Wall clock time and date at job start Wed Apr 1 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47441 * 318.03814 * 3 2 1 5 5 N 1.46500 * 109.47662 * 184.80781 * 4 3 2 6 6 C 1.46495 * 120.00187 * 265.42801 * 5 4 3 7 7 C 1.50702 * 109.47137 * 264.35840 * 6 5 4 8 8 H 1.08004 * 119.99496 * 5.15606 * 7 6 5 9 9 C 1.37876 * 120.00224 * 185.16444 * 7 6 5 10 10 N 1.31513 * 120.00246 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99974 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46904 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47080 * 119.99983 * 11 9 7 14 14 H 1.48496 * 109.46931 * 239.99874 * 11 9 7 15 15 C 1.34773 * 119.99983 * 85.41453 * 5 4 3 16 16 O 1.21284 * 119.99750 * 5.13509 * 15 5 4 17 17 C 1.50698 * 119.99981 * 185.12397 * 15 5 4 18 18 H 1.08994 * 109.33318 * 18.26820 * 17 15 5 19 19 C 1.53071 * 109.39949 * 138.05690 * 17 15 5 20 20 C 1.53342 * 108.41515 * 169.04701 * 19 17 15 21 21 C 1.52924 * 108.68507 * 292.46324 * 20 19 17 22 22 H 1.09004 * 109.29766 * 290.42867 * 21 20 19 23 23 C 1.52997 * 109.13553 * 170.94401 * 21 20 19 24 24 F 1.39898 * 109.46963 * 299.07005 * 23 21 20 25 25 F 1.39902 * 109.47322 * 59.06607 * 23 21 20 26 26 F 1.39903 * 109.47214 * 179.06552 * 23 21 20 27 27 N 1.45749 * 110.48350 * 50.73671 * 21 20 19 28 28 C 1.33350 * 124.11098 * 340.94962 * 27 21 20 29 29 O 1.21288 * 118.24976 * 182.20353 * 28 27 21 30 30 H 1.09001 * 109.47296 * 198.03994 * 3 2 1 31 31 H 1.09004 * 109.47023 * 78.04242 * 3 2 1 32 32 H 1.09005 * 109.47101 * 64.80682 * 4 3 2 33 33 H 1.08998 * 109.47191 * 304.80827 * 4 3 2 34 34 H 1.09005 * 109.47510 * 24.35581 * 6 5 4 35 35 H 1.09000 * 109.47903 * 144.35275 * 6 5 4 36 36 H 0.96998 * 120.00061 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.66938 * 288.76098 * 19 17 15 38 38 H 1.09002 * 109.67736 * 49.29267 * 19 17 15 39 39 H 1.09007 * 109.61449 * 172.69911 * 20 19 17 40 40 H 1.08998 * 109.72136 * 52.29310 * 20 19 17 41 41 H 0.97011 * 117.94401 * 160.92872 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.0717 0.9645 5 7 4.5790 -0.9949 1.0517 6 6 5.4096 -1.8498 0.2001 7 6 5.8025 -3.0887 0.9629 8 1 5.4000 -3.2658 1.9493 9 6 6.6760 -3.9959 0.4016 10 7 7.1659 -3.7804 -0.7997 11 14 7.1636 -5.5312 1.3476 12 1 6.4800 -5.5382 2.6659 13 1 6.7645 -6.7356 0.5760 14 1 8.6342 -5.5398 1.5530 15 6 5.1583 -0.1375 1.9151 16 8 4.4739 0.5026 2.6851 17 6 6.6564 0.0256 1.9241 18 1 7.0665 -0.3555 0.9889 19 6 7.0054 1.5093 2.0651 20 6 8.5079 1.6288 2.3475 21 6 8.7937 1.0478 3.7329 22 1 8.3692 1.7036 4.4931 23 6 10.3073 0.9532 3.9346 24 9 10.8546 0.1046 2.9663 25 9 10.8745 2.2263 3.8132 26 9 10.5770 0.4421 5.2087 27 7 8.2067 -0.2802 3.8601 28 6 7.2355 -0.7469 3.0744 29 8 6.7966 -1.8547 3.3006 30 1 2.9710 0.9780 0.3182 31 1 2.9715 -0.2121 -1.0054 32 1 2.8277 -2.0568 0.5995 33 1 2.6866 -0.9078 1.9517 34 1 4.8466 -2.1339 -0.6890 35 1 6.3065 -1.3059 -0.0964 36 1 7.7801 -4.4189 -1.1946 37 1 6.7634 2.0327 1.1401 38 1 6.4409 1.9424 2.8908 39 1 8.8025 2.6780 2.3231 40 1 9.0688 1.0739 1.5955 41 1 8.5439 -0.8611 4.5600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906378708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:33 Heat of formation + Delta-G solvation = -195.961658 kcal Electronic energy + Delta-G solvation = -32016.037330 eV Core-core repulsion = 27095.170085 eV Total energy + Delta-G solvation = -4920.867245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.33306 -47.86101 -47.76268 -40.71948 -38.82322 -36.72157 -36.60516 -35.28888 -33.40555 -32.69559 -31.25494 -30.43057 -27.22816 -27.10021 -24.19615 -23.34244 -23.04830 -22.61855 -19.86798 -18.99164 -18.56709 -18.39122 -18.11646 -17.54853 -17.00433 -16.63730 -16.47370 -15.86849 -15.36760 -14.86145 -14.75256 -14.69097 -14.49021 -14.28977 -14.23362 -14.10043 -14.00131 -13.95019 -13.87925 -13.74337 -13.45684 -13.00322 -12.70366 -12.51200 -12.32958 -12.21608 -11.98995 -11.83247 -11.62045 -11.52262 -11.44375 -10.98492 -10.93712 -10.80303 -10.53956 -10.06849 -9.76465 -9.42165 -9.26263 -9.22630 -8.49060 -7.95566 -6.12647 -4.13923 2.34018 2.71375 2.79011 2.90297 2.96263 3.22134 3.30077 3.38664 3.44503 3.49258 3.63287 3.71973 4.02914 4.27959 4.40341 4.44817 4.59672 4.66477 4.75701 4.97935 5.15118 5.23457 5.27697 5.34697 5.36190 5.54457 5.59330 5.59783 5.78744 5.98780 6.08905 6.20979 6.53664 6.72560 7.02596 7.21827 7.35458 7.66242 7.88214 8.06112 8.06620 8.41700 8.67885 8.99639 9.53450 10.95073 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009313 B = 0.004411 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.789396 B = 6346.173397 C = 8530.257592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.221 3.779 3 C -0.045 4.045 4 C 0.125 3.875 5 N -0.585 5.585 6 C 0.232 3.768 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.064 3.936 10 N -0.901 5.901 11 Si 0.895 3.105 12 H -0.270 1.270 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.544 3.456 16 O -0.564 6.564 17 C -0.126 4.126 18 H 0.141 0.859 19 C -0.106 4.106 20 C -0.137 4.137 21 C 0.109 3.891 22 H 0.118 0.882 23 C 0.439 3.561 24 F -0.172 7.172 25 F -0.177 7.177 26 F -0.182 7.182 27 N -0.723 5.723 28 C 0.539 3.461 29 O -0.482 6.482 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.481 13.418 4.316 15.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.097 4.097 3 C -0.086 4.086 4 C 0.000 4.000 5 N -0.314 5.314 6 C 0.113 3.887 7 C -0.551 4.551 8 H 0.091 0.909 9 C -0.138 4.138 10 N -0.541 5.541 11 Si 0.723 3.277 12 H -0.195 1.195 13 H -0.214 1.214 14 H -0.212 1.212 15 C 0.330 3.670 16 O -0.444 6.444 17 C -0.149 4.149 18 H 0.158 0.842 19 C -0.143 4.143 20 C -0.174 4.174 21 C 0.000 4.000 22 H 0.135 0.865 23 C 0.384 3.616 24 F -0.154 7.154 25 F -0.159 7.159 26 F -0.164 7.164 27 N -0.380 5.380 28 C 0.324 3.676 29 O -0.352 6.352 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.205 13.132 4.491 14.502 hybrid contribution 1.615 -1.228 0.675 2.138 sum 5.820 11.905 5.166 14.223 Atomic orbital electron populations 1.81186 1.13075 1.09107 1.09266 1.29086 0.95110 0.92829 0.92716 1.19784 0.81416 1.03471 1.03941 1.21149 0.81540 0.98051 0.99286 1.48147 1.05674 1.38075 1.39488 1.19648 0.89989 0.89306 0.89727 1.21562 1.26458 1.04226 1.02882 0.90901 1.24838 0.95761 0.98385 0.94788 1.69916 1.32390 1.36819 1.14993 0.86465 0.78291 0.82556 0.80379 1.19459 1.21363 1.21221 1.19531 0.88388 0.79135 0.79934 1.90625 1.64788 1.48709 1.40249 1.21450 0.95595 0.96755 1.01137 0.84202 1.21557 0.93977 0.94217 1.04595 1.22022 0.98869 1.02995 0.93559 1.22089 0.86301 0.88469 1.03105 0.86487 1.21045 0.92486 0.73935 0.74132 1.93240 1.87810 1.71199 1.63116 1.93192 1.87079 1.39930 1.95690 1.93197 1.95209 1.87267 1.40679 1.45394 1.40189 1.15324 1.37106 1.19401 0.78979 0.86692 0.82551 1.90944 1.57310 1.18809 1.68130 0.87343 0.86957 0.88996 0.90083 0.94229 0.94261 0.92875 0.89345 0.89364 0.88102 0.89043 0.75902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.19 18.54 42.16 0.78 -6.41 16 2 C 0.22 2.99 15.43 -20.76 -0.32 2.67 16 3 C -0.04 -0.52 6.00 -29.52 -0.18 -0.70 16 4 C 0.13 1.90 5.33 -4.04 -0.02 1.88 16 5 N -0.58 -10.41 2.48 -175.06 -0.43 -10.84 16 6 C 0.23 4.82 4.92 -5.20 -0.03 4.79 16 7 C -0.51 -12.73 7.75 -34.44 -0.27 -12.99 16 8 H 0.07 1.97 7.00 -52.48 -0.37 1.60 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.90 -23.92 13.29 55.43 0.74 -23.18 16 11 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 C 0.54 9.63 6.03 -10.99 -0.07 9.56 16 16 O -0.56 -10.76 15.85 5.55 0.09 -10.67 16 17 C -0.13 -1.95 2.34 -93.14 -0.22 -2.16 16 18 H 0.14 2.28 5.58 -51.93 -0.29 1.99 16 19 C -0.11 -1.13 5.23 -26.52 -0.14 -1.27 16 20 C -0.14 -1.19 5.02 -26.59 -0.13 -1.32 16 21 C 0.11 1.04 3.06 -68.38 -0.21 0.83 16 22 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 23 C 0.44 4.41 2.79 37.16 0.10 4.51 16 24 F -0.17 -2.10 16.58 2.25 0.04 -2.07 16 25 F -0.18 -1.64 16.91 2.25 0.04 -1.60 16 26 F -0.18 -1.93 16.87 2.25 0.04 -1.89 16 27 N -0.72 -9.54 5.04 -54.85 -0.28 -9.82 16 28 C 0.54 9.31 7.28 -11.87 -0.09 9.22 16 29 O -0.48 -10.64 14.70 5.55 0.08 -10.55 16 30 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 1.39 8.04 -51.93 -0.42 0.97 16 33 H 0.08 1.31 7.49 -51.93 -0.39 0.92 16 34 H 0.04 0.83 8.03 -51.93 -0.42 0.42 16 35 H 0.04 0.83 5.85 -51.93 -0.30 0.53 16 36 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.98 7.52 -51.93 -0.39 0.59 16 39 H 0.10 0.59 8.03 -51.93 -0.42 0.18 16 40 H 0.09 0.86 7.56 -51.93 -0.39 0.47 16 41 H 0.40 5.16 8.27 -40.82 -0.34 4.82 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -31.92 362.02 -4.68 -36.60 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -4.55 Total: 2.01 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: -1.66 Total: 16.57 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.81 Total: -50.25 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.17 Total: -21.22 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.11 Total: -5.55 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.92 -4.68 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906378708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.360 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds