Wall clock time and date at job start Wed Apr 1 2020 05:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99658 * 90.00442 * 3 2 1 5 5 C 1.50701 * 109.47310 * 89.99973 * 4 3 2 6 6 H 1.07997 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00056 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00093 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46924 * 89.99863 * 9 7 5 11 11 H 1.48499 * 109.47472 * 209.99850 * 9 7 5 12 12 H 1.48501 * 109.47283 * 330.00165 * 9 7 5 13 13 C 1.34775 * 120.00337 * 270.00307 * 3 2 1 14 14 O 1.21282 * 120.00258 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99714 * 359.97438 * 13 3 2 16 16 O 1.45200 * 109.46985 * 179.97438 * 15 13 3 17 17 C 1.34229 * 117.00245 * 180.02562 * 16 15 13 18 18 O 1.20827 * 119.99754 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00269 * 180.02562 * 17 16 15 20 20 C 1.53004 * 109.47413 * 179.97438 * 19 17 16 21 21 H 1.09000 * 110.00796 * 53.61575 * 20 19 17 22 22 C 1.53870 * 110.02826 * 174.99832 * 20 19 17 23 23 C 1.54167 * 108.70180 * 166.47208 * 22 20 19 24 24 S 1.82918 * 105.08745 * 332.09412 * 23 22 20 25 25 O 1.42094 * 109.35486 * 115.52391 * 24 23 22 26 26 O 1.42100 * 109.34985 * 248.58970 * 24 23 22 27 27 C 1.55054 * 110.02659 * 292.19472 * 20 19 17 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 33 33 H 1.08998 * 109.46888 * 209.99779 * 4 3 2 34 34 H 1.08994 * 109.47490 * 329.99842 * 4 3 2 35 35 H 0.96994 * 120.00272 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.47745 * 300.00370 * 15 13 3 37 37 H 1.09002 * 109.46636 * 60.00675 * 15 13 3 38 38 H 1.08998 * 109.47200 * 299.99569 * 19 17 16 39 39 H 1.09004 * 109.47136 * 59.99532 * 19 17 16 40 40 H 1.09001 * 109.65023 * 286.32160 * 22 20 19 41 41 H 1.09002 * 109.64906 * 46.62623 * 22 20 19 42 42 H 1.09007 * 110.32118 * 90.99545 * 23 22 20 43 43 H 1.08996 * 110.32034 * 213.18567 * 23 22 20 44 44 H 1.09003 * 110.78612 * 316.53476 * 27 20 19 45 45 H 1.09002 * 110.78919 * 80.00073 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2303 1.0961 7 6 4.1494 2.3904 2.8775 8 7 5.3914 2.1834 3.2573 9 14 3.0135 3.4369 3.9281 10 1 2.3078 2.5716 4.9071 11 1 3.8113 4.4574 4.6544 12 1 2.0184 4.1138 3.0582 13 6 2.2428 2.0167 -1.1671 14 8 2.6475 3.1600 -1.1671 15 6 1.9922 1.3061 -2.4723 16 8 2.3059 2.1960 -3.5759 17 6 2.1348 1.7124 -4.8163 18 8 1.7355 0.5830 -4.9746 19 6 2.4405 2.5780 -6.0113 20 6 2.1632 1.7923 -7.2946 21 1 1.1484 1.3948 -7.2766 22 6 2.3511 2.7026 -8.5209 23 6 2.4036 1.8231 -9.7860 24 16 3.0570 0.2115 -9.2187 25 8 2.0624 -0.7880 -9.3942 26 8 4.3587 0.0164 -9.7542 27 6 3.1852 0.6353 -7.4401 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.0955 3.1410 1.1385 34 1 1.5818 1.6876 2.0284 35 1 5.7176 2.5744 4.0828 36 1 2.6226 0.4189 -2.5299 37 1 0.9443 1.0116 -2.5301 38 1 1.8109 3.4674 -5.9864 39 1 3.4892 2.8744 -5.9866 40 1 1.5149 3.3981 -8.5926 41 1 3.2823 3.2607 -8.4238 42 1 1.4041 1.7004 -10.2035 43 1 3.0721 2.2634 -10.5256 44 1 4.1915 0.9750 -7.1949 45 1 2.8998 -0.2134 -6.8186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647074880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:03 Heat of formation + Delta-G solvation = -220.062888 kcal Electronic energy + Delta-G solvation = -28411.727462 eV Core-core repulsion = 24134.823051 eV Total energy + Delta-G solvation = -4276.904412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.82054 -40.66311 -38.40230 -38.04238 -37.29075 -37.02948 -36.91071 -34.88998 -32.32588 -31.98492 -30.80141 -29.55803 -28.47029 -25.66699 -24.51169 -24.10505 -22.48954 -21.22349 -20.22854 -19.81896 -19.14103 -18.93740 -18.22969 -17.88303 -17.76068 -17.39663 -17.28000 -16.66351 -16.65112 -16.31730 -15.78834 -15.54191 -15.07142 -14.84342 -14.79268 -14.54633 -14.41475 -14.22148 -13.77484 -13.64239 -13.51064 -13.37175 -13.22246 -13.18921 -13.08766 -12.96861 -12.79695 -12.62264 -12.48656 -12.38935 -12.17710 -11.96841 -11.80086 -11.76359 -11.72592 -11.67356 -11.50254 -11.13740 -10.82916 -10.79169 -9.54060 -8.34563 -6.40396 -0.86692 1.13598 1.27187 1.32770 1.38380 1.47960 1.57605 1.66429 2.31054 2.34856 2.71046 2.99392 3.06782 3.36843 3.38882 3.50704 3.62185 3.83696 3.91600 3.96168 4.03945 4.12306 4.14648 4.27769 4.34926 4.50234 4.56603 4.63006 4.73318 4.74852 4.83615 4.87070 4.91670 4.94408 4.98249 5.12304 5.21749 5.34359 5.36447 5.44209 5.55601 6.20435 6.50010 6.61281 6.66365 7.14926 7.28081 8.82336 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.002004 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.071708 B =13970.982198 C =14253.727622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.593 5.593 4 C 0.226 3.774 5 C -0.538 4.538 6 H 0.028 0.972 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.949 3.051 10 H -0.251 1.251 11 H -0.282 1.282 12 H -0.253 1.253 13 C 0.501 3.499 14 O -0.574 6.574 15 C 0.061 3.939 16 O -0.351 6.351 17 C 0.455 3.545 18 O -0.528 6.528 19 C -0.097 4.097 20 C -0.080 4.080 21 H 0.105 0.895 22 C -0.108 4.108 23 C -0.561 4.561 24 S 2.379 3.621 25 O -0.988 6.988 26 O -0.987 6.987 27 C -0.587 4.587 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.023 0.977 34 H 0.053 0.947 35 H 0.269 0.731 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.135 0.865 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.155 0.845 43 H 0.162 0.838 44 H 0.154 0.846 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.623 0.641 -24.784 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.030 4.030 3 N -0.326 5.326 4 C 0.104 3.896 5 C -0.577 4.577 6 H 0.047 0.953 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.771 3.229 10 H -0.175 1.175 11 H -0.208 1.208 12 H -0.177 1.177 13 C 0.288 3.712 14 O -0.453 6.453 15 C -0.016 4.016 16 O -0.266 6.266 17 C 0.300 3.700 18 O -0.418 6.418 19 C -0.135 4.135 20 C -0.100 4.100 21 H 0.123 0.877 22 C -0.147 4.147 23 C -0.694 4.694 24 S 2.569 3.431 25 O -0.985 6.985 26 O -0.984 6.984 27 C -0.718 4.718 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.142 0.858 38 H 0.164 0.836 39 H 0.153 0.847 40 H 0.143 0.857 41 H 0.131 0.869 42 H 0.173 0.827 43 H 0.180 0.820 44 H 0.172 0.828 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.179 0.014 -25.173 27.964 hybrid contribution 0.188 0.464 1.483 1.565 sum -11.991 0.478 -23.690 26.556 Atomic orbital electron populations 1.22177 0.93618 1.03888 1.02340 1.21882 0.95933 0.80829 1.04309 1.47976 1.63902 1.15269 1.05409 1.19365 0.94934 0.93292 0.81962 1.21538 0.97066 1.32247 1.06852 0.95320 1.25865 0.96769 0.97147 0.98958 1.70048 1.17506 1.46454 1.24465 0.85700 0.79125 0.79069 0.79016 1.17542 1.20809 1.17712 1.20579 0.78045 0.86691 0.85895 1.90674 1.46774 1.20121 1.87741 1.22758 1.04672 0.91944 0.82179 1.86576 1.79110 1.45501 1.15445 1.24669 0.73336 0.87465 0.84522 1.90654 1.43438 1.21059 1.86607 1.21544 1.07964 0.98413 0.85604 1.21822 0.99739 0.93404 0.95034 0.87653 1.22076 1.08206 0.97632 0.86746 1.30287 1.14694 1.16341 1.08098 1.09070 0.74403 0.79765 0.79885 1.93558 1.61125 1.58283 1.85534 1.93554 1.40316 1.86716 1.77804 1.30770 1.09141 1.09211 1.22647 0.88665 0.92792 0.92165 0.90140 0.88979 0.95849 0.92908 0.92229 0.87246 0.85781 0.83556 0.84688 0.85680 0.86900 0.82705 0.82025 0.82783 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 10.24 71.98 0.74 -2.63 16 2 C 0.09 2.57 5.93 86.38 0.51 3.09 16 3 N -0.59 -23.21 2.46 -826.16 -2.03 -25.24 16 4 C 0.23 10.71 4.23 85.63 0.36 11.07 16 5 C -0.54 -31.17 9.94 25.60 0.25 -30.91 16 6 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 7 C 0.01 0.62 5.47 84.65 0.46 1.09 16 8 N -0.94 -59.13 13.96 21.45 0.30 -58.83 16 9 Si 0.95 43.45 27.47 68.60 1.88 45.33 16 10 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 13 C 0.50 19.88 7.75 87.66 0.68 20.56 16 14 O -0.57 -28.52 16.08 15.76 0.25 -28.26 16 15 C 0.06 1.74 4.50 71.24 0.32 2.06 16 16 O -0.35 -9.76 9.75 -45.06 -0.44 -10.19 16 17 C 0.46 9.32 7.74 71.23 0.55 9.87 16 18 O -0.53 -12.66 14.19 21.96 0.31 -12.35 16 19 C -0.10 -0.90 5.29 29.85 0.16 -0.74 16 20 C -0.08 -0.59 2.21 -9.80 -0.02 -0.61 16 21 H 0.11 0.85 7.92 -2.39 -0.02 0.83 16 22 C -0.11 -0.06 5.75 31.28 0.18 0.12 16 23 C -0.56 -1.59 7.26 72.38 0.53 -1.06 16 24 S 2.38 32.23 6.10 -56.49 -0.34 31.89 16 25 O -0.99 -22.63 18.14 -127.47 -2.31 -24.94 16 26 O -0.99 -21.40 18.15 -127.47 -2.31 -23.72 16 27 C -0.59 -6.71 6.11 72.69 0.44 -6.26 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.15 7.22 -2.39 -0.02 1.14 16 31 H 0.08 2.40 8.07 -2.39 -0.02 2.38 16 32 H 0.09 2.11 6.44 -2.39 -0.02 2.09 16 33 H 0.02 1.20 6.48 -2.39 -0.02 1.19 16 34 H 0.05 2.24 7.50 -2.39 -0.02 2.23 16 35 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.11 2.83 7.39 -2.39 -0.02 2.81 16 37 H 0.12 2.79 7.18 -2.39 -0.02 2.78 16 38 H 0.15 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.14 0.81 8.09 -2.39 -0.02 0.79 16 40 H 0.12 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.11 -0.31 8.10 -2.39 -0.02 -0.33 16 42 H 0.15 0.06 8.14 -2.38 -0.02 0.04 16 43 H 0.16 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.15 1.23 8.06 -2.39 -0.02 1.22 16 45 H 0.13 2.08 6.93 -2.39 -0.02 2.06 16 Total: -1.00 -95.93 384.08 1.42 -94.51 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 0.94 Total: 6.17 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.17 Total: 5.63 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -1.73 Total: -84.06 kcal Atomic # 8 Polarization: -94.96 SS G_CDS: -4.50 Total: -99.47 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.33 kcal Atomic # 16 Polarization: 32.23 SS G_CDS: -0.34 Total: 31.89 kcal Total: -95.93 1.42 -94.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647074880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.553 kcal (2) G-P(sol) polarization free energy of solvation -95.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds