Wall clock time and date at job start Wed Apr 1 2020 04:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46957 * 2 1 4 4 H 1.09002 * 109.47233 * 54.99912 * 3 2 1 5 5 C 1.50698 * 109.47305 * 175.00036 * 3 2 1 6 6 H 1.07999 * 120.00167 * 119.99785 * 5 3 2 7 7 C 1.37880 * 119.99877 * 300.00137 * 5 3 2 8 8 N 1.31512 * 119.99937 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00069 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47093 * 59.99749 * 9 7 5 11 11 H 1.48504 * 109.47253 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47289 * 299.99601 * 9 7 5 13 13 O 1.45204 * 109.47192 * 294.99726 * 3 2 1 14 14 C 1.34742 * 116.99562 * 89.99706 * 13 3 2 15 15 O 1.21492 * 120.00272 * 0.02562 * 14 13 3 16 16 C 1.47520 * 119.99352 * 179.97438 * 14 13 3 17 17 C 1.39932 * 120.45184 * 0.02562 * 16 14 13 18 18 N 1.31568 * 121.34863 * 180.02562 * 17 16 14 19 19 C 1.32435 * 121.75064 * 359.96792 * 18 17 16 20 20 C 1.40910 * 120.30616 * 0.02562 * 19 18 17 21 21 C 1.39031 * 119.69419 * 0.02562 * 20 19 18 22 22 C 1.47331 * 118.48947 * 179.78641 * 20 19 18 23 23 O 1.21589 * 120.92902 * 180.26690 * 22 20 19 24 24 N 1.35137 * 118.14266 * 0.44395 * 22 20 19 25 25 C 1.46499 * 119.47714 * 179.81768 * 24 22 20 26 26 C 1.34219 * 121.04518 * 359.54674 * 24 22 20 27 27 O 1.21567 * 118.50277 * 180.22878 * 26 24 22 28 28 N 1.34312 * 122.99784 * 0.25076 * 26 24 22 29 29 C 1.46495 * 119.56117 * 180.02562 * 28 26 24 30 30 H 1.09003 * 109.46839 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46977 * 299.99912 * 1 2 3 32 32 H 1.08999 * 109.47116 * 60.00215 * 1 2 3 33 33 H 1.08998 * 109.47118 * 239.99594 * 2 1 3 34 34 H 1.08999 * 109.47116 * 119.99784 * 2 1 3 35 35 H 0.97001 * 120.00080 * 179.97438 * 8 7 5 36 36 H 1.08000 * 119.31995 * 359.96902 * 17 16 14 37 37 H 1.08004 * 121.10304 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.47391 * 269.72982 * 25 24 22 39 39 H 1.09001 * 109.46813 * 149.73039 * 25 24 22 40 40 H 1.09004 * 109.47041 * 29.73166 * 25 24 22 41 41 H 1.08998 * 109.47678 * 359.97438 * 29 28 26 42 42 H 1.08999 * 109.47183 * 120.00396 * 29 28 26 43 43 H 1.09005 * 109.46815 * 239.99863 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8802 1.3812 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2169 2.6504 12 1 6.5967 0.1453 0.2344 13 8 1.6559 2.0917 -1.2408 14 6 0.4682 2.7278 -1.2561 15 8 -0.2273 2.7401 -0.2599 16 6 0.0128 3.4102 -2.4821 17 6 0.8065 3.4024 -3.6345 18 7 0.4179 4.0056 -4.7373 19 6 -0.7387 4.6465 -4.8107 20 6 -1.5944 4.6994 -3.6924 21 6 -1.2194 4.0753 -2.5081 22 6 -2.8693 5.4273 -3.8170 23 8 -3.6388 5.5050 -2.8787 24 7 -3.1613 6.0030 -5.0042 25 6 -4.4230 6.7306 -5.1617 26 6 -2.3112 5.9233 -6.0398 27 8 -2.6185 6.4618 -7.0854 28 7 -1.1365 5.2753 -5.9737 29 6 -0.2655 5.2361 -7.1509 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8293 -0.0609 2.9499 36 1 1.7578 2.8914 -3.6180 37 1 -1.8575 4.1019 -1.6371 38 1 -5.1959 6.0463 -5.5118 39 1 -4.2917 7.5326 -5.8881 40 1 -4.7203 7.1543 -4.2023 41 1 -0.7363 5.7803 -7.9696 42 1 0.6919 5.6981 -6.9101 43 1 -0.1042 4.2001 -7.4491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188117246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:54 Heat of formation + Delta-G solvation = -91.463241 kcal Electronic energy + Delta-G solvation = -30428.851680 eV Core-core repulsion = 26054.372567 eV Total energy + Delta-G solvation = -4374.479113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.79660 -40.51268 -39.57197 -39.35226 -36.62837 -35.90700 -35.74338 -33.62245 -33.24518 -31.65975 -31.15061 -28.93328 -27.47032 -27.20511 -25.30796 -24.93271 -23.34423 -22.80110 -21.82108 -20.39854 -19.96982 -19.02505 -18.23022 -17.66021 -17.20936 -16.81050 -16.51002 -16.12777 -15.85081 -15.68153 -15.51449 -15.34833 -14.86198 -14.59920 -14.51288 -14.08059 -13.46476 -13.37775 -13.31026 -13.14558 -12.89445 -12.77847 -12.68030 -12.30694 -11.64789 -11.56451 -11.42520 -11.29141 -11.03012 -10.99855 -10.95654 -10.73711 -10.48823 -10.37691 -10.25063 -10.22187 -9.88283 -9.76696 -9.47541 -8.92079 -8.86918 -8.52111 -6.24976 -4.32831 0.00493 0.37268 1.37297 1.60113 2.25428 2.28481 2.98590 3.19101 3.22399 3.27078 3.32205 3.50492 3.59421 3.75931 4.25193 4.35237 4.49299 4.54518 4.80401 4.88983 4.93464 4.96235 5.00789 5.03984 5.07536 5.25973 5.32575 5.38030 5.62722 5.71183 5.88325 5.99400 6.16537 6.23104 6.38059 6.64244 6.77285 6.87228 6.93058 7.08151 7.11659 7.23737 7.39224 7.52907 7.65008 7.82254 8.06207 8.44550 8.76767 9.32576 10.81662 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020001 B = 0.002543 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.612626 B =11009.914109 C =11877.708862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.224 3.776 4 H 0.050 0.950 5 C -0.524 4.524 6 H 0.070 0.930 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.349 6.349 14 C 0.505 3.495 15 O -0.503 6.503 16 C -0.199 4.199 17 C 0.236 3.764 18 N -0.515 5.515 19 C 0.418 3.582 20 C -0.257 4.257 21 C 0.086 3.914 22 C 0.571 3.429 23 O -0.481 6.481 24 N -0.560 5.560 25 C 0.080 3.920 26 C 0.710 3.290 27 O -0.534 6.534 28 N -0.527 5.527 29 C 0.086 3.914 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.110 0.890 35 H 0.268 0.732 36 H 0.194 0.806 37 H 0.171 0.829 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.833 9.062 -16.444 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.172 3.828 4 H 0.068 0.932 5 C -0.562 4.562 6 H 0.088 0.912 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.265 6.265 14 C 0.347 3.653 15 O -0.394 6.394 16 C -0.204 4.204 17 C 0.076 3.924 18 N -0.230 5.230 19 C 0.185 3.815 20 C -0.266 4.266 21 C 0.061 3.939 22 C 0.362 3.638 23 O -0.353 6.353 24 N -0.305 5.305 25 C -0.060 4.060 26 C 0.413 3.587 27 O -0.407 6.407 28 N -0.251 5.251 29 C -0.055 4.055 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.128 0.872 35 H 0.078 0.922 36 H 0.211 0.789 37 H 0.188 0.812 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.126 9.346 -16.863 21.777 hybrid contribution 0.437 -0.161 0.989 1.094 sum -9.688 9.185 -15.874 20.742 Atomic orbital electron populations 1.21873 0.98345 0.99178 1.00735 1.22039 0.92640 0.99204 1.03553 1.20773 0.95129 0.88765 0.78144 0.93231 1.20972 0.89431 1.39386 1.06414 0.91229 1.24877 0.99269 0.94675 0.95024 1.69871 1.35562 1.37523 1.09452 0.86333 0.83765 0.78519 0.77531 1.19973 1.21040 1.19893 1.86509 1.32990 1.62317 1.44708 1.20318 0.81504 0.77059 0.86393 1.90828 1.55455 1.58391 1.34685 1.20385 0.97441 1.06511 0.96072 1.23487 0.97887 0.86660 0.84343 1.67327 1.13962 1.13005 1.28663 1.18605 0.89813 0.88488 0.84608 1.20013 0.97983 1.12223 0.96361 1.21599 0.92582 0.83986 0.95757 1.18137 0.85947 0.77915 0.81758 1.90871 1.49831 1.57361 1.37220 1.46071 1.21313 1.51483 1.11585 1.21989 0.81798 0.97387 1.04870 1.15372 0.79579 0.79621 0.84170 1.91002 1.74181 1.48172 1.27304 1.44462 1.18524 1.49376 1.12736 1.22045 0.93460 1.04650 0.85297 0.94701 0.92713 0.95032 0.93805 0.87204 0.92225 0.78914 0.81203 0.90526 0.88641 0.88643 0.88023 0.89797 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.56 37.16 0.32 -2.66 16 2 C -0.14 -3.18 5.49 -26.73 -0.15 -3.32 16 3 C 0.22 5.52 2.25 -27.88 -0.06 5.46 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -13.73 8.90 -34.44 -0.31 -14.03 16 6 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -24.01 11.29 55.43 0.63 -23.39 16 9 Si 0.91 20.14 29.54 -169.99 -5.02 15.12 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 O -0.35 -7.35 9.06 -40.61 -0.37 -7.72 16 14 C 0.50 9.50 6.35 34.51 0.22 9.72 16 15 O -0.50 -10.72 13.60 -19.26 -0.26 -10.98 16 16 C -0.20 -2.87 5.89 -104.80 -0.62 -3.49 16 17 C 0.24 2.88 10.76 -17.03 -0.18 2.70 16 18 N -0.51 -5.93 9.62 -11.81 -0.11 -6.04 16 19 C 0.42 4.80 7.38 -155.22 -1.15 3.66 16 20 C -0.26 -3.15 5.88 -104.89 -0.62 -3.77 16 21 C 0.09 1.15 9.30 -38.61 -0.36 0.79 16 22 C 0.57 6.98 7.64 -12.40 -0.09 6.88 16 23 O -0.48 -6.78 16.23 5.29 0.09 -6.70 16 24 N -0.56 -5.93 2.96 -129.58 -0.38 -6.31 16 25 C 0.08 0.62 10.09 59.85 0.60 1.22 16 26 C 0.71 7.78 8.09 -87.83 -0.71 7.07 16 27 O -0.53 -6.44 14.82 5.31 0.08 -6.36 16 28 N -0.53 -5.41 3.04 -128.31 -0.39 -5.79 16 29 C 0.09 0.64 10.04 59.84 0.60 1.24 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 1.19 7.79 -51.93 -0.40 0.79 16 32 H 0.03 0.62 6.06 -51.93 -0.31 0.30 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.11 2.81 5.95 -51.93 -0.31 2.50 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.19 2.13 7.59 -52.49 -0.40 1.73 16 37 H 0.17 2.30 7.53 -52.48 -0.40 1.91 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.66 7.31 -51.93 -0.38 0.28 16 40 H 0.09 0.69 7.42 -51.93 -0.39 0.30 16 41 H 0.10 0.72 6.77 -51.93 -0.35 0.37 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -30.58 363.81 -7.83 -38.40 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.97 Total: 1.22 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: -2.60 Total: 13.06 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.26 Total: -41.54 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.47 Total: -31.76 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.58 -7.83 -38.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188117246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.058 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds