Wall clock time and date at job start Wed Apr 1 2020 05:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99658 * 90.00442 * 3 2 1 5 5 C 1.50701 * 109.47310 * 89.99973 * 4 3 2 6 6 H 1.07997 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00056 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00093 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46924 * 89.99863 * 9 7 5 11 11 H 1.48499 * 109.47472 * 209.99850 * 9 7 5 12 12 H 1.48501 * 109.47283 * 330.00165 * 9 7 5 13 13 C 1.34775 * 120.00337 * 270.00307 * 3 2 1 14 14 O 1.21282 * 120.00258 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99714 * 359.97438 * 13 3 2 16 16 O 1.45200 * 109.46985 * 179.97438 * 15 13 3 17 17 C 1.34229 * 117.00245 * 180.02562 * 16 15 13 18 18 O 1.20827 * 119.99754 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00269 * 180.02562 * 17 16 15 20 20 C 1.53004 * 109.47413 * 179.97438 * 19 17 16 21 21 H 1.09000 * 110.00796 * 53.61575 * 20 19 17 22 22 C 1.53870 * 110.02826 * 174.99832 * 20 19 17 23 23 C 1.54167 * 108.70180 * 166.47208 * 22 20 19 24 24 S 1.82918 * 105.08745 * 332.09412 * 23 22 20 25 25 O 1.42094 * 109.35486 * 115.52391 * 24 23 22 26 26 O 1.42100 * 109.34985 * 248.58970 * 24 23 22 27 27 C 1.55054 * 110.02659 * 292.19472 * 20 19 17 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 33 33 H 1.08998 * 109.46888 * 209.99779 * 4 3 2 34 34 H 1.08994 * 109.47490 * 329.99842 * 4 3 2 35 35 H 0.96994 * 120.00272 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.47745 * 300.00370 * 15 13 3 37 37 H 1.09002 * 109.46636 * 60.00675 * 15 13 3 38 38 H 1.08998 * 109.47200 * 299.99569 * 19 17 16 39 39 H 1.09004 * 109.47136 * 59.99532 * 19 17 16 40 40 H 1.09001 * 109.65023 * 286.32160 * 22 20 19 41 41 H 1.09002 * 109.64906 * 46.62623 * 22 20 19 42 42 H 1.09007 * 110.32118 * 90.99545 * 23 22 20 43 43 H 1.08996 * 110.32034 * 213.18567 * 23 22 20 44 44 H 1.09003 * 110.78612 * 316.53476 * 27 20 19 45 45 H 1.09002 * 110.78919 * 80.00073 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2303 1.0961 7 6 4.1494 2.3904 2.8775 8 7 5.3914 2.1834 3.2573 9 14 3.0135 3.4369 3.9281 10 1 2.3078 2.5716 4.9071 11 1 3.8113 4.4574 4.6544 12 1 2.0184 4.1138 3.0582 13 6 2.2428 2.0167 -1.1671 14 8 2.6475 3.1600 -1.1671 15 6 1.9922 1.3061 -2.4723 16 8 2.3059 2.1960 -3.5759 17 6 2.1348 1.7124 -4.8163 18 8 1.7355 0.5830 -4.9746 19 6 2.4405 2.5780 -6.0113 20 6 2.1632 1.7923 -7.2946 21 1 1.1484 1.3948 -7.2766 22 6 2.3511 2.7026 -8.5209 23 6 2.4036 1.8231 -9.7860 24 16 3.0570 0.2115 -9.2187 25 8 2.0624 -0.7880 -9.3942 26 8 4.3587 0.0164 -9.7542 27 6 3.1852 0.6353 -7.4401 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.0955 3.1410 1.1385 34 1 1.5818 1.6876 2.0284 35 1 5.7176 2.5744 4.0828 36 1 2.6226 0.4189 -2.5299 37 1 0.9443 1.0116 -2.5301 38 1 1.8109 3.4674 -5.9864 39 1 3.4892 2.8744 -5.9866 40 1 1.5149 3.3981 -8.5926 41 1 3.2823 3.2607 -8.4238 42 1 1.4041 1.7004 -10.2035 43 1 3.0721 2.2634 -10.5256 44 1 4.1915 0.9750 -7.1949 45 1 2.8998 -0.2134 -6.8186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647074880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:04 Heat of formation + Delta-G solvation = -188.882802 kcal Electronic energy + Delta-G solvation = -28410.375392 eV Core-core repulsion = 24134.823051 eV Total energy + Delta-G solvation = -4275.552342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -40.85415 -39.23375 -37.76591 -37.36961 -36.41918 -36.25898 -35.47808 -32.81517 -31.78973 -30.52563 -29.69139 -28.69210 -27.00483 -25.17263 -23.11074 -22.58639 -21.72589 -20.63803 -19.25367 -18.76164 -18.04156 -17.45498 -17.08502 -16.94751 -16.76146 -16.56705 -16.06600 -15.98266 -15.37976 -15.14795 -14.81924 -14.53911 -14.20185 -13.92887 -13.62205 -13.51676 -13.29607 -12.84726 -12.68293 -12.61391 -12.54178 -12.46969 -12.39393 -12.34317 -12.24343 -12.02521 -11.84931 -11.59743 -11.46411 -11.14054 -11.08461 -10.98395 -10.75498 -10.70026 -10.63478 -10.54617 -10.16662 -9.61436 -9.18747 -8.64848 -7.88863 -6.14042 -4.13678 -0.36788 1.96967 2.12234 2.25675 3.08969 3.17065 3.22804 3.31379 3.34843 3.54049 3.63539 3.80285 3.98612 4.07294 4.29555 4.31851 4.34614 4.52519 4.69958 4.76017 4.86969 4.96987 5.03099 5.08365 5.09634 5.10961 5.17948 5.19075 5.24236 5.43097 5.43660 5.47778 5.59921 5.87457 6.04738 6.22909 6.29486 6.57156 6.87222 7.17962 7.51540 7.54197 8.04442 8.39168 8.74732 8.89067 9.45298 10.99207 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.002004 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.071708 B =13970.982198 C =14253.727622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.587 5.587 4 C 0.218 3.782 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.875 3.125 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.509 3.491 14 O -0.518 6.518 15 C 0.050 3.950 16 O -0.328 6.328 17 C 0.460 3.540 18 O -0.509 6.509 19 C -0.101 4.101 20 C -0.079 4.079 21 H 0.108 0.892 22 C -0.111 4.111 23 C -0.594 4.594 24 S 2.387 3.613 25 O -0.935 6.935 26 O -0.940 6.940 27 C -0.588 4.588 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.029 0.971 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.103 -0.840 -23.730 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.702 3.298 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.188 1.188 13 C 0.294 3.706 14 O -0.394 6.394 15 C -0.027 4.027 16 O -0.243 6.243 17 C 0.303 3.697 18 O -0.398 6.398 19 C -0.139 4.139 20 C -0.099 4.099 21 H 0.126 0.874 22 C -0.149 4.149 23 C -0.723 4.723 24 S 2.571 3.429 25 O -0.932 6.932 26 O -0.937 6.937 27 C -0.718 4.718 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.644 -1.361 -24.091 25.985 hybrid contribution -0.651 0.954 1.218 1.678 sum -10.294 -0.407 -22.873 25.086 Atomic orbital electron populations 1.22244 0.96447 1.01929 1.02307 1.21553 0.93677 0.83563 1.03535 1.47878 1.64151 1.13526 1.06506 1.19707 0.97372 0.93667 0.79450 1.21302 0.95294 1.33110 1.07310 0.90713 1.24855 0.95053 0.95729 0.97336 1.69889 1.15173 1.44787 1.23523 0.86861 0.81275 0.80895 0.80799 1.20058 1.20873 1.18820 1.19710 0.79469 0.87118 0.84312 1.90718 1.44294 1.17603 1.86744 1.22945 1.02839 0.92650 0.84240 1.86556 1.78417 1.44942 1.14390 1.23636 0.74264 0.87014 0.84773 1.90656 1.42480 1.19986 1.86670 1.21294 1.06232 0.98415 0.87954 1.21724 1.00384 0.93557 0.94230 0.87407 1.21960 1.05781 0.98155 0.89027 1.30497 1.13749 1.20886 1.07153 1.09123 0.75798 0.78301 0.79689 1.93632 1.60361 1.54566 1.84689 1.93621 1.38171 1.85120 1.76818 1.30838 1.07727 1.09075 1.24117 0.91639 0.91957 0.93055 0.89135 0.91391 0.93960 0.95311 0.92476 0.88400 0.88585 0.86425 0.86533 0.88414 0.89052 0.84450 0.84244 0.84208 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 37.16 0.38 -1.64 16 2 C 0.10 1.47 5.93 -4.04 -0.02 1.45 16 3 N -0.59 -11.52 2.46 -175.06 -0.43 -11.95 16 4 C 0.22 5.14 4.23 -5.19 -0.02 5.11 16 5 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 6 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 9 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 13 C 0.51 10.07 7.75 -10.99 -0.09 9.99 16 14 O -0.52 -12.56 16.08 -14.11 -0.23 -12.78 16 15 C 0.05 0.75 4.50 36.01 0.16 0.91 16 16 O -0.33 -4.75 9.75 -45.90 -0.45 -5.20 16 17 C 0.46 5.11 7.74 36.00 0.28 5.39 16 18 O -0.51 -6.42 14.19 -18.75 -0.27 -6.69 16 19 C -0.10 -0.62 5.29 -27.88 -0.15 -0.77 16 20 C -0.08 -0.40 2.21 -89.08 -0.20 -0.60 16 21 H 0.11 0.56 7.92 -51.93 -0.41 0.15 16 22 C -0.11 -0.29 5.75 -25.67 -0.15 -0.44 16 23 C -0.59 -1.87 7.26 37.77 0.27 -1.59 16 24 S 2.39 16.38 6.10 -107.50 -0.66 15.72 16 25 O -0.94 -10.23 18.14 -57.73 -1.05 -11.28 16 26 O -0.94 -9.90 18.15 -57.73 -1.05 -10.95 16 27 C -0.59 -3.60 6.11 38.24 0.23 -3.37 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.57 7.22 -51.93 -0.38 0.20 16 31 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 33 H 0.04 1.08 6.48 -51.93 -0.34 0.74 16 34 H 0.03 0.63 7.50 -51.93 -0.39 0.24 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.10 1.32 7.39 -51.93 -0.38 0.94 16 37 H 0.10 1.19 7.18 -51.93 -0.37 0.82 16 38 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.12 0.55 8.09 -51.93 -0.42 0.13 16 40 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.09 0.12 8.10 -51.93 -0.42 -0.30 16 42 H 0.14 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.14 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.14 0.64 8.06 -51.93 -0.42 0.22 16 45 H 0.15 1.15 6.93 -51.93 -0.36 0.79 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -41.09 384.08 -8.73 -49.82 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -6.77 Total: -3.62 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 0.27 Total: 1.19 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.34 Total: -38.36 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -3.04 Total: -46.89 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 16 Polarization: 16.38 SS G_CDS: -0.66 Total: 15.72 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -41.09 -8.73 -49.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647074880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.066 kcal (2) G-P(sol) polarization free energy of solvation -41.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds