Wall clock time and date at job start Wed Apr 1 2020 04:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99813 * 2 1 4 4 H 1.48501 * 109.47144 * 270.00039 * 3 2 1 5 5 H 1.48491 * 109.47054 * 30.00230 * 3 2 1 6 6 H 1.48494 * 109.47036 * 150.00397 * 3 2 1 7 7 C 1.38809 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00184 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00180 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99954 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46936 * 180.02562 * 10 9 7 12 12 N 1.28677 * 124.92960 * 90.02380 * 11 10 9 13 13 C 1.32432 * 117.82620 * 180.02562 * 12 11 10 14 14 C 1.34628 * 113.30026 * 359.76549 * 13 12 11 15 15 S 1.70908 * 124.92348 * 270.00005 * 11 10 9 16 16 C 1.50992 * 125.54883 * 180.44292 * 14 13 12 17 17 C 1.53295 * 108.95790 * 342.10476 * 16 14 13 18 18 N 1.47062 * 108.60784 * 45.06357 * 17 16 14 19 19 C 1.34780 * 120.80029 * 115.31048 * 18 17 16 20 20 O 1.21285 * 119.99544 * 359.97438 * 19 18 17 21 21 C 1.50691 * 120.00226 * 179.97438 * 19 18 17 22 22 N 1.46500 * 109.47412 * 179.97438 * 21 19 18 23 23 C 1.34949 * 126.03910 * 124.99971 * 22 21 19 24 24 C 1.35314 * 107.74644 * 179.97438 * 23 22 21 25 25 C 1.39871 * 107.92039 * 359.97438 * 24 23 22 26 26 N 1.30839 * 108.20207 * 359.74307 * 25 24 23 27 27 C 1.47032 * 118.40157 * 295.27926 * 18 17 16 28 28 H 0.96992 * 120.00124 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99991 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47228 * 60.00349 * 10 9 7 31 31 H 1.08993 * 109.47201 * 300.00050 * 10 9 7 32 32 H 1.08995 * 109.55560 * 101.95243 * 16 14 13 33 33 H 1.09002 * 109.55473 * 222.26252 * 16 14 13 34 34 H 1.09000 * 109.61010 * 164.79300 * 17 16 14 35 35 H 1.08996 * 109.61683 * 285.14475 * 17 16 14 36 36 H 1.09004 * 109.47519 * 300.00025 * 21 19 18 37 37 H 1.09003 * 109.47345 * 59.99807 * 21 19 18 38 38 H 1.07995 * 126.12032 * 359.95866 * 23 22 21 39 39 H 1.07997 * 126.03765 * 180.02562 * 24 23 22 40 40 H 1.08001 * 125.89912 * 179.97438 * 25 24 23 41 41 H 1.08991 * 109.82279 * 285.69880 * 27 18 17 42 42 H 1.09007 * 109.80660 * 164.79771 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.5938 -2.1954 -0.0011 12 7 6.3183 -2.0612 1.0539 13 6 7.6102 -1.8205 0.8901 14 6 7.9801 -1.7559 -0.4027 15 16 6.5558 -2.0166 -1.4024 16 6 9.3825 -1.5053 -0.9030 17 6 10.2163 -0.9020 0.2331 18 7 9.9530 -1.6630 1.4636 19 6 10.9305 -2.3775 2.0557 20 8 12.0432 -2.3983 1.5737 21 6 10.6409 -3.1503 3.3165 22 7 11.8569 -3.8377 3.7582 23 6 12.4302 -3.7335 4.9754 24 6 13.5296 -4.5223 4.9824 25 6 13.6314 -5.1299 3.7266 26 7 12.6259 -4.7248 2.9939 27 6 8.5978 -1.6252 2.0329 28 1 -0.4850 0.8400 0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 3.8485 -3.0426 -0.8908 31 1 3.8492 -3.0422 0.8891 32 1 9.8292 -2.4465 -1.2234 33 1 9.3518 -0.8101 -1.7420 34 1 11.2753 -0.9655 -0.0167 35 1 9.9364 0.1414 0.3781 36 1 10.3080 -2.4639 4.0951 37 1 9.8594 -3.8847 3.1212 38 1 12.0753 -3.1286 5.7966 39 1 14.2081 -4.6593 5.8113 40 1 14.4041 -5.8178 3.4166 41 1 8.4243 -0.6611 2.5105 42 1 8.4814 -2.4264 2.7629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689354943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:26 Heat of formation + Delta-G solvation = 100.282049 kcal Electronic energy + Delta-G solvation = -26845.945814 eV Core-core repulsion = 22954.827023 eV Total energy + Delta-G solvation = -3891.118791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.19529 -41.54821 -40.37257 -37.74574 -36.62351 -34.63118 -33.83318 -33.28452 -31.45034 -30.96434 -28.83245 -28.74509 -26.79925 -25.14133 -24.28976 -23.33486 -22.17127 -21.94659 -20.82817 -20.07677 -19.37054 -19.06977 -18.33320 -18.00493 -17.06077 -16.91600 -16.80261 -16.22617 -16.18024 -15.69381 -15.25362 -15.20387 -15.00276 -14.87609 -14.57430 -14.49553 -14.18171 -14.06600 -14.02412 -13.64351 -13.60203 -13.29183 -13.24731 -13.10625 -12.87981 -12.46214 -12.20778 -12.18367 -11.86018 -11.57417 -11.27136 -11.09439 -10.67253 -10.34694 -10.28387 -9.97925 -9.70063 -9.50256 -9.41425 -8.06036 -5.42323 -0.43627 0.24831 0.68996 0.94466 1.32553 1.35333 1.37770 1.43701 1.44854 1.58822 1.84437 2.01388 2.44570 2.82662 3.17538 3.25752 3.58201 3.66235 3.69068 3.76342 3.79527 4.02345 4.06153 4.14117 4.20888 4.23028 4.27406 4.44229 4.50034 4.66385 4.71515 4.75216 4.79695 4.81817 4.92597 5.08820 5.17390 5.18081 5.69092 5.73642 6.01477 6.15527 6.17202 6.65567 6.79771 6.90548 6.98930 7.71028 7.90933 9.14464 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019691 B = 0.002247 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.629387 B =12459.857837 C =12865.263159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.055 4.055 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.261 1.261 7 C -0.236 4.236 8 H 0.067 0.933 9 N -0.749 5.749 10 C 0.230 3.770 11 C 0.032 3.968 12 N -0.473 5.473 13 C 0.027 3.973 14 C -0.223 4.223 15 S 0.163 5.837 16 C -0.051 4.051 17 C 0.117 3.883 18 N -0.607 5.607 19 C 0.510 3.490 20 O -0.553 6.553 21 C 0.110 3.890 22 N -0.376 5.376 23 C 0.056 3.944 24 C -0.284 4.284 25 C 0.028 3.972 26 N -0.327 5.327 27 C 0.194 3.806 28 H 0.260 0.740 29 H 0.365 0.635 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.172 0.828 37 H 0.126 0.874 38 H 0.215 0.785 39 H 0.170 0.830 40 H 0.198 0.802 41 H 0.116 0.884 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.903 -4.317 7.554 30.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.247 4.247 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.367 4.367 8 H 0.085 0.915 9 N -0.396 5.396 10 C 0.102 3.898 11 C -0.246 4.246 12 N -0.189 5.189 13 C -0.106 4.106 14 C -0.345 4.345 15 S 0.421 5.579 16 C -0.092 4.092 17 C -0.007 4.007 18 N -0.341 5.341 19 C 0.297 3.703 20 O -0.429 6.429 21 C -0.014 4.014 22 N -0.159 5.159 23 C -0.089 4.089 24 C -0.313 4.313 25 C -0.159 4.159 26 N -0.148 5.148 27 C 0.069 3.931 28 H 0.069 0.931 29 H 0.198 0.802 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.190 0.810 37 H 0.144 0.856 38 H 0.231 0.769 39 H 0.187 0.813 40 H 0.215 0.785 41 H 0.134 0.866 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 28.070 -4.552 5.522 28.968 hybrid contribution 0.542 1.001 1.134 1.607 sum 28.612 -3.551 6.656 29.590 Atomic orbital electron populations 1.69857 1.06901 1.26827 1.59041 1.25422 0.96054 1.00996 1.02269 0.85487 0.78416 0.80114 0.78256 1.20018 1.21858 1.18580 1.18977 0.81722 0.93978 1.42025 0.91508 1.42574 1.02708 1.03039 1.91269 1.19238 0.80896 0.88711 1.00999 1.26790 1.01321 1.04842 0.91620 1.65748 1.05230 1.15122 1.32763 1.21320 0.90266 1.04196 0.94825 1.26323 1.01025 1.11031 0.96095 1.83910 0.98251 1.64461 1.11315 1.20601 0.86420 1.03011 0.99143 1.21711 1.01025 0.95605 0.82326 1.48080 1.09805 1.48818 1.27371 1.20938 0.84155 0.78760 0.86424 1.90773 1.23660 1.62747 1.65747 1.21863 0.84923 0.97626 0.97010 1.48302 1.21998 1.35307 1.10281 1.23281 0.95081 1.01059 0.89477 1.21887 1.02840 1.06479 1.00086 1.24402 0.97458 1.00541 0.93469 1.77421 1.07654 1.09280 1.20415 1.20517 0.76048 1.05790 0.90765 0.93108 0.80210 0.92127 0.92692 0.89802 0.87013 0.88329 0.88550 0.81022 0.85616 0.76877 0.81268 0.78547 0.86593 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.24 13.97 21.65 0.30 -60.93 16 2 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 3 Si 0.95 44.78 27.74 68.60 1.90 46.68 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 6 H -0.26 -11.41 6.52 99.48 0.65 -10.76 16 7 C -0.24 -13.17 10.47 84.03 0.88 -12.29 16 8 H 0.07 4.01 8.06 -2.91 -0.02 3.99 16 9 N -0.75 -34.62 5.40 -347.19 -1.87 -36.50 16 10 C 0.23 8.68 6.84 85.64 0.59 9.26 16 11 C 0.03 1.03 6.75 88.57 0.60 1.63 16 12 N -0.47 -14.24 10.51 -176.95 -1.86 -16.10 16 13 C 0.03 0.63 6.87 42.15 0.29 0.92 16 14 C -0.22 -4.89 6.43 24.95 0.16 -4.73 16 15 S 0.16 4.16 23.17 -56.49 -1.31 2.85 16 16 C -0.05 -0.82 6.44 30.04 0.19 -0.63 16 17 C 0.12 1.75 6.41 86.37 0.55 2.31 16 18 N -0.61 -9.45 2.92 -819.82 -2.39 -11.85 16 19 C 0.51 9.54 7.73 87.65 0.68 10.22 16 20 O -0.55 -15.47 15.15 -3.05 -0.05 -15.52 16 21 C 0.11 1.36 5.39 85.63 0.46 1.82 16 22 N -0.38 -6.87 3.39 -351.81 -1.19 -8.06 16 23 C 0.06 0.72 11.45 83.54 0.96 1.67 16 24 C -0.28 -4.12 10.80 21.99 0.24 -3.88 16 25 C 0.03 0.53 12.03 85.24 1.03 1.56 16 26 N -0.33 -8.14 11.66 -57.02 -0.66 -8.81 16 27 C 0.19 2.77 6.65 86.04 0.57 3.34 16 28 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 29 H 0.36 16.53 5.52 -92.71 -0.51 16.02 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 1.65 7.01 -2.39 -0.02 1.63 16 35 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.17 0.46 8.02 -2.38 -0.02 0.44 16 37 H 0.13 1.32 7.57 -2.39 -0.02 1.30 16 38 H 0.21 0.72 8.06 -2.91 -0.02 0.70 16 39 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.20 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.13 1.21 6.15 -2.38 -0.01 1.19 16 Total: -1.00 -82.92 368.05 1.02 -81.89 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.50 Total: 17.88 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 7.66 Total: 8.47 kcal Atomic # 7 Polarization: -134.57 SS G_CDS: -7.68 Total: -142.25 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.05 Total: -15.52 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.68 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.31 Total: 2.85 kcal Total: -82.92 1.02 -81.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689354943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.176 kcal (2) G-P(sol) polarization free energy of solvation -82.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds