Wall clock time and date at job start Wed Apr 1 2020 04:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00251 * 2 1 4 4 H 1.48500 * 109.47079 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47204 * 119.99982 * 3 2 1 6 6 H 1.48500 * 109.47171 * 239.99918 * 3 2 1 7 7 C 1.38817 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99946 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46848 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.88847 * 57.42876 * 11 10 9 13 13 C 1.55156 * 111.00641 * 181.35071 * 11 10 9 14 14 C 1.54320 * 102.94602 * 153.57431 * 13 11 10 15 15 N 1.47024 * 107.26973 * 337.81617 * 14 13 11 16 16 C 1.34784 * 125.64507 * 178.97612 * 15 14 13 17 17 O 1.21742 * 119.99666 * 179.97438 * 16 15 14 18 18 C 1.46212 * 120.00112 * 359.95070 * 16 15 14 19 19 S 1.75815 * 125.47413 * 354.45092 * 18 16 15 20 20 C 1.70578 * 91.66831 * 179.97438 * 19 18 16 21 21 C 1.33588 * 111.16991 * 0.02562 * 20 19 18 22 22 C 1.37325 * 125.47360 * 174.14396 * 18 16 15 23 23 N 1.39960 * 123.48595 * 0.03469 * 22 18 16 24 24 C 1.36157 * 125.94708 * 130.66498 * 23 22 18 25 25 C 1.35354 * 106.04830 * 179.90497 * 24 23 22 26 26 N 1.33788 * 106.54134 * 0.35289 * 25 24 23 27 27 N 1.28601 * 109.06580 * 359.77192 * 26 25 24 28 28 C 1.47420 * 108.70486 * 358.93005 * 15 14 13 29 29 H 0.96997 * 120.00167 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99928 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47223 * 300.00134 * 10 9 7 32 32 H 1.09001 * 109.47085 * 60.00454 * 10 9 7 33 33 H 1.09002 * 110.72389 * 271.94531 * 13 11 10 34 34 H 1.08997 * 110.71611 * 35.21383 * 13 11 10 35 35 H 1.08989 * 109.88991 * 218.38894 * 14 13 11 36 36 H 1.09001 * 110.00865 * 97.29460 * 14 13 11 37 37 H 1.08002 * 124.41608 * 179.97438 * 20 19 18 38 38 H 1.07996 * 122.45936 * 180.02562 * 21 20 19 39 39 H 1.08004 * 126.97443 * 0.04259 * 24 23 22 40 40 H 1.08004 * 126.73327 * 180.09364 * 25 24 23 41 41 H 1.08995 * 110.37450 * 265.29529 * 28 15 14 42 42 H 1.09007 * 110.36480 * 142.96831 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0637 -4.8197 0.0035 12 1 0.3934 -4.7594 -0.8539 13 6 1.8028 -6.1835 0.0377 14 6 0.7724 -7.1186 0.7049 15 7 -0.1547 -6.2717 1.4697 16 6 -1.2126 -6.7087 2.1813 17 8 -1.9147 -5.9136 2.7787 18 6 -1.5174 -8.1377 2.2353 19 16 -0.6904 -9.3925 1.3227 20 6 -1.6744 -10.6071 2.0055 21 6 -2.5602 -10.0870 2.8596 22 6 -2.4915 -8.7161 3.0114 23 7 -3.3311 -7.9906 3.8645 24 6 -4.6875 -8.0918 3.9269 25 6 -5.0843 -7.2182 4.8816 26 7 -3.9754 -6.6296 5.3439 27 7 -2.9559 -7.1076 4.7228 28 6 0.2652 -4.8654 1.3302 29 1 -0.4850 -0.8400 -0.0004 30 1 0.3555 -2.3880 0.0016 31 1 2.6839 -3.7150 -0.8888 32 1 2.6853 -3.7142 0.8912 33 1 2.0341 -6.5223 -0.9722 34 1 2.7089 -6.1159 0.6399 35 1 1.2802 -7.8117 1.3754 36 1 0.2247 -7.6738 -0.0566 37 1 -1.5926 -11.6594 1.7765 38 1 -3.2740 -10.6945 3.3959 39 1 -5.3185 -8.7394 3.3361 40 1 -6.0978 -7.0300 5.2039 41 1 0.9014 -4.5747 2.1661 42 1 -0.6064 -4.2134 1.2711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752940159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:34 Heat of formation + Delta-G solvation = 107.988651 kcal Electronic energy + Delta-G solvation = -27586.032262 eV Core-core repulsion = 23695.247654 eV Total energy + Delta-G solvation = -3890.784608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.37422 -41.37677 -39.69509 -38.58677 -36.80660 -34.63094 -34.22412 -32.21898 -32.06735 -31.01277 -29.91531 -27.56036 -26.37376 -25.22628 -23.94095 -23.79213 -23.23390 -22.16656 -21.42515 -20.75229 -19.61460 -19.13229 -18.32250 -17.67302 -17.56940 -16.82933 -16.51077 -16.42994 -16.00688 -15.86009 -15.78407 -15.47494 -15.17338 -14.97598 -14.88015 -14.49521 -14.13501 -13.99568 -13.73618 -13.65182 -13.27053 -12.84049 -12.69511 -12.59462 -12.58414 -12.12155 -12.05758 -11.91810 -11.84010 -11.77996 -11.66695 -11.38187 -11.24266 -10.95920 -10.41413 -10.20725 -9.92025 -9.57732 -9.15382 -8.43475 -5.37697 -0.99461 0.02231 0.46710 0.69888 1.13836 1.46450 1.55772 1.57752 1.64724 1.67061 1.82885 1.84200 2.69617 3.14171 3.37246 3.43070 3.47845 3.55272 3.69803 3.73468 3.94651 4.01231 4.06687 4.11621 4.20292 4.23876 4.36180 4.44984 4.48645 4.62003 4.68082 4.68584 4.78999 4.85797 4.90414 4.93039 5.03146 5.10883 5.19335 5.28077 5.55437 5.70567 6.21701 6.43716 6.83724 7.04901 7.44620 7.94919 8.06656 9.08067 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.002761 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.705204 B =10138.679113 C =11945.693781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.110 4.110 3 Si 1.130 2.870 4 H -0.295 1.295 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.334 4.334 8 H 0.073 0.927 9 N -0.762 5.762 10 C 0.169 3.831 11 C -0.097 4.097 12 H 0.081 0.919 13 C -0.104 4.104 14 C 0.079 3.921 15 N -0.613 5.613 16 C 0.580 3.420 17 O -0.564 6.564 18 C -0.298 4.298 19 S 0.369 5.631 20 C -0.210 4.210 21 C -0.149 4.149 22 C 0.149 3.851 23 N -0.237 5.237 24 C -0.037 4.037 25 C -0.059 4.059 26 N -0.317 5.317 27 N -0.088 5.088 28 C 0.124 3.876 29 H 0.240 0.760 30 H 0.357 0.643 31 H 0.040 0.960 32 H 0.024 0.976 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.228 0.772 38 H 0.178 0.822 39 H 0.239 0.761 40 H 0.226 0.774 41 H 0.055 0.945 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.592 -34.678 -0.774 34.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.300 4.300 3 Si 0.954 3.046 4 H -0.222 1.222 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.091 0.909 9 N -0.406 5.406 10 C 0.042 3.958 11 C -0.116 4.116 12 H 0.100 0.900 13 C -0.142 4.142 14 C -0.043 4.043 15 N -0.346 5.346 16 C 0.370 3.630 17 O -0.444 6.444 18 C -0.420 4.420 19 S 0.638 5.362 20 C -0.348 4.348 21 C -0.179 4.179 22 C 0.040 3.960 23 N -0.027 5.027 24 C -0.185 4.185 25 C -0.214 4.214 26 N -0.184 5.184 27 N -0.066 5.066 28 C 0.001 3.999 29 H 0.050 0.950 30 H 0.188 0.812 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.142 0.858 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.244 0.756 38 H 0.196 0.804 39 H 0.256 0.744 40 H 0.243 0.757 41 H 0.074 0.926 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.518 -31.956 -0.829 31.971 hybrid contribution -2.727 -1.334 1.008 3.199 sum -3.246 -33.290 0.179 33.449 Atomic orbital electron populations 1.71002 1.07407 1.27674 1.56422 1.27336 0.97050 1.05076 1.00554 0.82617 0.73347 0.71287 0.77342 1.22173 1.20422 1.19665 1.20428 0.92562 0.87027 1.46539 0.90949 1.42673 1.04759 1.02386 1.90793 1.20718 0.93214 0.83234 0.98600 1.22453 0.97267 0.96445 0.95476 0.90038 1.22660 0.97164 0.90431 1.03936 1.22584 0.91470 0.94146 0.96081 1.48434 1.27757 1.09071 1.49360 1.16989 0.80068 0.87163 0.78809 1.90950 1.50647 1.57060 1.45731 1.24620 1.08551 0.98335 1.10539 1.83114 1.28585 0.88903 1.35585 1.26035 0.99599 1.08458 1.00681 1.19764 1.04767 0.89456 1.03924 1.17349 0.93774 0.91735 0.93145 1.44368 1.06800 1.26237 1.25262 1.24625 0.83049 1.06413 1.04425 1.24331 1.00490 0.97756 0.98867 1.75062 0.97820 1.22550 1.22926 1.78555 1.22523 1.03149 1.02364 1.22041 0.97684 0.81696 0.98436 0.94951 0.81155 0.94204 0.95849 0.85794 0.88707 0.87995 0.88302 0.75571 0.80431 0.74425 0.75723 0.92636 0.94462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.73 13.70 21.65 0.30 -64.43 16 2 C -0.11 -6.64 5.50 84.86 0.47 -6.18 16 3 Si 1.13 53.82 29.92 68.60 2.05 55.87 16 4 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.33 -19.44 9.99 84.03 0.84 -18.60 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.76 -39.89 5.45 -343.46 -1.87 -41.76 16 10 C 0.17 6.52 5.71 86.38 0.49 7.01 16 11 C -0.10 -2.91 3.10 -9.40 -0.03 -2.94 16 12 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 13 C -0.10 -1.81 6.42 31.78 0.20 -1.61 16 14 C 0.08 1.34 5.18 86.73 0.45 1.79 16 15 N -0.61 -18.14 3.33 -817.01 -2.72 -20.86 16 16 C 0.58 19.91 7.77 86.31 0.67 20.58 16 17 O -0.56 -26.03 14.41 -4.48 -0.06 -26.10 16 18 C -0.30 -7.00 6.38 24.13 0.15 -6.84 16 19 S 0.37 3.24 18.45 -56.49 -1.04 2.19 16 20 C -0.21 -1.00 10.90 66.76 0.73 -0.28 16 21 C -0.15 -1.63 9.96 21.18 0.21 -1.42 16 22 C 0.15 3.32 6.21 37.59 0.23 3.56 16 23 N -0.24 -6.84 3.05 -188.91 -0.58 -7.41 16 24 C -0.04 -0.78 11.45 83.36 0.95 0.18 16 25 C -0.06 -1.48 12.05 83.73 1.01 -0.47 16 26 N -0.32 -11.75 12.39 -58.24 -0.72 -12.47 16 27 N -0.09 -3.39 10.77 37.02 0.40 -2.99 16 28 C 0.12 4.52 6.08 86.86 0.53 5.05 16 29 H 0.24 16.07 6.77 -92.71 -0.63 15.44 16 30 H 0.36 19.94 6.37 -92.71 -0.59 19.35 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.02 0.92 8.10 -2.39 -0.02 0.90 16 33 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.52 8.04 -2.39 -0.02 1.50 16 35 H 0.10 1.20 7.20 -2.39 -0.02 1.19 16 36 H 0.10 1.13 6.60 -2.52 -0.02 1.11 16 37 H 0.23 -0.93 8.06 -2.91 -0.02 -0.95 16 38 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.24 2.18 8.06 -2.91 -0.02 2.15 16 40 H 0.23 3.52 8.06 -2.91 -0.02 3.49 16 41 H 0.06 2.20 8.00 -2.39 -0.02 2.18 16 42 H 0.04 1.66 8.04 -2.38 -0.02 1.64 16 Total: -1.00 -99.55 363.12 3.28 -96.27 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.62 Total: 21.85 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 6.91 Total: -0.17 kcal Atomic # 7 Polarization: -144.72 SS G_CDS: -5.19 Total: -149.92 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.06 Total: -26.10 kcal Atomic # 14 Polarization: 53.82 SS G_CDS: 2.05 Total: 55.87 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.04 Total: 2.19 kcal Total: -99.55 3.28 -96.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752940159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.261 kcal (2) G-P(sol) polarization free energy of solvation -99.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds