Wall clock time and date at job start Wed Apr 1 2020 04:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99813 * 2 1 4 4 H 1.48501 * 109.47144 * 270.00039 * 3 2 1 5 5 H 1.48491 * 109.47054 * 30.00230 * 3 2 1 6 6 H 1.48494 * 109.47036 * 150.00397 * 3 2 1 7 7 C 1.38809 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00184 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00180 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99954 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46936 * 180.02562 * 10 9 7 12 12 N 1.28677 * 124.92960 * 90.02380 * 11 10 9 13 13 C 1.32432 * 117.82620 * 180.02562 * 12 11 10 14 14 C 1.34628 * 113.30026 * 359.76549 * 13 12 11 15 15 S 1.70908 * 124.92348 * 270.00005 * 11 10 9 16 16 C 1.50992 * 125.54883 * 180.44292 * 14 13 12 17 17 C 1.53295 * 108.95790 * 342.10476 * 16 14 13 18 18 N 1.47062 * 108.60784 * 45.06357 * 17 16 14 19 19 C 1.34780 * 120.80029 * 115.31048 * 18 17 16 20 20 O 1.21285 * 119.99544 * 359.97438 * 19 18 17 21 21 C 1.50691 * 120.00226 * 179.97438 * 19 18 17 22 22 N 1.46500 * 109.47412 * 179.97438 * 21 19 18 23 23 C 1.34949 * 126.03910 * 124.99971 * 22 21 19 24 24 C 1.35314 * 107.74644 * 179.97438 * 23 22 21 25 25 C 1.39871 * 107.92039 * 359.97438 * 24 23 22 26 26 N 1.30839 * 108.20207 * 359.74307 * 25 24 23 27 27 C 1.47032 * 118.40157 * 295.27926 * 18 17 16 28 28 H 0.96992 * 120.00124 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99991 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47228 * 60.00349 * 10 9 7 31 31 H 1.08993 * 109.47201 * 300.00050 * 10 9 7 32 32 H 1.08995 * 109.55560 * 101.95243 * 16 14 13 33 33 H 1.09002 * 109.55473 * 222.26252 * 16 14 13 34 34 H 1.09000 * 109.61010 * 164.79300 * 17 16 14 35 35 H 1.08996 * 109.61683 * 285.14475 * 17 16 14 36 36 H 1.09004 * 109.47519 * 300.00025 * 21 19 18 37 37 H 1.09003 * 109.47345 * 59.99807 * 21 19 18 38 38 H 1.07995 * 126.12032 * 359.95866 * 23 22 21 39 39 H 1.07997 * 126.03765 * 180.02562 * 24 23 22 40 40 H 1.08001 * 125.89912 * 179.97438 * 25 24 23 41 41 H 1.08991 * 109.82279 * 285.69880 * 27 18 17 42 42 H 1.09007 * 109.80660 * 164.79771 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.5938 -2.1954 -0.0011 12 7 6.3183 -2.0612 1.0539 13 6 7.6102 -1.8205 0.8901 14 6 7.9801 -1.7559 -0.4027 15 16 6.5558 -2.0166 -1.4024 16 6 9.3825 -1.5053 -0.9030 17 6 10.2163 -0.9020 0.2331 18 7 9.9530 -1.6630 1.4636 19 6 10.9305 -2.3775 2.0557 20 8 12.0432 -2.3983 1.5737 21 6 10.6409 -3.1503 3.3165 22 7 11.8569 -3.8377 3.7582 23 6 12.4302 -3.7335 4.9754 24 6 13.5296 -4.5223 4.9824 25 6 13.6314 -5.1299 3.7266 26 7 12.6259 -4.7248 2.9939 27 6 8.5978 -1.6252 2.0329 28 1 -0.4850 0.8400 0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 3.8485 -3.0426 -0.8908 31 1 3.8492 -3.0422 0.8891 32 1 9.8292 -2.4465 -1.2234 33 1 9.3518 -0.8101 -1.7420 34 1 11.2753 -0.9655 -0.0167 35 1 9.9364 0.1414 0.3781 36 1 10.3080 -2.4639 4.0951 37 1 9.8594 -3.8847 3.1212 38 1 12.0753 -3.1286 5.7966 39 1 14.2081 -4.6593 5.8113 40 1 14.4041 -5.8178 3.4166 41 1 8.4243 -0.6611 2.5105 42 1 8.4814 -2.4264 2.7629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689354943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:27 Heat of formation + Delta-G solvation = 126.789636 kcal Electronic energy + Delta-G solvation = -26844.796359 eV Core-core repulsion = 22954.827023 eV Total energy + Delta-G solvation = -3889.969336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.54017 -40.70601 -39.42514 -36.75585 -34.94130 -33.94724 -32.66053 -31.76649 -30.36631 -30.20065 -28.16479 -27.29775 -25.99982 -23.80064 -23.18540 -21.87198 -21.41159 -21.34697 -19.95388 -18.56974 -18.47756 -17.76096 -17.60053 -17.16405 -16.30749 -16.09219 -15.53233 -14.97890 -14.92523 -14.57899 -14.45525 -14.18157 -13.97793 -13.77390 -13.75151 -13.31921 -13.22071 -13.04429 -12.88306 -12.76424 -12.64238 -12.42181 -12.06647 -11.71047 -11.34780 -11.25633 -10.95789 -10.90132 -10.48668 -10.28706 -9.71025 -9.64150 -9.54559 -9.30817 -9.13370 -9.03661 -8.89307 -8.67006 -7.40181 -5.86893 -3.25218 0.66132 1.31489 1.55557 1.77415 1.98618 2.08086 2.49727 2.63552 2.68044 3.31025 3.34420 3.38874 3.70594 3.93244 4.12907 4.43812 4.46486 4.50368 4.52345 4.56657 4.76198 4.77771 4.83698 4.97747 5.03533 5.12174 5.26031 5.36260 5.40855 5.47309 5.47628 5.50663 5.58668 5.72530 5.87046 5.96552 6.23879 6.30692 6.35900 6.60014 6.81951 7.44286 7.61981 7.76524 7.83975 8.30210 9.05881 9.78316 9.96095 11.30565 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019691 B = 0.002247 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.629387 B =12459.857837 C =12865.263159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.011 3.989 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.095 0.905 9 N -0.746 5.746 10 C 0.229 3.771 11 C 0.068 3.932 12 N -0.462 5.462 13 C 0.042 3.958 14 C -0.233 4.233 15 S 0.141 5.859 16 C -0.054 4.054 17 C 0.118 3.882 18 N -0.611 5.611 19 C 0.510 3.490 20 O -0.507 6.507 21 C 0.115 3.885 22 N -0.365 5.365 23 C 0.052 3.948 24 C -0.271 4.271 25 C 0.040 3.960 26 N -0.268 5.268 27 C 0.191 3.809 28 H 0.261 0.739 29 H 0.363 0.637 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.174 0.826 39 H 0.148 0.852 40 H 0.182 0.818 41 H 0.096 0.904 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.539 -5.501 6.355 27.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.185 4.185 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.113 0.887 9 N -0.394 5.394 10 C 0.099 3.901 11 C -0.211 4.211 12 N -0.176 5.176 13 C -0.092 4.092 14 C -0.355 4.355 15 S 0.400 5.600 16 C -0.095 4.095 17 C -0.006 4.006 18 N -0.347 5.347 19 C 0.296 3.704 20 O -0.380 6.380 21 C -0.011 4.011 22 N -0.148 5.148 23 C -0.093 4.093 24 C -0.300 4.300 25 C -0.147 4.147 26 N -0.088 5.088 27 C 0.065 3.935 28 H 0.072 0.928 29 H 0.196 0.804 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.146 0.854 37 H 0.135 0.865 38 H 0.191 0.809 39 H 0.166 0.834 40 H 0.199 0.801 41 H 0.114 0.886 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 25.686 -5.706 4.322 26.665 hybrid contribution 1.190 1.485 1.527 2.440 sum 26.876 -4.221 5.849 27.827 Atomic orbital electron populations 1.69688 1.05018 1.26040 1.56753 1.24634 0.95206 0.97173 1.01510 0.86591 0.79316 0.85038 0.77916 1.20853 1.21442 1.20379 1.18988 0.79785 0.95056 1.44064 0.88733 1.42611 1.04075 1.01242 1.91435 1.19312 0.79029 0.90668 1.01081 1.27366 1.02203 1.01656 0.89864 1.65779 1.03873 1.15598 1.32382 1.20775 0.90772 1.04337 0.93286 1.25887 1.00400 1.12811 0.96381 1.84052 0.98159 1.65178 1.12648 1.20488 0.88264 1.02465 0.98241 1.21655 1.01459 0.94848 0.82592 1.48045 1.09859 1.49355 1.27421 1.20448 0.84799 0.79280 0.85884 1.90789 1.21766 1.61142 1.64302 1.21551 0.85421 0.97084 0.97020 1.48095 1.21496 1.35415 1.09776 1.22560 0.95736 1.01583 0.89403 1.21503 1.01998 1.06430 1.00075 1.23942 0.97623 1.00439 0.92744 1.77512 1.05923 1.07130 1.18282 1.20295 0.77555 1.03792 0.91828 0.92838 0.80359 0.92978 0.91994 0.89659 0.89011 0.87803 0.90166 0.85422 0.86484 0.80866 0.83446 0.80062 0.88565 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.97 55.49 0.78 -27.69 16 2 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 3 Si 0.88 21.75 27.74 -169.99 -4.71 17.04 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 7 C -0.25 -6.86 10.47 -15.06 -0.16 -7.02 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.75 -17.42 5.40 -61.09 -0.33 -17.75 16 10 C 0.23 4.34 6.84 -5.19 -0.04 4.30 16 11 C 0.07 1.13 6.75 -13.60 -0.09 1.04 16 12 N -0.46 -7.39 10.51 -7.28 -0.08 -7.47 16 13 C 0.04 0.54 6.87 -82.82 -0.57 -0.03 16 14 C -0.23 -2.85 6.43 -35.44 -0.23 -3.08 16 15 S 0.14 1.93 23.17 -107.50 -2.49 -0.56 16 16 C -0.05 -0.51 6.44 -27.59 -0.18 -0.68 16 17 C 0.12 1.04 6.41 -3.58 -0.02 1.02 16 18 N -0.61 -5.63 2.92 -173.06 -0.51 -6.14 16 19 C 0.51 5.30 7.73 -10.99 -0.08 5.22 16 20 O -0.51 -7.28 15.15 5.55 0.08 -7.19 16 21 C 0.11 0.87 5.39 -5.20 -0.03 0.84 16 22 N -0.36 -3.68 3.39 -62.55 -0.21 -3.89 16 23 C 0.05 0.41 11.45 -17.22 -0.20 0.21 16 24 C -0.27 -2.21 10.80 -40.01 -0.43 -2.64 16 25 C 0.04 0.39 12.03 -17.36 -0.21 0.18 16 26 N -0.27 -3.38 11.66 30.63 0.36 -3.03 16 27 C 0.19 1.70 6.65 -4.11 -0.03 1.68 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.36 8.50 5.52 -40.82 -0.23 8.28 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.95 7.01 -51.93 -0.36 0.59 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.13 0.47 8.02 -51.93 -0.42 0.05 16 37 H 0.12 0.78 7.57 -51.93 -0.39 0.38 16 38 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.70 6.15 -51.93 -0.32 0.38 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -37.03 368.05 -9.04 -46.07 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.11 Total: 3.79 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -2.36 Total: 1.27 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: 0.01 Total: -65.97 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.08 Total: -7.19 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.04 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.49 Total: -0.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.03 -9.04 -46.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689354943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.861 kcal (2) G-P(sol) polarization free energy of solvation -37.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds