Wall clock time and date at job start Wed Apr 1 2020 04:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00190 * 2 1 4 4 H 1.48502 * 109.46786 * 240.00044 * 3 2 1 5 5 H 1.48506 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47399 * 119.99783 * 3 2 1 7 7 C 1.37880 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99723 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45816 * 179.97438 * 9 7 2 11 11 C 1.53186 * 109.31534 * 178.62598 * 10 9 7 12 12 N 1.46926 * 108.77396 * 54.63265 * 11 10 9 13 13 C 1.34780 * 120.62707 * 126.37270 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.50703 * 109.47064 * 179.97438 * 15 13 12 17 17 C 1.33710 * 122.07544 * 124.74109 * 16 15 13 18 18 S 1.76254 * 108.21623 * 179.87567 * 17 16 15 19 19 C 1.76175 * 89.83565 * 0.31377 * 18 17 16 20 20 C 1.47900 * 125.47255 * 179.79565 * 19 18 17 21 21 N 1.34110 * 125.67173 * 179.71647 * 20 19 18 22 22 C 1.30634 * 109.77157 * 179.85521 * 21 20 19 23 23 N 1.34565 * 108.34157 * 0.40461 * 22 21 20 24 24 H 0.96994 * 126.73322 * 179.75433 * 23 22 21 25 25 N 1.31664 * 125.67210 * 0.02562 * 20 19 18 26 26 N 1.30217 * 109.05561 * 359.81605 * 19 18 17 27 27 C 1.46921 * 118.74177 * 306.64666 * 12 11 10 28 28 C 1.52760 * 109.00903 * 53.30762 * 27 12 11 29 29 H 0.97002 * 119.99615 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46199 * 299.96273 * 9 7 2 31 31 H 1.09008 * 109.49904 * 58.67189 * 10 9 7 32 32 H 1.09000 * 109.52420 * 298.59692 * 10 9 7 33 33 H 1.09005 * 109.58747 * 294.84888 * 11 10 9 34 34 H 1.09001 * 109.70993 * 174.49512 * 11 10 9 35 35 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 36 36 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 37 37 H 1.08004 * 125.89507 * 359.97438 * 17 16 15 38 38 H 1.08008 * 125.82891 * 180.18472 * 22 21 20 39 39 H 1.08996 * 109.58649 * 173.14582 * 27 12 11 40 40 H 1.09004 * 109.58204 * 293.57028 * 27 12 11 41 41 H 1.09000 * 109.56394 * 185.56047 * 28 27 12 42 42 H 1.09001 * 109.38512 * 65.51568 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2456 -3.6622 0.0005 11 6 1.4766 -4.9866 0.0352 12 7 0.5223 -5.0087 -1.0818 13 6 0.5121 -6.0344 -1.9560 14 8 1.2958 -6.9507 -1.8251 15 6 -0.4725 -6.0423 -3.0969 16 6 -0.2768 -7.2889 -3.9207 17 6 -1.2772 -8.1408 -4.1682 18 16 -0.6487 -9.4560 -5.1591 19 6 0.9462 -8.7081 -5.1309 20 6 2.1568 -9.2433 -5.7908 21 7 3.3714 -8.6748 -5.7764 22 6 4.2118 -9.4107 -6.4537 23 7 3.5483 -10.4787 -6.9332 24 1 3.9155 -11.1943 -7.4755 25 7 2.2201 -10.3542 -6.4947 26 7 0.8881 -7.6088 -4.4355 27 6 -0.4164 -3.8884 -1.2312 28 6 0.3701 -2.5790 -1.2484 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5567 0.8907 31 1 2.8881 -3.5915 0.8783 32 1 2.8561 -3.6195 -0.9015 33 1 0.9370 -5.0713 0.9785 34 1 2.1734 -5.8190 -0.0630 35 1 -1.4878 -6.0238 -2.7007 36 1 -0.3106 -5.1646 -3.7226 37 1 -2.2953 -8.0396 -3.8221 38 1 5.2594 -9.1965 -6.6060 39 1 -0.9666 -3.9949 -2.1660 40 1 -1.1135 -3.8817 -0.3932 41 1 -0.3224 -1.7373 -1.2595 42 1 0.9978 -2.5457 -2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647133923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:19 Heat of formation + Delta-G solvation = 78.289776 kcal Electronic energy + Delta-G solvation = -27100.006668 eV Core-core repulsion = 23207.934220 eV Total energy + Delta-G solvation = -3892.072447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.14343 -41.42387 -40.28373 -38.24887 -35.28044 -34.41212 -33.38301 -32.86633 -32.16772 -31.57673 -29.39303 -27.81537 -26.74005 -24.70769 -23.92373 -23.82607 -22.48998 -21.43733 -20.42327 -19.83161 -19.33618 -18.68769 -18.47908 -17.87701 -16.94598 -16.70318 -16.61775 -16.41381 -16.18786 -15.89876 -15.32479 -14.91789 -14.72533 -14.69426 -14.48970 -14.20837 -14.01299 -13.89609 -13.33039 -13.25941 -13.08520 -13.04087 -12.78298 -12.45859 -12.37612 -12.11396 -11.87902 -11.59934 -11.43744 -11.25212 -11.16351 -10.98466 -10.92791 -10.71388 -10.61997 -10.37154 -10.35742 -9.57757 -9.45474 -8.05516 -6.18052 -0.74682 0.14485 0.55187 0.60883 1.43769 1.44351 1.47138 1.51716 1.54156 1.74647 2.07830 2.32554 2.46031 2.67458 3.20717 3.34630 3.65458 3.78496 4.05582 4.10949 4.21097 4.28014 4.31258 4.42440 4.51191 4.55132 4.61022 4.66641 4.80072 4.88870 4.90931 4.93190 5.03576 5.11989 5.21850 5.30641 5.47210 5.61029 5.69793 6.02752 6.14085 6.17739 6.43054 6.59583 6.69554 6.90250 6.94900 7.30452 7.48904 8.97665 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016334 B = 0.002334 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.824620 B =11995.068231 C =12856.173442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.020 3.980 3 Si 0.946 3.054 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.043 0.957 9 C 0.046 3.954 10 C -0.113 4.113 11 C 0.120 3.880 12 N -0.606 5.606 13 C 0.512 3.488 14 O -0.577 6.577 15 C -0.062 4.062 16 C 0.056 3.944 17 C -0.215 4.215 18 S 0.177 5.823 19 C 0.097 3.903 20 C 0.280 3.720 21 N -0.562 5.562 22 C 0.284 3.716 23 N -0.458 5.458 24 H 0.466 0.534 25 N -0.309 5.309 26 N -0.435 5.435 27 C 0.114 3.886 28 C -0.118 4.118 29 H 0.262 0.738 30 H 0.006 0.994 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.153 0.847 36 H 0.120 0.880 37 H 0.227 0.773 38 H 0.281 0.719 39 H 0.107 0.893 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 -21.338 -14.844 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.180 4.180 3 Si 0.773 3.227 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.151 4.151 11 C -0.003 4.003 12 N -0.339 5.339 13 C 0.301 3.699 14 O -0.457 6.457 15 C -0.104 4.104 16 C -0.078 4.078 17 C -0.355 4.355 18 S 0.430 5.570 19 C -0.180 4.180 20 C -0.003 4.003 21 N -0.291 5.291 22 C -0.014 4.014 23 N -0.180 5.180 24 H 0.317 0.683 25 N -0.143 5.143 26 N -0.151 5.151 27 C -0.008 4.008 28 C -0.156 4.156 29 H 0.071 0.929 30 H 0.024 0.976 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.171 0.829 36 H 0.138 0.862 37 H 0.244 0.756 38 H 0.296 0.704 39 H 0.125 0.875 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.323 -22.453 -15.123 27.170 hybrid contribution 1.273 1.614 0.390 2.092 sum -1.051 -20.839 -14.733 25.543 Atomic orbital electron populations 1.69925 1.06630 1.27184 1.51114 1.25594 0.95746 1.01748 0.94866 0.85795 0.78598 0.79833 0.78492 1.20248 1.20594 1.20081 1.21509 0.92777 0.92427 1.50743 0.93861 1.18598 0.93009 0.91594 0.94008 1.21845 0.98386 0.94716 1.00182 1.21487 0.92001 0.97759 0.89007 1.48270 1.36317 1.21388 1.27929 1.20909 0.84716 0.81218 0.83087 1.90671 1.42447 1.37676 1.74919 1.20438 1.01360 0.95329 0.93304 1.19751 0.87098 0.99572 1.01333 1.27493 1.06251 0.96789 1.04995 1.84637 1.01316 1.24201 1.46832 1.23886 0.95318 0.95737 1.03090 1.20751 0.91253 0.91049 0.97205 1.70661 1.00534 1.33126 1.24756 1.27206 1.01485 0.82911 0.89751 1.48035 1.05238 1.22880 1.41876 0.68326 1.78125 0.98778 1.18627 1.18773 1.66149 1.26671 1.14889 1.07373 1.21885 0.90955 0.84838 1.03138 1.21730 0.99471 0.96687 0.97762 0.92854 0.97583 0.92144 0.94585 0.91072 0.91047 0.82892 0.86248 0.75595 0.70363 0.87513 0.90955 0.89884 0.95739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.97 11.30 21.45 0.24 -49.73 16 2 C 0.02 1.06 5.30 84.65 0.45 1.51 16 3 Si 0.95 43.24 29.54 68.60 2.03 45.27 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -29.45 8.56 25.60 0.22 -29.23 16 8 H 0.04 2.40 7.74 -2.91 -0.02 2.37 16 9 C 0.05 2.27 2.07 -11.51 -0.02 2.24 16 10 C -0.11 -4.89 5.30 30.67 0.16 -4.73 16 11 C 0.12 4.58 6.44 86.36 0.56 5.14 16 12 N -0.61 -21.60 2.98 -819.75 -2.44 -24.04 16 13 C 0.51 18.09 7.66 87.66 0.67 18.76 16 14 O -0.58 -25.20 14.83 -3.03 -0.04 -25.25 16 15 C -0.06 -1.58 4.52 29.10 0.13 -1.45 16 16 C 0.06 1.56 5.61 41.61 0.23 1.79 16 17 C -0.22 -4.22 11.02 66.79 0.74 -3.48 16 18 S 0.18 3.74 23.43 -56.49 -1.32 2.42 16 19 C 0.10 2.97 7.54 87.49 0.66 3.63 16 20 C 0.28 8.20 8.04 137.23 1.10 9.31 16 21 N -0.56 -15.94 11.22 -193.36 -2.17 -18.11 16 22 C 0.28 4.12 13.11 180.38 2.36 6.49 16 23 N -0.46 -5.85 7.44 -60.51 -0.45 -6.30 16 24 H 0.47 1.36 8.96 -213.11 -1.91 -0.55 16 25 N -0.31 -7.14 12.84 -52.58 -0.68 -7.82 16 26 N -0.43 -15.08 9.65 -177.78 -1.72 -16.80 16 27 C 0.11 3.76 6.31 86.22 0.54 4.31 16 28 C -0.12 -5.19 5.14 30.53 0.16 -5.03 16 29 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 30 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.07 2.82 7.00 -2.39 -0.02 2.80 16 35 H 0.15 2.43 7.82 -2.39 -0.02 2.41 16 36 H 0.12 2.86 7.68 -2.39 -0.02 2.85 16 37 H 0.23 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.28 0.51 8.06 -2.91 -0.02 0.49 16 39 H 0.11 2.70 5.93 -2.39 -0.01 2.68 16 40 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 41 H 0.08 4.04 6.03 -2.39 -0.01 4.03 16 42 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -84.30 365.62 0.58 -83.72 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -0.83 Total: 7.38 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 7.96 Total: 9.26 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -7.21 Total: -122.80 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.04 Total: -25.25 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.32 Total: 2.42 kcal Total: -84.30 0.58 -83.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647133923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.010 kcal (2) G-P(sol) polarization free energy of solvation -84.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds