Wall clock time and date at job start Wed Apr 1 2020 04:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00082 * 2 1 4 4 H 1.48498 * 109.47179 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47074 * 119.99651 * 3 2 1 6 6 H 1.48501 * 109.47468 * 239.99821 * 3 2 1 7 7 C 1.38816 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00351 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99513 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46857 * 174.94329 * 10 9 7 12 12 H 1.09000 * 109.87166 * 54.96362 * 11 10 9 13 13 C 1.54325 * 109.88224 * 293.78599 * 11 10 9 14 14 C 1.55156 * 102.94253 * 218.38854 * 13 11 10 15 15 C 1.54913 * 101.58151 * 35.50427 * 14 13 11 16 16 N 1.47016 * 109.88179 * 175.98084 * 11 10 9 17 17 C 1.34780 * 125.64871 * 298.32447 * 16 11 10 18 18 O 1.21627 * 119.99718 * 4.71910 * 17 16 11 19 19 C 1.47346 * 120.00162 * 184.72604 * 17 16 11 20 20 C 1.36298 * 122.54135 * 179.73821 * 19 17 16 21 21 S 1.71011 * 109.01597 * 179.86323 * 20 19 17 22 22 C 1.75970 * 90.63430 * 0.32222 * 21 20 19 23 23 C 1.47383 * 125.23313 * 179.82540 * 22 21 20 24 24 N 1.31607 * 125.85722 * 179.97438 * 23 22 21 25 25 C 1.33632 * 109.24454 * 179.97438 * 24 23 22 26 26 C 1.35003 * 108.42160 * 0.02562 * 25 24 23 27 27 N 1.36584 * 125.85812 * 359.69972 * 23 22 21 28 28 H 0.97004 * 126.50914 * 0.02562 * 27 23 22 29 29 N 1.29955 * 109.52905 * 359.80749 * 22 21 20 30 30 H 0.97005 * 119.99709 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00623 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47493 * 294.94407 * 10 9 7 33 33 H 1.09001 * 109.47104 * 54.94846 * 10 9 7 34 34 H 1.08998 * 110.72023 * 336.75268 * 13 11 10 35 35 H 1.09008 * 110.71889 * 100.02778 * 13 11 10 36 36 H 1.08998 * 111.00743 * 277.43275 * 14 13 11 37 37 H 1.08999 * 111.00368 * 153.57647 * 14 13 11 38 38 H 1.08996 * 110.36532 * 204.15221 * 15 14 13 39 39 H 1.09002 * 110.45781 * 81.87528 * 15 14 13 40 40 H 1.08001 * 125.49559 * 359.97438 * 20 19 17 41 41 H 1.07996 * 125.78595 * 179.97438 * 25 24 23 42 42 H 1.07997 * 126.46763 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0688 -4.8170 0.1257 12 1 0.3179 -4.7517 -0.6617 13 6 0.3876 -4.7763 1.5099 14 6 0.2898 -6.2765 1.8933 15 6 1.6020 -6.8377 1.2908 16 7 1.7847 -6.0974 0.0291 17 6 2.4906 -6.5242 -1.0368 18 8 2.6456 -5.7926 -1.9960 19 6 3.0745 -7.8771 -1.0401 20 6 3.7926 -8.3631 -2.0916 21 16 4.3058 -9.9534 -1.7283 22 6 3.5048 -9.8753 -0.1634 23 6 3.4820 -10.9591 0.8352 24 7 2.8877 -10.9139 2.0085 25 6 3.0761 -12.0750 2.6427 26 6 3.8124 -12.8806 1.8480 27 7 4.0696 -12.1846 0.6994 28 1 4.5755 -12.5005 -0.0656 29 7 2.9367 -8.7149 -0.0236 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6144 -3.7543 -0.9339 33 1 2.7516 -3.6767 0.8391 34 1 1.0039 -4.2343 2.2272 35 1 -0.6048 -4.3310 1.4384 36 1 -0.5817 -6.7416 1.4326 37 1 0.2716 -6.4027 2.9758 38 1 1.5028 -7.9050 1.0935 39 1 2.4396 -6.6532 1.9636 40 1 4.0049 -7.8293 -3.0061 41 1 2.7033 -12.3259 3.6247 42 1 4.1334 -13.8865 2.0747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733344436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:58 Heat of formation + Delta-G solvation = 74.815443 kcal Electronic energy + Delta-G solvation = -27338.587239 eV Core-core repulsion = 23446.364133 eV Total energy + Delta-G solvation = -3892.223106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.96554 -41.86975 -40.20803 -38.66704 -36.77946 -33.65281 -33.61945 -32.88619 -32.50614 -30.25458 -29.98484 -27.19988 -26.57346 -25.41298 -24.39559 -23.17283 -22.73194 -21.89944 -21.26594 -20.29601 -19.89949 -19.30225 -18.86695 -17.81608 -17.31062 -17.08559 -16.64089 -16.25552 -15.97922 -15.73143 -15.59862 -15.27231 -15.13855 -15.06857 -14.84191 -14.60254 -14.32028 -14.24301 -13.91478 -13.67128 -13.24882 -13.10816 -12.76878 -12.62025 -12.28320 -12.02735 -11.89297 -11.76100 -11.43529 -11.33944 -11.31775 -11.12713 -11.06665 -10.96192 -10.80232 -10.45516 -9.81295 -9.18765 -9.11297 -8.46202 -5.39972 -0.96598 -0.15906 0.20253 0.37563 1.27821 1.54899 1.64729 1.66137 1.82249 1.84623 2.02178 2.30420 2.68185 2.88416 3.27778 3.34316 3.55634 3.56950 3.76576 3.85441 3.93655 3.94979 4.10294 4.18480 4.22403 4.38589 4.40463 4.47306 4.60429 4.67936 4.80231 4.90690 4.97177 4.99925 5.01968 5.05407 5.24989 5.35652 5.50353 5.67938 6.09249 6.30399 6.38232 6.44103 6.88324 6.98457 7.02427 7.90567 8.03854 9.05748 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019344 B = 0.002396 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.102650 B =11682.201229 C =12588.814892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.100 4.100 3 Si 1.131 2.869 4 H -0.286 1.286 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.340 4.340 8 H 0.058 0.942 9 N -0.746 5.746 10 C 0.161 3.839 11 C 0.136 3.864 12 H 0.060 0.940 13 C -0.115 4.115 14 C -0.119 4.119 15 C 0.103 3.897 16 N -0.594 5.594 17 C 0.591 3.409 18 O -0.570 6.570 19 C 0.000 4.000 20 C -0.215 4.215 21 S 0.305 5.695 22 C 0.097 3.903 23 C 0.227 3.773 24 N -0.473 5.473 25 C -0.055 4.055 26 C 0.011 3.989 27 N -0.544 5.544 28 H 0.438 0.562 29 N -0.422 5.422 30 H 0.244 0.756 31 H 0.364 0.636 32 H 0.006 0.994 33 H 0.015 0.985 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.061 0.939 40 H 0.203 0.797 41 H 0.195 0.805 42 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.235 -37.124 2.419 38.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.291 4.291 3 Si 0.955 3.045 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.471 4.471 8 H 0.076 0.924 9 N -0.392 5.392 10 C 0.033 3.967 11 C 0.032 3.968 12 H 0.078 0.922 13 C -0.153 4.153 14 C -0.157 4.157 15 C -0.019 4.019 16 N -0.325 5.325 17 C 0.378 3.622 18 O -0.450 6.450 19 C -0.137 4.137 20 C -0.359 4.359 21 S 0.562 5.438 22 C -0.180 4.180 23 C -0.034 4.034 24 N -0.195 5.195 25 C -0.206 4.206 26 C -0.127 4.127 27 N -0.150 5.150 28 H 0.280 0.720 29 N -0.139 5.139 30 H 0.055 0.945 31 H 0.197 0.803 32 H 0.024 0.976 33 H 0.033 0.967 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.220 0.780 41 H 0.212 0.788 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 10.313 -35.086 2.110 36.631 hybrid contribution -0.006 -0.956 -0.858 1.285 sum 10.306 -36.042 1.252 37.508 Atomic orbital electron populations 1.70985 1.06915 1.27874 1.55758 1.27340 0.97201 1.04559 0.99982 0.82605 0.73418 0.71351 0.77135 1.21121 1.20087 1.20733 1.20328 0.92097 0.87068 1.47646 0.92402 1.42305 1.04744 1.01349 1.90765 1.20842 0.93856 0.85000 0.97017 1.21658 0.93089 0.82566 0.99476 0.92196 1.22584 1.00908 0.98425 0.93393 1.22832 0.97066 0.92940 1.02821 1.22780 0.97669 0.98602 0.82844 1.48391 1.49530 1.18779 1.15809 1.17304 0.77985 0.85272 0.81630 1.90827 1.61359 1.56749 1.36057 1.20008 1.05888 0.95749 0.92095 1.27185 1.02048 1.01875 1.04802 1.83033 1.45810 1.06476 1.08451 1.24333 1.02551 0.93659 0.97434 1.19275 1.04071 0.86066 0.94004 1.70419 1.19852 1.25244 1.03951 1.23045 1.04628 0.89979 1.02946 1.23748 1.02367 1.00979 0.85604 1.43344 1.42053 1.11387 1.18236 0.72026 1.66868 1.19183 1.01405 1.26404 0.94532 0.80349 0.97566 0.96683 0.91270 0.89740 0.89706 0.87285 0.86636 0.92033 0.78036 0.78843 0.74819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.38 13.70 21.65 0.30 -63.09 16 2 C -0.10 -6.17 5.50 84.86 0.47 -5.70 16 3 Si 1.13 55.13 29.92 68.60 2.05 57.18 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.34 -21.21 9.99 84.03 0.84 -20.37 16 8 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 9 N -0.75 -42.73 5.40 -343.43 -1.85 -44.59 16 10 C 0.16 8.06 5.64 86.38 0.49 8.54 16 11 C 0.14 5.53 2.96 45.34 0.13 5.66 16 12 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 13 C -0.11 -3.87 6.18 31.78 0.20 -3.68 16 14 C -0.12 -3.06 7.09 31.99 0.23 -2.83 16 15 C 0.10 3.04 6.20 86.86 0.54 3.58 16 16 N -0.59 -21.70 3.06 -791.96 -2.43 -24.13 16 17 C 0.59 22.41 7.65 86.64 0.66 23.08 16 18 O -0.57 -25.77 15.49 -4.12 -0.06 -25.83 16 19 C 0.00 -0.01 6.61 41.00 0.27 0.26 16 20 C -0.22 -4.58 10.63 67.37 0.72 -3.86 16 21 S 0.30 3.53 23.17 -56.49 -1.31 2.22 16 22 C 0.10 1.88 7.47 87.38 0.65 2.53 16 23 C 0.23 3.89 8.05 136.30 1.10 4.99 16 24 N -0.47 -9.99 11.28 -189.66 -2.14 -12.12 16 25 C -0.06 -0.68 11.84 83.67 0.99 0.31 16 26 C 0.01 0.05 12.03 83.18 1.00 1.05 16 27 N -0.54 -3.82 6.22 -187.52 -1.17 -4.99 16 28 H 0.44 -0.11 8.96 -92.71 -0.83 -0.94 16 29 N -0.42 -11.15 7.19 -179.26 -1.29 -12.44 16 30 H 0.24 15.95 6.77 -92.70 -0.63 15.32 16 31 H 0.36 20.89 6.41 -92.71 -0.59 20.30 16 32 H 0.01 0.36 6.59 -2.39 -0.02 0.34 16 33 H 0.02 0.77 8.05 -2.39 -0.02 0.76 16 34 H 0.07 2.51 7.78 -2.39 -0.02 2.50 16 35 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.12 3.36 5.71 -2.39 -0.01 3.35 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.20 3.97 8.01 -2.91 -0.02 3.95 16 41 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.24 -1.24 8.06 -2.91 -0.02 -1.26 16 Total: -1.00 -90.77 367.51 0.19 -90.58 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.19 Total: 23.65 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 8.28 Total: 13.56 kcal Atomic # 7 Polarization: -152.78 SS G_CDS: -8.58 Total: -161.35 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.06 Total: -25.83 kcal Atomic # 14 Polarization: 55.13 SS G_CDS: 2.05 Total: 57.18 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.31 Total: 2.22 kcal Total: -90.77 0.19 -90.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733344436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.393 kcal (2) G-P(sol) polarization free energy of solvation -90.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds