Wall clock time and date at job start Wed Apr 1 2020 04:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00082 * 2 1 4 4 H 1.48498 * 109.47179 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47074 * 119.99651 * 3 2 1 6 6 H 1.48501 * 109.47468 * 239.99821 * 3 2 1 7 7 C 1.38816 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00351 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99513 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46857 * 174.94329 * 10 9 7 12 12 H 1.09000 * 109.87166 * 54.96362 * 11 10 9 13 13 C 1.54325 * 109.88224 * 293.78599 * 11 10 9 14 14 C 1.55156 * 102.94253 * 218.38854 * 13 11 10 15 15 C 1.54913 * 101.58151 * 35.50427 * 14 13 11 16 16 N 1.47016 * 109.88179 * 175.98084 * 11 10 9 17 17 C 1.34780 * 125.64871 * 298.32447 * 16 11 10 18 18 O 1.21627 * 119.99718 * 4.71910 * 17 16 11 19 19 C 1.47346 * 120.00162 * 184.72604 * 17 16 11 20 20 C 1.36298 * 122.54135 * 179.73821 * 19 17 16 21 21 S 1.71011 * 109.01597 * 179.86323 * 20 19 17 22 22 C 1.75970 * 90.63430 * 0.32222 * 21 20 19 23 23 C 1.47383 * 125.23313 * 179.82540 * 22 21 20 24 24 N 1.31607 * 125.85722 * 179.97438 * 23 22 21 25 25 C 1.33632 * 109.24454 * 179.97438 * 24 23 22 26 26 C 1.35003 * 108.42160 * 0.02562 * 25 24 23 27 27 N 1.36584 * 125.85812 * 359.69972 * 23 22 21 28 28 H 0.97004 * 126.50914 * 0.02562 * 27 23 22 29 29 N 1.29955 * 109.52905 * 359.80749 * 22 21 20 30 30 H 0.97005 * 119.99709 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00623 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47493 * 294.94407 * 10 9 7 33 33 H 1.09001 * 109.47104 * 54.94846 * 10 9 7 34 34 H 1.08998 * 110.72023 * 336.75268 * 13 11 10 35 35 H 1.09008 * 110.71889 * 100.02778 * 13 11 10 36 36 H 1.08998 * 111.00743 * 277.43275 * 14 13 11 37 37 H 1.08999 * 111.00368 * 153.57647 * 14 13 11 38 38 H 1.08996 * 110.36532 * 204.15221 * 15 14 13 39 39 H 1.09002 * 110.45781 * 81.87528 * 15 14 13 40 40 H 1.08001 * 125.49559 * 359.97438 * 20 19 17 41 41 H 1.07996 * 125.78595 * 179.97438 * 25 24 23 42 42 H 1.07997 * 126.46763 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0688 -4.8170 0.1257 12 1 0.3179 -4.7517 -0.6617 13 6 0.3876 -4.7763 1.5099 14 6 0.2898 -6.2765 1.8933 15 6 1.6020 -6.8377 1.2908 16 7 1.7847 -6.0974 0.0291 17 6 2.4906 -6.5242 -1.0368 18 8 2.6456 -5.7926 -1.9960 19 6 3.0745 -7.8771 -1.0401 20 6 3.7926 -8.3631 -2.0916 21 16 4.3058 -9.9534 -1.7283 22 6 3.5048 -9.8753 -0.1634 23 6 3.4820 -10.9591 0.8352 24 7 2.8877 -10.9139 2.0085 25 6 3.0761 -12.0750 2.6427 26 6 3.8124 -12.8806 1.8480 27 7 4.0696 -12.1846 0.6994 28 1 4.5755 -12.5005 -0.0656 29 7 2.9367 -8.7149 -0.0236 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6144 -3.7543 -0.9339 33 1 2.7516 -3.6767 0.8391 34 1 1.0039 -4.2343 2.2272 35 1 -0.6048 -4.3310 1.4384 36 1 -0.5817 -6.7416 1.4326 37 1 0.2716 -6.4027 2.9758 38 1 1.5028 -7.9050 1.0935 39 1 2.4396 -6.6532 1.9636 40 1 4.0049 -7.8293 -3.0061 41 1 2.7033 -12.3259 3.6247 42 1 4.1334 -13.8865 2.0747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733344436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:59 Heat of formation + Delta-G solvation = 103.815268 kcal Electronic energy + Delta-G solvation = -27337.329713 eV Core-core repulsion = 23446.364133 eV Total energy + Delta-G solvation = -3890.965579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.47059 -40.72827 -39.06354 -37.24473 -34.66691 -33.13436 -32.15621 -31.51913 -31.20639 -29.32897 -28.47302 -26.28419 -24.87241 -24.00553 -22.56878 -22.26689 -21.92764 -20.83791 -20.22772 -19.49878 -18.71833 -18.11809 -17.09998 -16.52228 -16.17352 -15.96014 -15.66056 -15.10678 -14.79301 -14.67336 -14.26333 -14.06341 -13.78363 -13.63507 -13.60994 -13.51257 -13.26435 -12.90556 -12.61159 -12.34192 -11.96704 -11.50967 -11.16418 -10.73413 -10.71624 -10.57979 -10.52572 -10.48269 -10.38316 -10.34304 -10.06365 -9.91722 -9.79867 -9.75615 -9.11505 -8.74875 -8.59829 -8.31758 -6.87391 -5.99725 -2.97855 -0.20999 0.53353 0.99976 1.21481 1.93686 2.16538 2.75846 3.08168 3.33778 3.54815 3.59004 3.63457 3.80420 4.09125 4.45064 4.68419 4.76521 4.77978 4.84059 4.85547 4.93432 5.04125 5.21168 5.30391 5.47166 5.55270 5.66761 5.72241 5.87185 6.01095 6.05916 6.12463 6.14218 6.24008 6.25971 6.48219 6.55893 6.59702 6.84786 7.00136 7.05332 7.47813 7.68453 7.92304 8.23941 8.86557 9.34510 10.20583 10.36324 11.49200 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019344 B = 0.002396 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.102650 B =11682.201229 C =12588.814892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.048 4.048 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.324 4.324 8 H 0.063 0.937 9 N -0.739 5.739 10 C 0.151 3.849 11 C 0.130 3.870 12 H 0.075 0.925 13 C -0.121 4.121 14 C -0.135 4.135 15 C 0.098 3.902 16 N -0.591 5.591 17 C 0.599 3.401 18 O -0.523 6.523 19 C 0.028 3.972 20 C -0.201 4.201 21 S 0.178 5.822 22 C 0.112 3.888 23 C 0.261 3.739 24 N -0.429 5.429 25 C -0.022 4.022 26 C -0.027 4.027 27 N -0.560 5.560 28 H 0.422 0.578 29 N -0.390 5.390 30 H 0.254 0.746 31 H 0.366 0.634 32 H 0.035 0.965 33 H 0.022 0.978 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.199 0.801 41 H 0.180 0.820 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.698 -33.697 1.829 34.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.245 4.245 3 Si 0.912 3.088 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.223 1.223 7 C -0.455 4.455 8 H 0.081 0.919 9 N -0.385 5.385 10 C 0.023 3.977 11 C 0.027 3.973 12 H 0.093 0.907 13 C -0.159 4.159 14 C -0.173 4.173 15 C -0.025 4.025 16 N -0.323 5.323 17 C 0.384 3.616 18 O -0.399 6.399 19 C -0.109 4.109 20 C -0.343 4.343 21 S 0.434 5.566 22 C -0.165 4.165 23 C -0.001 4.001 24 N -0.149 5.149 25 C -0.173 4.173 26 C -0.163 4.163 27 N -0.165 5.165 28 H 0.260 0.740 29 N -0.106 5.106 30 H 0.065 0.935 31 H 0.199 0.801 32 H 0.053 0.947 33 H 0.040 0.960 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.216 0.784 41 H 0.197 0.803 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 8.746 -31.581 1.525 32.806 hybrid contribution 0.364 -1.764 -0.660 1.918 sum 9.110 -33.345 0.864 34.578 Atomic orbital electron populations 1.70876 1.05957 1.28282 1.54128 1.25757 0.97107 1.00871 1.00763 0.83229 0.74164 0.75594 0.75816 1.21063 1.22352 1.22341 1.20018 0.91984 0.85705 1.47768 0.91915 1.42207 1.04740 1.00694 1.90902 1.20920 0.93258 0.84521 0.99027 1.21894 0.94373 0.82956 0.98098 0.90661 1.22670 1.01559 0.95963 0.95664 1.22827 0.97372 0.95976 1.01140 1.22690 0.97129 0.98455 0.84195 1.48265 1.49774 1.19496 1.14751 1.16629 0.78695 0.83891 0.82420 1.90878 1.59583 1.54939 1.34518 1.20573 1.03338 0.96927 0.90075 1.26887 1.02932 0.99137 1.05383 1.83571 1.49413 1.11044 1.12548 1.24023 1.02850 0.94166 0.95483 1.19435 1.01880 0.84797 0.93997 1.70539 1.18704 1.22995 1.02683 1.22579 1.02949 0.90198 1.01604 1.23010 1.05690 1.00211 0.87388 1.43360 1.42969 1.12747 1.17413 0.73979 1.66995 1.17292 1.00267 1.26041 0.93498 0.80087 0.94678 0.96029 0.89932 0.90069 0.91034 0.89979 0.87374 0.91632 0.78397 0.80280 0.79525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.42 13.70 55.49 0.76 -29.66 16 2 C -0.05 -1.47 5.50 -17.43 -0.10 -1.56 16 3 Si 1.08 27.28 29.92 -169.99 -5.09 22.19 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.32 -9.80 9.99 -15.06 -0.15 -9.95 16 8 H 0.06 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.74 -20.22 5.40 -59.90 -0.32 -20.54 16 10 C 0.15 3.56 5.64 -4.04 -0.02 3.53 16 11 C 0.13 2.49 2.96 -66.95 -0.20 2.29 16 12 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 13 C -0.12 -1.98 6.18 -24.90 -0.15 -2.13 16 14 C -0.13 -1.78 7.09 -24.58 -0.17 -1.96 16 15 C 0.10 1.42 6.20 -2.53 -0.02 1.41 16 16 N -0.59 -10.22 3.06 -164.30 -0.50 -10.73 16 17 C 0.60 10.65 7.65 -12.55 -0.10 10.55 16 18 O -0.52 -10.96 15.49 5.25 0.08 -10.87 16 19 C 0.03 0.39 6.61 -84.59 -0.56 -0.17 16 20 C -0.20 -2.16 10.63 30.03 0.32 -1.84 16 21 S 0.18 1.26 23.17 -107.50 -2.49 -1.23 16 22 C 0.11 1.16 7.47 -14.63 -0.11 1.05 16 23 C 0.26 2.46 8.05 -154.62 -1.25 1.21 16 24 N -0.43 -4.73 11.28 -11.30 -0.13 -4.86 16 25 C -0.02 -0.16 11.84 -17.92 -0.21 -0.37 16 26 C -0.03 -0.12 12.03 -16.51 -0.20 -0.32 16 27 N -0.56 -2.94 6.22 -10.62 -0.07 -3.01 16 28 H 0.42 0.86 8.96 -40.82 -0.37 0.49 16 29 N -0.39 -5.11 7.19 -8.01 -0.06 -5.16 16 30 H 0.25 8.03 6.77 -40.82 -0.28 7.75 16 31 H 0.37 10.01 6.41 -40.82 -0.26 9.75 16 32 H 0.04 0.92 6.59 -51.93 -0.34 0.58 16 33 H 0.02 0.52 8.05 -51.93 -0.42 0.11 16 34 H 0.08 1.46 7.78 -51.93 -0.40 1.05 16 35 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.11 1.55 5.71 -51.93 -0.30 1.25 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.20 1.93 8.01 -52.49 -0.42 1.51 16 41 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.19 0.07 8.06 -52.49 -0.42 -0.35 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -39.24 367.51 -10.14 -49.37 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -4.95 Total: 7.22 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -2.91 Total: 1.74 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -0.32 Total: -73.96 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 27.28 SS G_CDS: -5.09 Total: 22.19 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.49 Total: -1.23 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.24 -10.14 -49.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733344436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.189 kcal (2) G-P(sol) polarization free energy of solvation -39.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds