Wall clock time and date at job start Wed Apr 1 2020 04:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00514 * 2 1 4 4 O 1.20828 * 119.99777 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00384 * 179.97438 * 3 2 1 6 6 C 1.50706 * 109.47437 * 179.97438 * 5 3 2 7 7 O 1.33658 * 125.80100 * 270.00241 * 6 5 3 8 8 C 1.34208 * 110.91158 * 179.97438 * 7 6 5 9 9 C 1.34177 * 109.12525 * 359.70601 * 8 7 6 10 10 C 1.36421 * 125.80294 * 89.99361 * 6 5 3 11 11 C 1.47358 * 127.19524 * 0.02562 * 10 6 5 12 12 O 1.21623 * 120.00028 * 359.97438 * 11 10 6 13 13 N 1.34782 * 119.99849 * 179.97438 * 11 10 6 14 14 C 1.40106 * 119.99734 * 179.97438 * 13 11 10 15 15 C 1.40424 * 125.97626 * 0.32285 * 14 13 11 16 16 C 1.35232 * 107.86568 * 180.16557 * 15 14 13 17 17 C 1.50703 * 126.06766 * 179.84878 * 16 15 14 18 18 N 1.34973 * 107.86541 * 359.58490 * 16 15 14 19 19 C 1.46497 * 125.97459 * 180.26213 * 18 16 15 20 20 C 1.50702 * 109.46850 * 90.00344 * 19 18 16 21 21 H 1.07999 * 120.00358 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99781 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99959 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00007 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47040 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47567 * 119.99341 * 24 22 20 27 27 H 1.48501 * 109.46862 * 239.99690 * 24 22 20 28 28 N 1.31229 * 125.97408 * 180.02562 * 14 13 11 29 29 H 1.08998 * 109.47329 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47719 * 300.00781 * 1 2 3 31 31 H 1.09006 * 109.46951 * 60.00523 * 1 2 3 32 32 H 1.08998 * 109.47584 * 59.99294 * 5 3 2 33 33 H 1.09005 * 109.47122 * 299.99656 * 5 3 2 34 34 H 1.07997 * 125.44185 * 179.97438 * 8 7 6 35 35 H 1.08000 * 127.02497 * 180.26867 * 9 8 7 36 36 H 0.96997 * 119.99972 * 359.97438 * 13 11 10 37 37 H 1.08001 * 126.06603 * 0.04464 * 15 14 13 38 38 H 1.09002 * 109.47152 * 269.68932 * 17 16 15 39 39 H 1.09001 * 109.46980 * 149.69032 * 17 16 15 40 40 H 1.09004 * 109.47113 * 29.69013 * 17 16 15 41 41 H 1.09003 * 109.47259 * 209.99978 * 19 18 16 42 42 H 1.08994 * 109.47368 * 330.00252 * 19 18 16 43 43 H 0.97000 * 119.99974 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 3.9937 2.7200 -0.0002 7 8 4.2159 3.4690 -1.0846 8 6 4.5830 4.7132 -0.7404 9 6 4.6040 4.8110 0.5976 10 6 4.2195 3.4860 1.1058 11 6 4.0970 3.0736 2.5152 12 8 3.7608 1.9374 2.7894 13 7 4.3576 3.9556 3.5005 14 6 4.2407 3.5637 4.8405 15 6 3.8695 2.2889 5.2978 16 6 3.8705 2.3166 6.6498 17 6 3.5294 1.1657 7.5610 18 7 4.2368 3.5562 7.0383 19 6 4.3727 4.0195 8.4215 20 6 5.7819 3.7755 8.8967 21 1 6.5038 3.3204 8.2349 22 6 6.1491 4.1323 10.1769 23 7 5.2699 4.6860 10.9830 24 14 7.8960 3.8305 10.7658 25 1 8.6840 3.2010 9.6759 26 1 8.5206 5.1230 11.1458 27 1 7.8719 2.9270 11.9441 28 7 4.4641 4.3222 5.8879 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 3.9564 0.7804 -0.8890 33 1 3.9557 0.7809 0.8909 34 1 4.8193 5.5098 -1.4302 35 1 4.8553 5.6838 1.1820 36 1 4.6261 4.8617 3.2818 37 1 3.6246 1.4380 4.6794 38 1 2.4617 1.1797 7.7800 39 1 4.0921 1.2587 8.4900 40 1 3.7879 0.2263 7.0722 41 1 4.1522 5.0859 8.4708 42 1 3.6753 3.4745 9.0574 43 1 5.5283 4.9373 11.8835 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290437508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:18 Heat of formation + Delta-G solvation = -46.079021 kcal Electronic energy + Delta-G solvation = -29669.299352 eV Core-core repulsion = 25296.788247 eV Total energy + Delta-G solvation = -4372.511105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.72465 -42.30259 -41.46972 -40.46889 -37.65659 -36.42533 -35.36119 -34.29244 -33.51695 -32.86109 -32.60855 -29.65250 -28.72086 -27.91691 -27.79231 -25.64922 -24.45657 -22.91905 -22.55532 -21.54834 -21.16604 -20.36800 -18.94382 -18.90242 -18.77182 -17.81417 -17.67687 -17.61328 -17.10556 -17.03495 -16.73132 -16.45472 -16.15027 -15.75868 -15.54714 -14.93780 -14.77958 -14.55919 -14.44878 -14.34618 -13.95424 -13.85715 -13.76928 -13.65337 -13.56258 -13.16526 -13.00265 -12.85785 -12.81466 -12.69936 -12.27781 -12.11688 -11.85258 -11.76389 -11.59364 -11.37447 -11.07661 -10.93255 -10.74457 -9.77391 -9.60514 -9.16174 -8.33760 -6.51425 -0.01873 0.91453 1.06968 1.14412 1.26422 1.36868 1.38685 1.49939 1.53511 1.75921 1.97152 2.27625 2.39163 2.40822 2.96065 3.30800 3.45888 3.72575 3.76186 3.88542 4.08669 4.12763 4.28253 4.30002 4.33371 4.44626 4.53864 4.62660 4.69717 4.76103 4.78433 4.85024 4.85426 4.97439 4.97919 5.11897 5.23703 5.28463 5.30226 5.53061 5.79756 5.88273 5.89772 6.21431 6.24468 6.58971 6.61138 6.90464 7.02232 7.19723 8.72622 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.002395 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.922598 B =11689.633467 C =12809.289806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.471 3.529 4 O -0.537 6.537 5 C -0.041 4.041 6 C 0.080 3.920 7 O -0.169 6.169 8 C -0.007 4.007 9 C -0.204 4.204 10 C -0.240 4.240 11 C 0.596 3.404 12 O -0.541 6.541 13 N -0.616 5.616 14 C 0.272 3.728 15 C -0.297 4.297 16 C 0.089 3.911 17 C -0.085 4.085 18 N -0.341 5.341 19 C 0.275 3.725 20 C -0.552 4.552 21 H 0.049 0.951 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.972 3.028 25 H -0.274 1.274 26 H -0.274 1.274 27 H -0.266 1.266 28 N -0.357 5.357 29 H 0.136 0.864 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.168 0.832 33 H 0.153 0.847 34 H 0.258 0.742 35 H 0.180 0.820 36 H 0.423 0.577 37 H 0.170 0.830 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.024 0.976 42 H 0.053 0.947 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 -7.417 -26.077 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.078 4.078 6 C 0.026 3.974 7 O -0.064 6.064 8 C -0.073 4.073 9 C -0.223 4.223 10 C -0.244 4.244 11 C 0.386 3.614 12 O -0.419 6.419 13 N -0.265 5.265 14 C 0.018 3.982 15 C -0.328 4.328 16 C -0.042 4.042 17 C -0.143 4.143 18 N -0.124 5.124 19 C 0.156 3.844 20 C -0.590 4.590 21 H 0.068 0.932 22 C -0.178 4.178 23 N -0.556 5.556 24 Si 0.796 3.204 25 H -0.198 1.198 26 H -0.200 1.200 27 H -0.191 1.191 28 N -0.188 5.188 29 H 0.154 0.846 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.186 0.814 33 H 0.170 0.830 34 H 0.274 0.726 35 H 0.198 0.802 36 H 0.260 0.740 37 H 0.187 0.813 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.444 -6.744 -25.498 26.746 hybrid contribution 0.410 0.420 0.630 0.861 sum -4.034 -6.324 -24.868 25.975 Atomic orbital electron populations 1.23569 0.74531 1.05929 1.02356 1.86465 1.25100 1.31975 1.83649 1.23572 0.91990 0.81525 0.71348 1.90695 1.67918 1.37440 1.46602 1.20013 0.88044 0.88858 1.10870 1.21768 0.98677 0.93386 0.83565 1.83769 1.66412 1.22394 1.33796 1.24791 1.01165 0.84641 0.96665 1.23212 1.06712 0.96709 0.95653 1.20901 1.14815 0.97302 0.91429 1.17535 0.75732 0.84013 0.84169 1.90650 1.47448 1.20029 1.83783 1.42257 1.67330 1.16274 1.00610 1.19262 1.00363 0.93449 0.85135 1.21446 1.19662 0.98926 0.92720 1.21774 0.98410 0.88571 0.95419 1.20513 1.02930 0.93409 0.97486 1.48811 1.49983 1.07755 1.05837 1.19265 0.97808 0.95661 0.71661 1.21456 0.96064 1.42700 0.98806 0.93234 1.25742 1.02267 0.93838 0.95996 1.70009 1.36286 1.41118 1.08236 0.85291 0.78468 0.78330 0.78286 1.19814 1.19982 1.19135 1.77179 1.30286 1.20264 0.91033 0.84573 0.92900 0.91420 0.81436 0.82964 0.72644 0.80237 0.73974 0.81294 0.88927 0.91332 0.87732 0.95800 0.92936 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.36 -7.00 10.56 -51.42 -0.54 -7.55 16 3 C 0.47 10.86 7.95 71.23 0.57 11.43 16 4 O -0.54 -16.04 15.78 21.96 0.35 -15.70 16 5 C -0.04 -0.74 5.82 29.10 0.17 -0.57 16 6 C 0.08 1.70 5.87 25.26 0.15 1.85 16 7 O -0.17 -2.98 10.52 4.48 0.05 -2.93 16 8 C -0.01 -0.10 12.03 66.89 0.80 0.71 16 9 C -0.20 -3.52 10.60 23.65 0.25 -3.27 16 10 C -0.24 -5.88 6.31 -18.99 -0.12 -6.00 16 11 C 0.60 18.71 7.78 86.64 0.67 19.39 16 12 O -0.54 -18.90 11.97 -4.10 -0.05 -18.95 16 13 N -0.62 -20.56 5.44 -310.51 -1.69 -22.25 16 14 C 0.27 11.50 8.11 133.34 1.08 12.58 16 15 C -0.30 -12.38 9.52 22.11 0.21 -12.17 16 16 C 0.09 3.79 6.92 41.38 0.29 4.08 16 17 C -0.09 -2.86 9.89 71.24 0.70 -2.15 16 18 N -0.34 -16.84 3.59 -338.45 -1.22 -18.05 16 19 C 0.27 14.71 5.81 85.63 0.50 15.20 16 20 C -0.55 -31.15 9.39 25.60 0.24 -30.91 16 21 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 22 C 0.02 1.24 5.46 84.66 0.46 1.70 16 23 N -0.92 -52.03 13.29 21.45 0.28 -51.74 16 24 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 28 N -0.36 -17.24 12.59 -54.47 -0.69 -17.93 16 29 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 31 H 0.07 0.93 8.13 -2.38 -0.02 0.91 16 32 H 0.17 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.15 2.88 6.49 -2.38 -0.02 2.87 16 34 H 0.26 0.64 8.06 -2.91 -0.02 0.61 16 35 H 0.18 2.27 7.74 -2.91 -0.02 2.25 16 36 H 0.42 11.63 7.99 -92.71 -0.74 10.89 16 37 H 0.17 6.67 5.91 -2.91 -0.02 6.65 16 38 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.07 2.50 7.71 -2.39 -0.02 2.49 16 40 H 0.10 2.86 8.14 -2.38 -0.02 2.85 16 41 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.05 2.77 7.65 -2.39 -0.02 2.76 16 43 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -79.28 381.26 6.03 -73.26 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.34 Total: 23.14 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 7.17 Total: 13.50 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -3.31 Total: -109.97 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -0.20 Total: -45.12 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -79.28 6.03 -73.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290437508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.177 kcal (2) G-P(sol) polarization free energy of solvation -79.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds