -11.80249 -11.64617 -11.54826 -11.12208 -10.95338 -10.46239 -9.46277 -8.24778 -6.24153 -0.97172 1.10210 1.45319 1.52952 1.60752 1.65333 1.80018 1.84529 2.26173 2.32671 2.56916 2.99609 3.04983 3.22737 3.55505 3.74754 3.76638 3.86613 3.91438 4.02208 4.05314 4.14533 4.25624 4.28899 4.29901 4.57374 4.58807 4.64892 4.66625 4.71474 4.79486 4.86719 4.90638 4.94087 4.97859 5.10426 5.17212 5.24577 5.39533 5.60969 5.67199 5.99442 6.38048 6.66838 7.04915 7.30491 7.86228 8.75682 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.004349 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.641279 B = 6436.595404 C = 8171.368619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.538 6.538 5 C -0.113 4.113 6 C 0.124 3.876 7 N -0.426 5.426 8 C -0.352 4.352 9 H 0.123 0.877 10 C 0.013 3.987 11 N -0.895 5.895 12 Si 0.972 3.028 13 H -0.233 1.233 14 H -0.277 1.277 15 H -0.288 1.288 16 C 0.490 3.510 17 O -0.637 6.637 18 C -0.524 4.524 19 C -0.137 4.137 20 C -0.142 4.142 21 S 2.444 3.556 22 O -0.975 6.975 23 O -0.984 6.984 24 C -0.662 4.662 25 C -0.120 4.120 26 C -0.125 4.125 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.139 0.861 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.028 0.972 34 H 0.272 0.728 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.033 0.967 38 H 0.061 0.939 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.202 0.798 42 H 0.102 0.898 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.748 -5.557 1.212 13.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.428 6.428 5 C -0.152 4.152 6 C 0.000 4.000 7 N -0.143 5.143 8 C -0.479 4.479 9 H 0.140 0.860 10 C -0.191 4.191 11 N -0.530 5.530 12 Si 0.794 3.206 13 H -0.156 1.156 14 H -0.203 1.203 15 H -0.215 1.215 16 C 0.278 3.722 17 O -0.526 6.526 18 C -0.617 4.617 19 C -0.194 4.194 20 C -0.199 4.199 21 S 2.631 3.369 22 O -0.972 6.972 23 O -0.981 6.981 24 C -0.775 4.775 25 C -0.157 4.157 26 C -0.163 4.163 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.157 0.843 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.120 0.880 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.135 0.865 40 H 0.122 0.878 41 H 0.219 0.781 42 H 0.120 0.880 43 H 0.172 0.828 44 H 0.171 0.829 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.528 -5.070 0.056 11.685 hybrid contribution -0.699 0.293 1.186 1.407 sum 9.829 -4.776 1.242 10.999 Atomic orbital electron populations 1.23583 0.74777 1.05904 1.02403 1.86506 1.25161 1.32301 1.83852 1.23865 0.92176 0.81284 0.71006 1.90640 1.67886 1.37534 1.46766 1.21656 0.86761 1.00571 1.06186 1.21181 0.82887 0.93310 1.02593 1.43247 1.04068 1.61705 1.05232 1.19993 1.18978 1.18953 0.89966 0.85986 1.26539 0.96415 0.93517 1.02668 1.69904 1.27089 1.21286 1.34726 0.85191 0.79106 0.79309 0.76959 1.15576 1.20277 1.21477 1.20201 0.88481 0.79095 0.84410 1.90655 1.70873 1.58376 1.32673 1.29790 1.00632 1.09066 1.22258 1.21943 1.01823 0.93296 1.02372 1.22008 1.01393 0.91056 1.05460 1.07090 0.78864 0.73873 0.77032 1.93434 1.85726 1.55318 1.62733 1.93438 1.77668 1.44197 1.82794 1.31969 1.18059 1.10857 1.16585 1.23179 1.03510 0.87767 1.01281 1.23119 1.02005 1.00251 0.90962 0.92005 0.92343 0.84296 0.88289 0.85625 0.88003 0.95310 0.91775 0.86367 0.87932 0.94781 0.91990 0.86469 0.87772 0.78084 0.87954 0.82794 0.82872 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.83 16 2 O -0.36 -11.72 10.57 -51.39 -0.54 -12.26 16 3 C 0.47 18.78 7.96 71.24 0.57 19.35 16 4 O -0.54 -24.76 15.73 21.98 0.35 -24.41 16 5 C -0.11 -4.61 6.12 29.85 0.18 -4.43 16 6 C 0.12 6.22 4.34 86.38 0.38 6.59 16 7 N -0.43 -20.63 2.45 -635.54 -1.56 -22.19 16 8 C -0.35 -15.27 5.44 84.04 0.46 -14.81 16 9 H 0.12 4.59 5.09 -2.91 -0.01 4.58 16 10 C 0.01 0.58 4.80 84.93 0.41 0.99 16 11 N -0.89 -45.32 11.25 21.66 0.24 -45.08 16 12 Si 0.97 33.76 29.09 68.60 2.00 35.76 16 13 H -0.23 -6.95 7.11 99.48 0.71 -6.25 16 14 H -0.28 -9.70 7.11 99.48 0.71 -8.99 16 15 H -0.29 -10.50 7.11 99.48 0.71 -9.79 16 16 C 0.49 24.36 6.44 87.65 0.56 24.93 16 17 O -0.64 -36.86 15.20 2.69 0.04 -36.82 16 18 C -0.52 -19.93 0.59 -11.54 -0.01 -19.93 16 19 C -0.14 -4.71 7.73 71.98 0.56 -4.15 16 20 C -0.14 -4.00 8.09 71.98 0.58 -3.42 16 21 S 2.44 93.84 3.47 -56.49 -0.20 93.64 16 22 O -0.98 -44.17 17.59 -123.49 -2.17 -46.34 16 23 O -0.98 -45.70 17.13 -127.37 -2.18 -47.88 16 24 C -0.66 -14.30 4.85 30.60 0.15 -14.15 16 25 C -0.12 -2.07 9.89 30.60 0.30 -1.76 16 26 C -0.13 -2.17 10.30 30.60 0.32 -1.86 16 27 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 28 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 29 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.10 3.99 8.14 -2.39 -0.02 3.97 16 31 H 0.13 4.59 8.14 -2.39 -0.02 4.57 16 32 H 0.10 5.49 5.73 -2.39 -0.01 5.47 16 33 H 0.03 1.60 7.34 -2.38 -0.02 1.59 16 34 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 35 H 0.12 4.15 4.27 -2.38 -0.01 4.14 16 36 H 0.10 2.38 6.79 -2.39 -0.02 2.36 16 37 H 0.03 1.38 8.11 -2.39 -0.02 1.36 16 38 H 0.06 1.86 8.12 -2.39 -0.02 1.84 16 39 H 0.12 2.00 6.26 -2.39 -0.01 1.98 16 40 H 0.10 2.89 5.06 -2.39 -0.01 2.87 16 41 H 0.20 2.66 6.46 -2.39 -0.02 2.65 16 42 H 0.10 2.19 7.57 -2.39 -0.02 2.17 16 43 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -82.46 375.15 2.65 -79.81 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: 1.02 Total: 36.60 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 5.65 Total: -10.83 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -1.31 Total: -67.27 kcal Atomic # 8 Polarization: -163.20 SS G_CDS: -4.51 Total: -167.71 kcal Atomic # 14 Polarization: 33.76 SS G_CDS: 2.00 Total: 35.76 kcal Atomic # 16 Polarization: 93.84 SS G_CDS: -0.20 Total: 93.64 kcal Total: -82.46 2.65 -79.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462271507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.872 kcal (2) G-P(sol) polarization free energy of solvation -82.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds