Wall clock time and date at job start Wed Apr 1 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38163 * 120.03119 * 2 1 4 4 C 1.38241 * 120.05608 * 180.25724 * 3 2 1 5 5 C 1.38291 * 120.11181 * 359.45014 * 4 3 2 6 6 N 1.48001 * 119.97169 * 180.29698 * 5 4 3 7 7 O 1.21801 * 120.00013 * 0.02562 * 6 5 4 8 8 O 1.21800 * 119.99624 * 179.97438 * 6 5 4 9 9 C 1.38122 * 120.05199 * 0.27865 * 5 4 3 10 10 C 1.38710 * 120.02492 * 179.71270 * 2 1 3 11 11 O 1.35905 * 120.05736 * 0.03613 * 10 2 1 12 12 C 1.42901 * 117.00028 * 179.97438 * 11 10 2 13 13 C 1.50704 * 109.46998 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99728 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99656 * 179.97438 * 13 12 11 16 16 C 1.46501 * 119.99373 * 179.97438 * 15 13 12 17 17 C 1.50707 * 109.47003 * 90.00673 * 16 15 13 18 18 H 1.08003 * 119.99547 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00081 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00127 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00066 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47194 * 59.99497 * 21 19 17 23 23 H 1.48501 * 109.47225 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47031 * 299.99563 * 21 19 17 25 25 C 1.46491 * 120.00426 * 0.02562 * 15 13 12 26 26 C 1.53000 * 109.47621 * 89.99576 * 25 15 13 27 27 C 1.47204 * 109.47319 * 180.02562 * 26 25 15 28 28 N 8.37899 * 126.13256 * 167.41805 * 2 1 3 29 29 H 1.09007 * 109.46949 * 270.29333 * 1 2 3 30 30 H 1.09005 * 109.46971 * 30.28888 * 1 2 3 31 31 H 1.08993 * 109.47512 * 150.29207 * 1 2 3 32 32 H 1.08001 * 119.97128 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.94763 * 179.73109 * 4 3 2 34 34 H 1.08007 * 120.02829 * 179.97438 * 9 5 4 35 35 H 1.08993 * 109.47358 * 300.00088 * 12 11 10 36 36 H 1.08996 * 109.46721 * 60.00327 * 12 11 10 37 37 H 1.09005 * 109.47046 * 209.99587 * 16 15 13 38 38 H 1.08999 * 109.47860 * 330.00495 * 16 15 13 39 39 H 0.96997 * 120.00148 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.47337 * 209.99760 * 25 15 13 41 41 H 1.09006 * 109.46723 * 329.99410 * 25 15 13 42 42 H 1.09000 * 109.46915 * 300.00442 * 26 25 15 43 43 H 1.09001 * 109.46767 * 60.00287 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 -0.0054 5 6 4.2752 0.0008 0.0007 6 7 5.7552 0.0051 0.0016 7 8 6.3612 1.0617 -0.0026 8 8 6.3672 -1.0479 0.0074 9 6 3.5886 -1.1976 0.0064 10 6 2.2011 -1.2010 0.0060 11 8 1.5233 -2.3789 0.0112 12 6 2.3033 -3.5762 0.0167 13 6 1.3869 -4.7727 0.0225 14 8 0.1843 -4.6154 0.0216 15 7 1.9039 -6.0173 0.0278 16 6 1.0130 -7.1803 0.0340 17 6 0.7063 -7.5858 -1.3847 18 1 1.1321 -7.0321 -2.2085 19 6 -0.1186 -8.6627 -1.6309 20 7 -0.6374 -9.3365 -0.6277 21 14 -0.4993 -9.1648 -3.3894 22 1 0.7634 -9.5126 -4.0894 23 1 -1.4022 -10.3438 -3.3831 24 1 -1.1614 -8.0375 -4.0938 25 6 3.3564 -6.2072 0.0283 26 6 3.8625 -6.2671 1.4710 27 6 5.3222 -6.4573 1.4715 28 7 6.4477 -6.6048 1.4742 29 1 -0.3633 0.0053 1.0277 30 1 -0.3633 0.8874 -0.5183 31 1 -0.3634 -0.8925 -0.5092 32 1 1.6585 2.1315 0.0004 33 1 4.1196 2.1328 -0.0098 34 1 4.1313 -2.1315 0.0107 35 1 2.9323 -3.6042 -0.8730 36 1 2.9319 -3.5962 0.9069 37 1 1.4992 -8.0076 0.5511 38 1 0.0860 -6.9253 0.5475 39 1 -1.2175 -10.0944 -0.8009 40 1 3.6013 -7.1390 -0.4815 41 1 3.8320 -5.3740 -0.4893 42 1 3.6177 -5.3353 1.9808 43 1 3.3870 -7.1003 1.9885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042180428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:45 Heat of formation + Delta-G solvation = -19.802336 kcal Electronic energy + Delta-G solvation = -29790.985376 eV Core-core repulsion = 25419.613713 eV Total energy + Delta-G solvation = -4371.371663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.42030 -40.90492 -39.46118 -37.83692 -36.92145 -36.76296 -35.40799 -33.78560 -33.01300 -31.04964 -30.98976 -29.32869 -28.81920 -26.90548 -25.27610 -24.21555 -23.60908 -22.47749 -22.10210 -19.98394 -19.15714 -18.71484 -17.81505 -17.74475 -17.46079 -16.85688 -16.62808 -16.42470 -16.24517 -15.93596 -15.52235 -14.83234 -14.62952 -14.56696 -14.37417 -13.93658 -13.67241 -13.32006 -12.97171 -12.90041 -12.70287 -12.55666 -12.46732 -12.31358 -12.09962 -12.07008 -11.89867 -11.74131 -11.56004 -11.39124 -11.34625 -11.33665 -11.10695 -10.96746 -10.71264 -10.29286 -9.85586 -9.78200 -9.29265 -8.89241 -8.56223 -8.07416 -6.18462 -4.23982 -0.47971 0.58184 1.07284 1.13125 2.39358 2.67003 2.77238 2.85904 2.97390 3.24638 3.29796 3.32390 3.55841 3.94907 4.06179 4.07610 4.24217 4.33251 4.35738 4.59653 4.66240 4.76054 4.79969 4.87435 4.95191 5.01134 5.10626 5.17297 5.25553 5.30378 5.34397 5.39594 5.60322 5.67515 5.79866 5.91383 5.97085 6.12816 6.61946 6.83038 7.15852 7.25790 7.40946 7.52609 7.76412 7.98081 8.04555 8.58711 8.80640 9.42073 10.89686 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010238 B = 0.003012 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.373204 B = 9293.143222 C =11085.145347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.057 4.057 3 C -0.085 4.085 4 C -0.089 4.089 5 C -0.013 4.013 6 N 0.028 4.972 7 O -0.160 6.160 8 O -0.159 6.159 9 C -0.152 4.152 10 C 0.139 3.861 11 O -0.270 6.270 12 C 0.029 3.971 13 C 0.512 3.488 14 O -0.507 6.507 15 N -0.590 5.590 16 C 0.247 3.753 17 C -0.534 4.534 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 C 0.111 3.889 26 C -0.051 4.051 27 C 0.212 3.788 28 N -0.436 5.436 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.040 0.960 38 H 0.049 0.951 39 H 0.266 0.734 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.277 18.936 3.692 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.058 4.058 3 C -0.103 4.103 4 C -0.109 4.109 5 C -0.095 4.095 6 N 0.548 4.452 7 O -0.376 6.376 8 O -0.375 6.375 9 C -0.172 4.172 10 C 0.091 3.909 11 O -0.181 6.181 12 C -0.050 4.050 13 C 0.296 3.704 14 O -0.381 6.381 15 N -0.323 5.323 16 C 0.129 3.871 17 C -0.573 4.573 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.531 5.531 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.015 4.015 26 C -0.092 4.092 27 C -0.106 4.106 28 N -0.113 5.113 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.172 0.828 33 H 0.172 0.828 34 H 0.176 0.824 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.219 18.554 3.739 19.634 hybrid contribution 0.195 -0.462 -0.965 1.088 sum 5.414 18.093 2.774 19.088 Atomic orbital electron populations 1.20844 0.88572 1.04385 1.03700 1.19831 0.98142 0.89858 0.97977 1.20941 0.92231 0.98065 0.99093 1.20953 0.94644 0.97023 0.98235 1.20750 0.79144 0.96316 1.13332 1.43619 1.03613 1.00479 0.97521 1.94529 1.69287 1.20437 1.53317 1.94570 1.68817 1.20845 1.53239 1.21048 0.93663 0.98653 1.03792 1.18641 0.88709 0.87137 0.96436 1.86267 1.33505 1.10895 1.87399 1.22967 0.94728 0.83659 1.03630 1.19557 0.88641 0.83412 0.78784 1.90755 1.14718 1.84922 1.47676 1.48163 1.05906 1.06644 1.71589 1.19434 0.89345 0.80383 0.97950 1.21351 1.30087 1.13752 0.92119 0.92322 1.24904 0.95331 0.96097 0.97482 1.69901 1.32283 1.20111 1.30761 0.86559 0.78354 0.78058 0.84493 1.20167 1.21122 1.20127 1.21418 0.81900 1.04720 0.93437 1.19870 0.82166 1.05968 1.01204 1.28965 0.94946 0.93238 0.93489 1.81202 1.12967 1.08949 1.08179 0.89857 0.90686 0.89393 0.82800 0.82846 0.82447 0.88828 0.89077 0.94230 0.93329 0.92469 0.88018 0.90747 0.87802 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.79 36.01 0.35 -0.56 16 2 C -0.06 -0.49 5.89 -104.47 -0.62 -1.11 16 3 C -0.08 -0.56 9.70 -39.61 -0.38 -0.94 16 4 C -0.09 -0.71 9.55 -39.56 -0.38 -1.09 16 5 C -0.01 -0.13 6.85 -79.98 -0.55 -0.68 16 6 N 0.03 0.36 4.45 33.95 0.15 0.51 16 7 O -0.16 -2.05 18.45 -29.46 -0.54 -2.60 16 8 O -0.16 -2.18 18.45 -29.46 -0.54 -2.72 16 9 C -0.15 -1.54 8.54 -39.43 -0.34 -1.87 16 10 C 0.14 1.45 6.66 -39.22 -0.26 1.19 16 11 O -0.27 -3.45 8.71 -39.35 -0.34 -3.80 16 12 C 0.03 0.34 3.77 36.01 0.14 0.47 16 13 C 0.51 8.68 7.75 -10.98 -0.09 8.59 16 14 O -0.51 -11.15 16.08 -14.36 -0.23 -11.38 16 15 N -0.59 -9.84 2.46 -175.06 -0.43 -10.27 16 16 C 0.25 5.48 5.16 -5.19 -0.03 5.46 16 17 C -0.53 -13.63 9.39 -34.44 -0.32 -13.95 16 18 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 21 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 C 0.11 1.32 5.17 -4.05 -0.02 1.30 16 26 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 27 C 0.21 2.43 15.43 -20.79 -0.32 2.11 16 28 N -0.44 -6.30 18.53 42.12 0.78 -5.52 16 29 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.09 0.87 7.53 -51.93 -0.39 0.48 16 32 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 33 H 0.15 0.96 7.61 -52.49 -0.40 0.57 16 34 H 0.16 1.45 5.85 -52.48 -0.31 1.14 16 35 H 0.09 0.92 6.92 -51.93 -0.36 0.56 16 36 H 0.09 0.78 6.71 -51.93 -0.35 0.43 16 37 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 38 H 0.05 1.24 7.42 -51.93 -0.39 0.86 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 41 H 0.07 0.70 6.44 -51.93 -0.33 0.36 16 42 H 0.10 0.75 7.22 -51.93 -0.38 0.37 16 43 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 386.81 15.07 5.83 5.83 Total: -1.00 -33.79 386.81 -7.67 -41.46 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -4.97 Total: -3.10 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -3.09 Total: -0.10 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 1.24 Total: -39.15 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -1.66 Total: -20.50 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.79 -7.67 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042180428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.660 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds