Wall clock time and date at job start Wed Apr 1 2020 04:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46678 * 2 1 4 4 C 1.53001 * 109.47300 * 240.00140 * 2 1 3 5 5 O 1.45198 * 109.47358 * 119.99919 * 2 1 3 6 6 C 1.34227 * 117.00078 * 60.00005 * 5 2 1 7 7 O 1.20822 * 119.99778 * 0.02562 * 6 5 2 8 8 C 1.50701 * 120.00006 * 179.97438 * 6 5 2 9 9 C 1.50699 * 109.23809 * 299.44513 * 8 6 5 10 10 O 1.21297 * 120.00116 * 105.55182 * 9 8 6 11 11 N 1.34773 * 119.99980 * 285.54092 * 9 8 6 12 12 C 1.37100 * 120.00162 * 180.02562 * 11 9 8 13 13 H 1.08006 * 119.99603 * 0.02562 * 12 11 9 14 14 C 1.38945 * 120.00201 * 180.02562 * 12 11 9 15 15 N 1.31418 * 119.99950 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00126 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47219 * 90.00126 * 16 14 12 18 18 H 1.48497 * 109.47093 * 210.00502 * 16 14 12 19 19 H 1.48506 * 109.46888 * 330.00111 * 16 14 12 20 20 C 1.52585 * 109.24124 * 180.02562 * 8 6 5 21 21 C 1.53044 * 109.90171 * 169.80831 * 20 8 6 22 22 S 1.81458 * 109.10084 * 63.69446 * 21 20 8 23 23 O 1.42104 * 108.67622 * 191.31488 * 22 21 20 24 24 O 1.42102 * 108.77602 * 59.98012 * 22 21 20 25 25 C 1.81667 * 101.26322 * 305.62867 * 22 21 20 26 26 C 1.52591 * 109.20972 * 58.86693 * 8 6 5 27 27 H 1.09002 * 109.47437 * 299.99558 * 1 2 3 28 28 H 1.08998 * 109.47147 * 60.00083 * 1 2 3 29 29 H 1.08999 * 109.46858 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46668 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47264 * 299.99845 * 3 2 1 32 32 H 1.08998 * 109.47111 * 60.00470 * 3 2 1 33 33 H 1.08999 * 109.47084 * 299.99762 * 4 2 1 34 34 H 1.08998 * 109.47203 * 59.99811 * 4 2 1 35 35 H 1.09001 * 109.47220 * 179.97438 * 4 2 1 36 36 H 0.97001 * 120.00053 * 0.02562 * 11 9 8 37 37 H 0.96998 * 119.99643 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.38587 * 289.91009 * 20 8 6 39 39 H 1.08998 * 109.38752 * 49.70276 * 20 8 6 40 40 H 1.08990 * 109.55034 * 183.45523 * 21 20 8 41 41 H 1.09005 * 109.54284 * 303.74029 * 21 20 8 42 42 H 1.09002 * 109.54921 * 294.45578 * 25 22 21 43 43 H 1.08999 * 109.55434 * 174.16316 * 25 22 21 44 44 H 1.08994 * 109.38275 * 310.42502 * 26 8 6 45 45 H 1.08997 * 109.38349 * 70.21195 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6534 -1.9684 1.3379 7 8 0.9568 -2.5027 0.5079 8 6 2.1184 -2.7436 2.5436 9 6 3.6246 -2.7920 2.5523 10 8 4.2489 -2.1065 3.3344 11 7 4.2780 -3.5969 1.6912 12 6 5.6482 -3.6413 1.6994 13 1 6.2041 -3.0314 2.3962 14 6 6.3218 -4.4708 0.8113 15 7 7.6353 -4.5137 0.8195 16 14 5.3605 -5.5261 -0.3935 17 1 5.1444 -4.7685 -1.6523 18 1 6.1254 -6.7648 -0.6863 19 1 4.0473 -5.8841 0.2005 20 6 1.5705 -4.1658 2.4689 21 6 2.2318 -5.0357 3.5405 22 16 1.7851 -4.4000 5.1803 23 8 2.6013 -5.0375 6.1533 24 8 0.3717 -4.4470 5.3197 25 6 2.2979 -2.6630 5.0392 26 6 1.6304 -2.0443 3.8090 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 3.7787 -4.1449 1.0656 37 1 8.1055 -5.0930 0.1997 38 1 0.4930 -4.1474 2.6322 39 1 1.7802 -4.5831 1.4841 40 1 1.8823 -6.0634 3.4427 41 1 3.3146 -5.0041 3.4188 42 1 3.3813 -2.6101 4.9312 43 1 1.9921 -2.1186 5.9326 44 1 1.8801 -0.9847 3.7559 45 1 0.5495 -2.1577 3.8910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001632150877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:09 Heat of formation + Delta-G solvation = -208.587832 kcal Electronic energy + Delta-G solvation = -31691.236446 eV Core-core repulsion = 27414.829630 eV Total energy + Delta-G solvation = -4276.406816 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.63708 -40.91657 -38.46880 -38.09466 -37.14669 -36.98304 -36.22562 -35.08700 -34.01904 -32.65285 -30.24352 -28.38638 -28.30208 -27.16118 -24.95140 -24.30036 -23.28772 -21.33269 -21.03312 -20.21332 -19.58788 -18.75806 -18.22301 -17.68297 -17.41260 -17.28566 -17.20648 -16.73727 -16.39487 -16.15196 -15.69800 -15.24191 -15.20387 -15.03970 -14.77575 -14.58522 -14.43004 -14.15883 -13.91729 -13.53953 -13.36320 -13.28443 -13.18883 -13.12986 -13.10250 -13.02445 -12.96307 -12.87921 -12.85346 -12.58330 -12.51028 -12.45825 -12.17001 -12.06091 -11.83471 -11.58314 -11.42038 -11.17224 -11.04274 -10.48298 -10.32828 -8.51568 -6.12078 -0.97776 0.84338 1.17851 1.23073 1.32560 1.34862 1.63119 1.77906 2.10959 2.47589 2.61230 2.90354 3.03328 3.25007 3.28505 3.42264 3.51303 3.70806 3.77994 3.79042 3.92459 3.94053 4.03823 4.19057 4.31595 4.49621 4.55398 4.61693 4.70332 4.75972 4.78508 4.82916 4.86004 4.87313 4.91852 5.07898 5.10360 5.24732 5.28987 5.38816 5.43029 5.84045 6.39081 6.60382 6.71837 7.19851 7.66355 8.63992 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.007667 B = 0.006989 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3651.349948 B = 4005.447587 C = 6428.692090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.100 3.900 3 C -0.138 4.138 4 C -0.185 4.185 5 O -0.350 6.350 6 C 0.489 3.511 7 O -0.496 6.496 8 C -0.087 4.087 9 C 0.457 3.543 10 O -0.578 6.578 11 N -0.574 5.574 12 C -0.327 4.327 13 H 0.076 0.924 14 C 0.003 3.997 15 N -0.915 5.915 16 Si 0.931 3.069 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.231 1.231 20 C -0.098 4.098 21 C -0.617 4.617 22 S 2.430 3.570 23 O -0.982 6.982 24 O -0.951 6.951 25 C -0.609 4.609 26 C -0.080 4.080 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.385 0.615 37 H 0.282 0.718 38 H 0.134 0.866 39 H 0.104 0.896 40 H 0.177 0.823 41 H 0.126 0.874 42 H 0.147 0.853 43 H 0.167 0.833 44 H 0.106 0.894 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.827 5.716 -2.797 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.065 3.935 3 C -0.195 4.195 4 C -0.242 4.242 5 O -0.266 6.266 6 C 0.331 3.669 7 O -0.384 6.384 8 C -0.091 4.091 9 C 0.243 3.757 10 O -0.462 6.462 11 N -0.213 5.213 12 C -0.456 4.456 13 H 0.094 0.906 14 C -0.199 4.199 15 N -0.554 5.554 16 Si 0.751 3.249 17 H -0.185 1.185 18 H -0.191 1.191 19 H -0.155 1.155 20 C -0.136 4.136 21 C -0.746 4.746 22 S 2.615 3.385 23 O -0.979 6.979 24 O -0.948 6.948 25 C -0.740 4.740 26 C -0.119 4.119 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.064 0.936 36 H 0.221 0.779 37 H 0.092 0.908 38 H 0.152 0.848 39 H 0.123 0.877 40 H 0.195 0.805 41 H 0.145 0.855 42 H 0.165 0.835 43 H 0.185 0.815 44 H 0.125 0.875 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.791 5.505 -1.910 18.721 hybrid contribution 1.022 -0.390 -1.486 1.845 sum -16.769 5.115 -3.396 17.858 Atomic orbital electron populations 1.22452 0.92174 1.04260 1.04389 1.22658 0.95801 0.93135 0.81874 1.21890 1.01694 0.91279 1.04624 1.22517 1.01068 1.02592 0.98071 1.86617 1.69412 1.24428 1.46172 1.22581 0.76976 0.81277 0.86042 1.90563 1.35368 1.70050 1.42410 1.21057 0.94380 0.97825 0.95885 1.19612 0.88166 0.83598 0.84318 1.90501 1.68494 1.45594 1.41624 1.42172 1.06526 1.39244 1.33341 1.19084 0.80614 1.25537 1.20349 0.90648 1.25867 0.96395 0.98433 0.99164 1.69748 1.08309 1.39227 1.38114 0.85845 0.80225 0.79256 0.79563 1.18517 1.19125 1.15451 1.21397 1.02978 0.88350 1.00880 1.30360 1.11829 1.13045 1.19413 1.07508 0.74824 0.79034 0.77162 1.93538 1.71285 1.74836 1.58218 1.93534 1.28824 1.86634 1.85829 1.30432 1.14418 1.21661 1.07464 1.21161 1.01526 1.02521 0.86648 0.90997 0.88647 0.91200 0.92838 0.87530 0.90701 0.91400 0.88208 0.93560 0.77921 0.90826 0.84757 0.87709 0.80495 0.85535 0.83535 0.81484 0.87529 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.37 71.98 0.60 -2.65 16 2 C 0.10 2.35 1.13 -10.79 -0.01 2.34 16 3 C -0.14 -2.59 8.85 71.99 0.64 -1.95 16 4 C -0.19 -4.54 8.37 71.98 0.60 -3.93 16 5 O -0.35 -10.56 9.45 -51.39 -0.49 -11.05 16 6 C 0.49 14.71 5.82 71.24 0.41 15.13 16 7 O -0.50 -14.51 11.28 21.98 0.25 -14.26 16 8 C -0.09 -2.61 0.61 -53.95 -0.03 -2.64 16 9 C 0.46 18.56 4.44 87.66 0.39 18.95 16 10 O -0.58 -27.31 13.25 -3.08 -0.04 -27.35 16 11 N -0.57 -25.23 4.19 -306.98 -1.29 -26.52 16 12 C -0.33 -17.68 10.16 84.04 0.85 -16.82 16 13 H 0.08 4.77 7.39 -2.91 -0.02 4.75 16 14 C 0.00 0.15 5.50 84.92 0.47 0.62 16 15 N -0.91 -52.08 13.96 21.66 0.30 -51.78 16 16 Si 0.93 37.24 27.74 68.60 1.90 39.14 16 17 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 18 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 19 H -0.23 -7.86 6.52 99.48 0.65 -7.21 16 20 C -0.10 -2.44 3.67 30.47 0.11 -2.32 16 21 C -0.62 -15.76 6.03 72.00 0.43 -15.33 16 22 S 2.43 66.05 5.30 -56.49 -0.30 65.75 16 23 O -0.98 -34.69 18.10 -127.38 -2.31 -36.99 16 24 O -0.95 -26.81 17.95 -127.38 -2.29 -29.10 16 25 C -0.61 -16.07 5.98 71.99 0.43 -15.64 16 26 C -0.08 -2.01 4.27 30.47 0.13 -1.88 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.52 5.89 -2.39 -0.01 1.51 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.87 5.89 -2.39 -0.01 1.85 16 34 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.39 14.96 4.57 -92.71 -0.42 14.54 16 37 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 38 H 0.13 2.51 8.02 -2.39 -0.02 2.49 16 39 H 0.10 2.54 6.88 -2.39 -0.02 2.53 16 40 H 0.18 3.24 8.14 -2.40 -0.02 3.22 16 41 H 0.13 3.92 6.30 -2.39 -0.02 3.90 16 42 H 0.15 4.90 5.16 -2.39 -0.01 4.89 16 43 H 0.17 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.11 2.72 7.80 -2.39 -0.02 2.70 16 45 H 0.13 2.26 8.01 -2.39 -0.02 2.24 16 Total: -1.00 -74.97 362.65 1.32 -73.65 By element: Atomic # 1 Polarization: 44.10 SS G_CDS: 0.54 Total: 44.64 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 5.03 Total: -26.14 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -0.98 Total: -78.29 kcal Atomic # 8 Polarization: -113.87 SS G_CDS: -4.87 Total: -118.75 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 1.90 Total: 39.14 kcal Atomic # 16 Polarization: 66.05 SS G_CDS: -0.30 Total: 65.75 kcal Total: -74.97 1.32 -73.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632150877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.937 kcal (2) G-P(sol) polarization free energy of solvation -74.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds