Wall clock time and date at job start Wed Apr 1 2020 04:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00514 * 2 1 4 4 O 1.20828 * 119.99777 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00384 * 179.97438 * 3 2 1 6 6 C 1.50706 * 109.47437 * 179.97438 * 5 3 2 7 7 O 1.33658 * 125.80100 * 270.00241 * 6 5 3 8 8 C 1.34208 * 110.91158 * 179.97438 * 7 6 5 9 9 C 1.34177 * 109.12525 * 359.70601 * 8 7 6 10 10 C 1.36421 * 125.80294 * 89.99361 * 6 5 3 11 11 C 1.47358 * 127.19524 * 0.02562 * 10 6 5 12 12 O 1.21623 * 120.00028 * 359.97438 * 11 10 6 13 13 N 1.34782 * 119.99849 * 179.97438 * 11 10 6 14 14 C 1.40106 * 119.99734 * 179.97438 * 13 11 10 15 15 C 1.40424 * 125.97626 * 0.32285 * 14 13 11 16 16 C 1.35232 * 107.86568 * 180.16557 * 15 14 13 17 17 C 1.50703 * 126.06766 * 179.84878 * 16 15 14 18 18 N 1.34973 * 107.86541 * 359.58490 * 16 15 14 19 19 C 1.46497 * 125.97459 * 180.26213 * 18 16 15 20 20 C 1.50702 * 109.46850 * 90.00344 * 19 18 16 21 21 H 1.07999 * 120.00358 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99781 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99959 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00007 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47040 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47567 * 119.99341 * 24 22 20 27 27 H 1.48501 * 109.46862 * 239.99690 * 24 22 20 28 28 N 1.31229 * 125.97408 * 180.02562 * 14 13 11 29 29 H 1.08998 * 109.47329 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47719 * 300.00781 * 1 2 3 31 31 H 1.09006 * 109.46951 * 60.00523 * 1 2 3 32 32 H 1.08998 * 109.47584 * 59.99294 * 5 3 2 33 33 H 1.09005 * 109.47122 * 299.99656 * 5 3 2 34 34 H 1.07997 * 125.44185 * 179.97438 * 8 7 6 35 35 H 1.08000 * 127.02497 * 180.26867 * 9 8 7 36 36 H 0.96997 * 119.99972 * 359.97438 * 13 11 10 37 37 H 1.08001 * 126.06603 * 0.04464 * 15 14 13 38 38 H 1.09002 * 109.47152 * 269.68932 * 17 16 15 39 39 H 1.09001 * 109.46980 * 149.69032 * 17 16 15 40 40 H 1.09004 * 109.47113 * 29.69013 * 17 16 15 41 41 H 1.09003 * 109.47259 * 209.99978 * 19 18 16 42 42 H 1.08994 * 109.47368 * 330.00252 * 19 18 16 43 43 H 0.97000 * 119.99974 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 3.9937 2.7200 -0.0002 7 8 4.2159 3.4690 -1.0846 8 6 4.5830 4.7132 -0.7404 9 6 4.6040 4.8110 0.5976 10 6 4.2195 3.4860 1.1058 11 6 4.0970 3.0736 2.5152 12 8 3.7608 1.9374 2.7894 13 7 4.3576 3.9556 3.5005 14 6 4.2407 3.5637 4.8405 15 6 3.8695 2.2889 5.2978 16 6 3.8705 2.3166 6.6498 17 6 3.5294 1.1657 7.5610 18 7 4.2368 3.5562 7.0383 19 6 4.3727 4.0195 8.4215 20 6 5.7819 3.7755 8.8967 21 1 6.5038 3.3204 8.2349 22 6 6.1491 4.1323 10.1769 23 7 5.2699 4.6860 10.9830 24 14 7.8960 3.8305 10.7658 25 1 8.6840 3.2010 9.6759 26 1 8.5206 5.1230 11.1458 27 1 7.8719 2.9270 11.9441 28 7 4.4641 4.3222 5.8879 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 3.9564 0.7804 -0.8890 33 1 3.9557 0.7809 0.8909 34 1 4.8193 5.5098 -1.4302 35 1 4.8553 5.6838 1.1820 36 1 4.6261 4.8617 3.2818 37 1 3.6246 1.4380 4.6794 38 1 2.4617 1.1797 7.7800 39 1 4.0921 1.2587 8.4900 40 1 3.7879 0.2263 7.0722 41 1 4.1522 5.0859 8.4708 42 1 3.6753 3.4745 9.0574 43 1 5.5283 4.9373 11.8835 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290437508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:19 Heat of formation + Delta-G solvation = -23.224022 kcal Electronic energy + Delta-G solvation = -29668.308285 eV Core-core repulsion = 25296.788247 eV Total energy + Delta-G solvation = -4371.520038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.93944 -40.69349 -40.58909 -39.12238 -36.77651 -34.92408 -33.56587 -33.27523 -32.60802 -31.37605 -30.81656 -28.85956 -27.30648 -26.63419 -26.33907 -24.27036 -22.80075 -22.06725 -21.50170 -20.32824 -19.71909 -19.11513 -18.05717 -17.88670 -16.92619 -16.77899 -16.69307 -16.19417 -16.12764 -15.77465 -15.38316 -15.00332 -14.83705 -14.28586 -14.14226 -13.96511 -13.78357 -13.63102 -13.19824 -13.03553 -12.95765 -12.49272 -12.33597 -12.31630 -12.17621 -12.09568 -11.67945 -11.42389 -11.08651 -11.05502 -10.86661 -10.82494 -10.44768 -10.26261 -10.09552 -9.99274 -9.66426 -9.52111 -8.99667 -8.65748 -7.94317 -7.45933 -6.26405 -4.34058 0.92898 1.76436 1.95825 2.21811 2.60936 2.70342 2.84906 3.13922 3.19698 3.27710 3.33952 3.80656 3.86706 4.01963 4.29642 4.46656 4.49617 4.58254 4.73203 4.85742 4.95046 5.06363 5.07366 5.16868 5.27405 5.33762 5.50315 5.58196 5.71059 5.92505 5.97338 6.09603 6.09747 6.23199 6.46491 6.53668 6.63808 6.76127 6.92683 7.04743 7.42693 7.45590 7.63491 7.66866 7.88057 8.04576 8.21392 8.64082 8.74729 9.32441 10.80887 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.002395 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.922598 B =11689.633467 C =12809.289806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.472 3.528 4 O -0.498 6.498 5 C -0.041 4.041 6 C 0.080 3.920 7 O -0.168 6.168 8 C -0.024 4.024 9 C -0.188 4.188 10 C -0.211 4.211 11 C 0.597 3.403 12 O -0.520 6.520 13 N -0.620 5.620 14 C 0.264 3.736 15 C -0.288 4.288 16 C 0.092 3.908 17 C -0.088 4.088 18 N -0.316 5.316 19 C 0.258 3.742 20 C -0.535 4.535 21 H 0.065 0.935 22 C 0.065 3.935 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.280 1.280 28 N -0.319 5.319 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.127 0.873 33 H 0.157 0.843 34 H 0.212 0.788 35 H 0.162 0.838 36 H 0.411 0.589 37 H 0.160 0.840 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.060 -6.549 -24.245 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.314 3.686 4 O -0.385 6.385 5 C -0.078 4.078 6 C 0.027 3.973 7 O -0.064 6.064 8 C -0.090 4.090 9 C -0.208 4.208 10 C -0.215 4.215 11 C 0.384 3.616 12 O -0.397 6.397 13 N -0.266 5.266 14 C 0.011 3.989 15 C -0.319 4.319 16 C -0.040 4.040 17 C -0.147 4.147 18 N -0.098 5.098 19 C 0.140 3.860 20 C -0.574 4.574 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.206 1.206 28 N -0.150 5.150 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.174 0.826 34 H 0.229 0.771 35 H 0.180 0.820 36 H 0.246 0.754 37 H 0.177 0.823 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.243 -5.864 -23.634 24.909 hybrid contribution 0.742 0.175 0.219 0.793 sum -4.501 -5.689 -23.416 24.513 Atomic orbital electron populations 1.23301 0.75793 1.03852 1.02742 1.86462 1.23782 1.32731 1.84175 1.23131 0.91172 0.81728 0.72533 1.90717 1.66939 1.36255 1.44578 1.19874 0.89499 0.89260 1.09141 1.21521 0.99491 0.92712 0.83567 1.83731 1.66698 1.21600 1.34364 1.23895 1.03774 0.84911 0.96418 1.22928 1.05884 0.97289 0.94661 1.20977 1.12385 0.95095 0.93087 1.17027 0.76840 0.84498 0.83205 1.90687 1.46630 1.19157 1.83223 1.42149 1.67074 1.15269 1.02140 1.18931 1.02392 0.93627 0.83928 1.21242 1.19346 0.98585 0.92753 1.21067 0.99837 0.88641 0.94442 1.20379 1.01802 0.93762 0.98738 1.49003 1.47859 1.06596 1.06369 1.19702 0.98564 0.97441 0.70274 1.21365 0.95515 1.42064 0.98455 0.91669 1.24935 0.98252 0.94484 0.96151 1.69929 1.34412 1.40853 1.07752 0.86302 0.83579 0.78125 0.78696 1.19559 1.20658 1.20632 1.77261 1.28108 1.19109 0.90488 0.87849 0.91564 0.91926 0.85485 0.82572 0.77129 0.82024 0.75376 0.82276 0.91091 0.89887 0.90589 0.92989 0.92759 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -3.68 10.56 -39.26 -0.41 -4.09 16 3 C 0.47 5.60 7.95 36.00 0.29 5.89 16 4 O -0.50 -7.46 15.78 -18.75 -0.30 -7.76 16 5 C -0.04 -0.39 5.82 -29.04 -0.17 -0.56 16 6 C 0.08 0.91 5.87 -34.96 -0.21 0.71 16 7 O -0.17 -1.70 10.52 7.66 0.08 -1.61 16 8 C -0.02 -0.19 12.03 29.30 0.35 0.16 16 9 C -0.19 -1.80 10.60 -37.45 -0.40 -2.20 16 10 C -0.21 -2.67 6.31 -103.28 -0.65 -3.32 16 11 C 0.60 9.38 7.78 -12.55 -0.10 9.28 16 12 O -0.52 -9.06 11.97 5.26 0.06 -9.00 16 13 N -0.62 -10.26 5.44 -12.12 -0.07 -10.32 16 14 C 0.26 5.48 8.11 -154.43 -1.25 4.23 16 15 C -0.29 -5.97 9.52 -39.83 -0.38 -6.35 16 16 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 17 C -0.09 -1.51 9.89 36.01 0.36 -1.15 16 18 N -0.32 -7.55 3.59 -58.33 -0.21 -7.76 16 19 C 0.26 6.63 5.81 -5.19 -0.03 6.60 16 20 C -0.54 -14.74 9.39 -34.44 -0.32 -15.06 16 21 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -25.03 13.29 55.43 0.74 -24.30 16 24 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 N -0.32 -7.46 12.59 31.43 0.40 -7.07 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 32 H 0.13 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.16 1.54 6.49 -51.93 -0.34 1.20 16 34 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.16 1.17 7.74 -52.49 -0.41 0.77 16 36 H 0.41 5.62 7.99 -40.82 -0.33 5.30 16 37 H 0.16 3.16 5.91 -52.49 -0.31 2.85 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 42 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -35.64 381.26 -6.20 -41.84 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.10 Total: 5.65 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.11 Total: 2.63 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.86 Total: -49.44 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.57 Total: -22.46 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.64 -6.20 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290437508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.611 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds