Wall clock time and date at job start Wed Apr 1 2020 04:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38163 * 120.03119 * 2 1 4 4 C 1.38241 * 120.05608 * 180.25724 * 3 2 1 5 5 C 1.38291 * 120.11181 * 359.45014 * 4 3 2 6 6 N 1.48001 * 119.97169 * 180.29698 * 5 4 3 7 7 O 1.21801 * 120.00013 * 0.02562 * 6 5 4 8 8 O 1.21800 * 119.99624 * 179.97438 * 6 5 4 9 9 C 1.38122 * 120.05199 * 0.27865 * 5 4 3 10 10 C 1.38710 * 120.02492 * 179.71270 * 2 1 3 11 11 O 1.35905 * 120.05736 * 0.03613 * 10 2 1 12 12 C 1.42901 * 117.00028 * 179.97438 * 11 10 2 13 13 C 1.50704 * 109.46998 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99728 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99656 * 179.97438 * 13 12 11 16 16 C 1.46501 * 119.99373 * 179.97438 * 15 13 12 17 17 C 1.50707 * 109.47003 * 90.00673 * 16 15 13 18 18 H 1.08003 * 119.99547 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00081 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00127 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00066 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47194 * 59.99497 * 21 19 17 23 23 H 1.48501 * 109.47225 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47031 * 299.99563 * 21 19 17 25 25 C 1.46491 * 120.00426 * 0.02562 * 15 13 12 26 26 C 1.53000 * 109.47621 * 89.99576 * 25 15 13 27 27 C 1.47204 * 109.47319 * 180.02562 * 26 25 15 28 28 N 8.37899 * 126.13256 * 167.41805 * 2 1 3 29 29 H 1.09007 * 109.46949 * 270.29333 * 1 2 3 30 30 H 1.09005 * 109.46971 * 30.28888 * 1 2 3 31 31 H 1.08993 * 109.47512 * 150.29207 * 1 2 3 32 32 H 1.08001 * 119.97128 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.94763 * 179.73109 * 4 3 2 34 34 H 1.08007 * 120.02829 * 179.97438 * 9 5 4 35 35 H 1.08993 * 109.47358 * 300.00088 * 12 11 10 36 36 H 1.08996 * 109.46721 * 60.00327 * 12 11 10 37 37 H 1.09005 * 109.47046 * 209.99587 * 16 15 13 38 38 H 1.08999 * 109.47860 * 330.00495 * 16 15 13 39 39 H 0.96997 * 120.00148 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.47337 * 209.99760 * 25 15 13 41 41 H 1.09006 * 109.46723 * 329.99410 * 25 15 13 42 42 H 1.09000 * 109.46915 * 300.00442 * 26 25 15 43 43 H 1.09001 * 109.46767 * 60.00287 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 -0.0054 5 6 4.2752 0.0008 0.0007 6 7 5.7552 0.0051 0.0016 7 8 6.3612 1.0617 -0.0026 8 8 6.3672 -1.0479 0.0074 9 6 3.5886 -1.1976 0.0064 10 6 2.2011 -1.2010 0.0060 11 8 1.5233 -2.3789 0.0112 12 6 2.3033 -3.5762 0.0167 13 6 1.3869 -4.7727 0.0225 14 8 0.1843 -4.6154 0.0216 15 7 1.9039 -6.0173 0.0278 16 6 1.0130 -7.1803 0.0340 17 6 0.7063 -7.5858 -1.3847 18 1 1.1321 -7.0321 -2.2085 19 6 -0.1186 -8.6627 -1.6309 20 7 -0.6374 -9.3365 -0.6277 21 14 -0.4993 -9.1648 -3.3894 22 1 0.7634 -9.5126 -4.0894 23 1 -1.4022 -10.3438 -3.3831 24 1 -1.1614 -8.0375 -4.0938 25 6 3.3564 -6.2072 0.0283 26 6 3.8625 -6.2671 1.4710 27 6 5.3222 -6.4573 1.4715 28 7 6.4477 -6.6048 1.4742 29 1 -0.3633 0.0053 1.0277 30 1 -0.3633 0.8874 -0.5183 31 1 -0.3634 -0.8925 -0.5092 32 1 1.6585 2.1315 0.0004 33 1 4.1196 2.1328 -0.0098 34 1 4.1313 -2.1315 0.0107 35 1 2.9323 -3.6042 -0.8730 36 1 2.9319 -3.5962 0.9069 37 1 1.4992 -8.0076 0.5511 38 1 0.0860 -6.9253 0.5475 39 1 -1.2175 -10.0944 -0.8009 40 1 3.6013 -7.1390 -0.4815 41 1 3.8320 -5.3740 -0.4893 42 1 3.6177 -5.3353 1.9808 43 1 3.3870 -7.1003 1.9885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042180428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:44 Heat of formation + Delta-G solvation = -38.513640 kcal Electronic energy + Delta-G solvation = -29791.796759 eV Core-core repulsion = 25419.613713 eV Total energy + Delta-G solvation = -4372.183046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.29455 -41.76268 -40.65754 -38.70284 -38.00035 -37.69474 -36.74610 -34.90524 -34.45093 -32.24598 -31.76536 -30.52548 -29.57659 -28.44099 -26.06053 -25.38152 -24.91442 -23.56671 -22.85985 -20.82011 -20.31806 -19.71896 -18.90779 -18.63731 -18.43360 -18.33899 -17.86991 -17.42270 -17.08597 -16.97419 -16.62107 -16.15472 -15.77401 -15.66373 -15.16137 -14.88837 -14.73441 -14.46204 -14.12505 -13.94656 -13.61818 -13.57244 -13.50774 -13.35038 -13.22988 -12.98327 -12.93439 -12.82428 -12.74448 -12.56992 -12.52250 -12.45511 -12.32397 -12.21347 -12.17513 -11.88230 -11.71040 -10.70971 -10.58884 -10.40452 -9.64065 -9.58184 -8.19362 -6.31326 -1.31033 -0.05930 0.25153 0.32149 1.39663 1.42115 1.43967 1.50393 1.58543 1.82655 1.84763 2.19972 2.37769 2.49893 3.04523 3.13632 3.33201 3.37037 3.54863 3.57669 3.74197 3.83048 3.93587 4.06002 4.07526 4.09426 4.28267 4.47486 4.50832 4.66189 4.76659 4.78524 4.79438 5.00649 5.02749 5.06027 5.14312 5.26039 5.31049 5.40786 5.54477 5.80839 5.96874 6.09979 6.44752 6.57393 6.62649 6.77828 7.24885 7.41465 8.87406 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010238 B = 0.003012 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.373204 B = 9293.143222 C =11085.145347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.057 4.057 3 C -0.068 4.068 4 C -0.079 4.079 5 C -0.031 4.031 6 N 0.031 4.969 7 O -0.162 6.162 8 O -0.195 6.195 9 C -0.154 4.154 10 C 0.120 3.880 11 O -0.295 6.295 12 C 0.038 3.962 13 C 0.507 3.493 14 O -0.568 6.568 15 N -0.589 5.589 16 C 0.261 3.739 17 C -0.544 4.544 18 H 0.055 0.945 19 C 0.014 3.986 20 N -0.924 5.924 21 Si 0.955 3.045 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.279 1.279 25 C 0.107 3.893 26 C -0.040 4.040 27 C 0.242 3.758 28 N -0.486 5.486 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.196 0.804 33 H 0.174 0.826 34 H 0.163 0.837 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.041 0.959 38 H 0.008 0.992 39 H 0.266 0.734 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.136 0.864 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.882 21.424 3.344 22.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.058 4.058 3 C -0.086 4.086 4 C -0.098 4.098 5 C -0.114 4.114 6 N 0.546 4.454 7 O -0.380 6.380 8 O -0.404 6.404 9 C -0.174 4.174 10 C 0.074 3.926 11 O -0.207 6.207 12 C -0.040 4.040 13 C 0.294 3.706 14 O -0.447 6.447 15 N -0.321 5.321 16 C 0.141 3.859 17 C -0.583 4.583 18 H 0.073 0.927 19 C -0.186 4.186 20 N -0.564 5.564 21 Si 0.781 3.219 22 H -0.189 1.189 23 H -0.208 1.208 24 H -0.205 1.205 25 C -0.018 4.018 26 C -0.081 4.081 27 C -0.075 4.075 28 N -0.164 5.164 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.213 0.787 33 H 0.191 0.809 34 H 0.181 0.819 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.059 0.941 38 H 0.026 0.974 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.154 0.846 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.910 21.005 3.391 22.083 hybrid contribution -0.082 -1.096 -0.843 1.385 sum 5.828 19.909 2.548 20.900 Atomic orbital electron populations 1.20868 0.88077 1.04363 1.04107 1.20161 0.98693 0.89989 0.96939 1.21354 0.91574 0.98776 0.96897 1.21335 0.95242 0.96901 0.96298 1.20927 0.77627 0.97500 1.15384 1.43917 1.04568 1.00078 0.96881 1.94501 1.70074 1.20407 1.53040 1.94563 1.69709 1.21102 1.55011 1.21065 0.93486 0.99012 1.03792 1.18798 0.88907 0.86834 0.98102 1.86230 1.34520 1.11682 1.88245 1.22892 0.93196 0.81398 1.06477 1.20419 0.88600 0.84581 0.76974 1.90723 1.17667 1.85921 1.50355 1.47979 1.07375 1.05471 1.71252 1.18880 0.88975 0.82264 0.95824 1.21727 1.29613 1.13376 0.93549 0.92672 1.25684 0.95454 0.96435 1.01004 1.70004 1.33156 1.20690 1.32540 0.85648 0.78512 0.77468 0.80282 1.18852 1.20825 1.20479 1.21648 0.78943 1.05743 0.95442 1.19858 0.80562 1.07910 0.99763 1.29098 0.94858 0.91608 0.91950 1.81245 1.14559 1.10817 1.09762 0.89238 0.87806 0.92257 0.78707 0.80878 0.81931 0.86523 0.85350 0.94082 0.97421 0.92514 0.88977 0.87517 0.84649 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.79 71.24 0.70 -0.86 16 2 C -0.06 -0.82 5.89 -19.77 -0.12 -0.94 16 3 C -0.07 -0.61 9.70 22.25 0.22 -0.39 16 4 C -0.08 -0.97 9.55 22.28 0.21 -0.76 16 5 C -0.03 -0.58 6.85 36.36 0.25 -0.33 16 6 N 0.03 0.73 4.45 -46.51 -0.21 0.52 16 7 O -0.16 -3.92 18.45 18.88 0.35 -3.57 16 8 O -0.19 -5.24 18.45 18.89 0.35 -4.89 16 9 C -0.15 -2.79 8.54 22.36 0.19 -2.60 16 10 C 0.12 2.30 6.66 22.51 0.15 2.45 16 11 O -0.29 -7.26 8.71 -73.44 -0.64 -7.90 16 12 C 0.04 0.83 3.77 71.24 0.27 1.10 16 13 C 0.51 17.13 7.75 87.66 0.68 17.81 16 14 O -0.57 -25.95 16.08 16.00 0.26 -25.70 16 15 N -0.59 -19.48 2.46 -826.14 -2.03 -21.51 16 16 C 0.26 11.93 5.16 85.64 0.44 12.37 16 17 C -0.54 -28.25 9.39 25.60 0.24 -28.01 16 18 H 0.06 2.83 7.81 -2.91 -0.02 2.81 16 19 C 0.01 0.74 5.46 84.65 0.46 1.20 16 20 N -0.92 -52.16 13.29 21.45 0.28 -51.88 16 21 Si 0.96 42.50 29.54 68.60 2.03 44.52 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 C 0.11 2.33 5.17 86.38 0.45 2.78 16 26 C -0.04 -0.65 6.03 28.79 0.17 -0.48 16 27 C 0.24 5.12 15.43 89.45 1.38 6.50 16 28 N -0.49 -13.53 18.53 20.00 0.37 -13.16 16 29 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.10 0.74 8.09 -2.38 -0.02 0.72 16 31 H 0.06 1.16 7.53 -2.39 -0.02 1.14 16 32 H 0.20 0.16 8.06 -2.91 -0.02 0.13 16 33 H 0.17 1.47 7.61 -2.91 -0.02 1.44 16 34 H 0.16 2.63 5.85 -2.91 -0.02 2.62 16 35 H 0.12 1.99 6.92 -2.39 -0.02 1.98 16 36 H 0.13 1.78 6.71 -2.39 -0.02 1.77 16 37 H 0.04 1.85 8.07 -2.38 -0.02 1.83 16 38 H 0.01 0.41 7.42 -2.39 -0.02 0.40 16 39 H 0.27 14.30 8.31 -92.71 -0.77 13.52 16 40 H 0.09 2.25 8.07 -2.39 -0.02 2.23 16 41 H 0.11 1.68 6.44 -2.38 -0.02 1.66 16 42 H 0.14 1.45 7.22 -2.39 -0.02 1.43 16 43 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -78.29 386.81 7.52 -70.78 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: 1.07 Total: 2.94 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 5.69 Total: 9.83 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -1.58 Total: -86.02 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: 0.31 Total: -42.05 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -78.29 7.52 -70.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042180428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.262 kcal (2) G-P(sol) polarization free energy of solvation -78.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds